| Year |
Citation |
Score |
| 2022 |
Osterman A, Mondragón A. Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism. Elife. 11. PMID 35969036 DOI: 10.7554/eLife.72702 |
0.455 |
|
| 2021 |
Smith EM, Mondragón A. Basic residues at the C-gate of DNA gyrase are involved in DNA supercoiling. The Journal of Biological Chemistry. 101000. PMID 34303706 DOI: 10.1016/j.jbc.2021.101000 |
0.347 |
|
| 2020 |
Chan CW, Mondragón A. Crystal structure of an atypical cobalamin riboswitch reveals RNA structural adaptability as basis for promiscuous ligand binding. Nucleic Acids Research. PMID 32544228 DOI: 10.1093/Nar/Gkaa507 |
0.438 |
|
| 2020 |
Chan CW, Badong D, Rajan R, Mondragón A. Crystal structures of an unmodified bacterial tRNA reveal intrinsic structural flexibility and plasticity as general properties of unbound tRNAs. Rna. 26: 278-289. DOI: 10.2210/Pdb6Ugg/Pdb |
0.458 |
|
| 2019 |
Chan CW, Badong D, Rajan R, Mondragon A. Crystal structures of an unmodified bacterial tRNA reveal intrinsic structural flexibility and plasticity as general properties of unbound tRNAs. Rna (New York, N.Y.). PMID 31848215 DOI: 10.1261/rna.073478.119 |
0.355 |
|
| 2019 |
Dorsey BW, Huang L, Mondragón A. Structural organization of a Type III-A CRISPR effector subcomplex determined by X-ray crystallography and cryo-EM. Nucleic Acids Research. 47: 3765-3783. DOI: 10.2210/Pdb6Nbt/Pdb |
0.386 |
|
| 2018 |
Soczek KM, Grant T, Rosenthal PB, Mondragon A. CryoEM structures of open dimers of Gyrase A in complex with DNA illuminate mechanism of strand passage. Elife. 7. PMID 30457554 DOI: 10.2210/Pdb6N1Q/Pdb |
0.52 |
|
| 2018 |
Zhang J, Chetnani B, Cormack ED, Alonso D, Liu W, Mondragon A, Fei J. Specific structural elements of the T-box riboswitch drive the two-step binding of the tRNA ligand. Elife. 7. PMID 30251626 DOI: 10.1016/J.Bpj.2018.11.1933 |
0.366 |
|
| 2018 |
Chan CW, Kiesel BR, Mondragón A. Crystal structure of human Rpp20/Rpp25 reveals quaternary level adaptation of the Alba scaffold as structural basis for single-stranded RNA binding. Journal of Molecular Biology. PMID 29625199 DOI: 10.1016/J.Jmb.2018.03.029 |
0.487 |
|
| 2018 |
Gunn KH, Marko JF, Mondragón A. Single-Molecule Magnetic Tweezer Analysis of Topoisomerases. Methods in Molecular Biology (Clifton, N.J.). 1703: 139-152. PMID 29177739 DOI: 10.1007/978-1-4939-7459-7_10 |
0.448 |
|
| 2018 |
Soczek KM, Grant T, Rosenthal PB, Mondragón A. Author response: CryoEM structures of open dimers of gyrase A in complex with DNA illuminate mechanism of strand passage Elife. DOI: 10.7554/Elife.41215.042 |
0.475 |
|
| 2018 |
Zhang J, Chetnani B, Cormack ED, Alonso D, Liu W, Mondragón A, Fei J. Author response: Specific structural elements of the T-box riboswitch drive the two-step binding of the tRNA ligand Elife. DOI: 10.7554/Elife.39518.045 |
0.322 |
|
| 2017 |
Brahmachari S, Gunn KH, Giuntoli RD, Mondragón A, Marko JF. Nucleation of Multiple Buckled Structures in Intertwined DNA Double Helices. Physical Review Letters. 119: 188103. PMID 29219598 DOI: 10.1103/Physrevlett.119.188103 |
0.477 |
|
| 2017 |
Chetnani B, Mondragón A. Molecular envelope and atomic model of an anti-terminated glyQS T-box regulator in complex with tRNAGly. Nucleic Acids Research. PMID 28531275 DOI: 10.1093/Nar/Gkx451 |
0.389 |
|
| 2017 |
Gunn KH, Marko JF, Mondragón A. An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases. Nature Structural & Molecular Biology. PMID 28414321 DOI: 10.1038/Nsmb.3401 |
0.491 |
|
| 2016 |
Rajan R, Osterman A, Mondragón A. Methanopyrus kandleri topoisomerase V contains three distinct AP lyase active sites in addition to the topoisomerase active site. Nucleic Acids Research. PMID 26908655 DOI: 10.1093/Nar/Gkw122 |
0.424 |
|
| 2015 |
Zhang Y, Rajan R, Seifert HS, Mondragón A, Sontheimer EJ. DNase H Activity of Neisseria meningitidis Cas9. Molecular Cell. 60: 242-55. PMID 26474066 DOI: 10.1016/j.molcel.2015.09.020 |
0.318 |
|
| 2015 |
Philips SJ, Canalizo-Hernandez M, Yildirim I, Schatz GC, Mondragón A, O'Halloran TV. TRANSCRIPTION. Allosteric transcriptional regulation via changes in the overall topology of the core promoter. Science (New York, N.Y.). 349: 877-81. PMID 26293965 DOI: 10.1126/Science.Aaa9809 |
0.473 |
|
| 2015 |
Clark MD, Marcum R, Graveline R, Chan CW, Xie T, Chen Z, Ding Y, Zhang Y, Mondragón A, David G, Radhakrishnan I. Structural insights into the assembly of the histone deacetylase-associated Sin3L/Rpd3L corepressor complex. Proceedings of the National Academy of Sciences of the United States of America. PMID 26124119 DOI: 10.1073/Pnas.1504021112 |
0.444 |
|
| 2014 |
Gilston BA, Wang S, Marcus MD, Canalizo-Hernández MA, Swindell EP, Xue Y, Mondragón A, O'Halloran TV. Structural and mechanistic basis of zinc regulation across the E. coli Zur regulon. Plos Biology. 12: e1001987. PMID 25369000 DOI: 10.1371/Journal.Pbio.1001987 |
0.499 |
|
| 2014 |
Terekhova K, Marko JF, Mondragón A. Single-molecule analysis uncovers the difference between the kinetics of DNA decatenation by bacterial topoisomerases I and III. Nucleic Acids Research. 42: 11657-67. PMID 25232096 DOI: 10.1093/Nar/Gku785 |
0.48 |
|
| 2014 |
Soczek KM, Gunn KH, Critchelow CJ, Grant T, Rosenthal P, Mondragon A. Elucidation of Mechanistic Details from Structural Studies of DNA Gyrase Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.336 |
0.543 |
|
| 2013 |
Chetnani B, Mondragón A. RNA exerts self-control Nature. 500: 279-280. PMID 23892780 DOI: 10.1038/Nature12460 |
0.415 |
|
| 2013 |
Chan CW, Chetnani B, Mondragón A. Structure and function of the T-loop structural motif in noncoding RNAs Wiley Interdisciplinary Reviews: Rna. 4: 507-522. PMID 23754657 DOI: 10.1002/Wrna.1175 |
0.361 |
|
| 2013 |
Mondragón A. Structural studies of RNase P Annual Review of Biophysics. 42: 537-557. PMID 23654306 DOI: 10.1146/Annurev-Biophys-083012-130406 |
0.352 |
|
| 2013 |
Terekhova K, Marko JF, Mondragón A. Studies of bacterial topoisomerases I and III at the single-molecule level. Biochemical Society Transactions. 41: 571-5. PMID 23514156 DOI: 10.1042/Bst20120297 |
0.45 |
|
| 2013 |
Gunn KH, Soczek KM, Marko JF, Mondragon A. Studies of DNA Gyrase at the Single Molecule Level Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.477 |
0.524 |
|
| 2012 |
Terekhova K, Gunn KH, Marko JF, Mondragón A. Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways. Nucleic Acids Research. 40: 10432-40. PMID 22923519 DOI: 10.1093/Nar/Gks780 |
0.456 |
|
| 2012 |
Reiter NJ, Osterman AK, Mondragón A. The bacterial ribonuclease P holoenzyme requires specific, conserved residues for efficient catalysis and substrate positioning Nucleic Acids Research. 40: 10384-10393. PMID 22904083 DOI: 10.1093/Nar/Gks744 |
0.414 |
|
| 2012 |
Yasunaga M, Ipsaro JJ, Mondragón A. Structurally similar but functionally diverse ZU5 domains in human erythrocyte ankyrin. Journal of Molecular Biology. 417: 336-50. PMID 22310050 DOI: 10.1016/J.Jmb.2012.01.041 |
0.769 |
|
| 2012 |
Terekhova K, Marko JF, Mondragón A. Studying the Differences in Relaxation Activity by Topoisomerase I and III at the Single Molecule Level Biophysical Journal. 102: 51a. DOI: 10.1016/J.Bpj.2011.11.308 |
0.459 |
|
| 2011 |
Reiter NJ, Chan CW, Mondragón A. Emerging structural themes in large RNA molecules. Current Opinion in Structural Biology. 21: 319-26. PMID 21474301 DOI: 10.1016/J.Sbi.2011.03.003 |
0.421 |
|
| 2011 |
Godley LA, Mondragón A. Molecular biology. Preference by exclusion. Science (New York, N.Y.). 331: 1017-8. PMID 21350155 DOI: 10.1126/Science.1202090 |
0.417 |
|
| 2011 |
Baker NM, Weigand S, Maar-Mathias S, Mondragón A. Solution structures of DNA-bound gyrase. Nucleic Acids Research. 39: 755-66. PMID 20870749 DOI: 10.1093/Nar/Gkq799 |
0.752 |
|
| 2010 |
Reiter NJ, Osterman A, Torres-Larios A, Swinger KK, Pan T, Mondragón A. Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA. Nature. 468: 784-9. PMID 21076397 DOI: 10.1038/Nature09516 |
0.406 |
|
| 2010 |
Patel A, Yakovleva L, Shuman S, Mondragón A. Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding site. Structure (London, England : 1993). 18: 725-33. PMID 20541510 DOI: 10.1016/J.Str.2010.03.007 |
0.516 |
|
| 2010 |
Ipsaro JJ, Harper SL, Messick TE, Marmorstein R, Mondragón A, Speicher DW. Crystal structure and functional interpretation of the erythrocyte spectrin tetramerization domain complex. Blood. 115: 4843-52. PMID 20197550 DOI: 10.1182/Blood-2010-01-261396 |
0.773 |
|
| 2010 |
Ipsaro JJ, Mondragón A. Structural basis for spectrin recognition by ankyrin. Blood. 115: 4093-101. PMID 20101027 DOI: 10.1182/Blood-2009-11-255604 |
0.772 |
|
| 2009 |
Ipsaro JJ, Huang L, Mondragón A. Structures of the spectrin-ankyrin interaction binding domains. Blood. 113: 5385-93. PMID 19141864 DOI: 10.1182/Blood-2008-10-184358 |
0.769 |
|
| 2009 |
Mondragon A. Doing Magic with DNA Science. 325: 1626-1626. DOI: 10.1126/Science.1177945 |
0.429 |
|
| 2007 |
Taneja B, Schnurr B, Slesarev A, Marko JF, Mondragón A. Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism. Proceedings of the National Academy of Sciences of the United States of America. 104: 14670-5. PMID 17804808 DOI: 10.1073/Pnas.0701989104 |
0.447 |
|
| 2007 |
Changela A, DiGate RJ, Mondragón A. Structural studies of E. coli topoisomerase III-DNA complexes reveal a novel type IA topoisomerase-DNA conformational intermediate. Journal of Molecular Biology. 368: 105-18. PMID 17331537 DOI: 10.1016/J.Jmb.2007.01.065 |
0.762 |
|
| 2006 |
Torres-Larios A, Swinger KK, Pan T, Mondragón A. Structure of ribonuclease P--a universal ribozyme. Current Opinion in Structural Biology. 16: 327-35. PMID 16650980 DOI: 10.1016/J.Sbi.2006.04.002 |
0.402 |
|
| 2006 |
Baird NJ, Srividya N, Krasilnikov AS, Mondragón A, Sosnick TR, Pan T. Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium. Rna (New York, N.Y.). 12: 598-606. PMID 16581805 DOI: 10.1261/Rna.2186506 |
0.43 |
|
| 2006 |
Taneja B, Patel A, Slesarev A, Mondragón A. Structure of the N-terminal fragment of topoisomerase V reveals a new family of topoisomerases. The Embo Journal. 25: 398-408. PMID 16395333 DOI: 10.1038/Sj.Emboj.7600922 |
0.459 |
|
| 2006 |
Patel A, Shuman S, Mondragón A. Crystal structure of a bacterial type IB DNA topoisomerase reveals a preassembled active site in the absence of DNA. The Journal of Biological Chemistry. 281: 6030-7. PMID 16368685 DOI: 10.1074/Jbc.M512332200 |
0.543 |
|
| 2005 |
Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragón A. Crystal structure of the RNA component of bacterial ribonuclease P. Nature. 437: 584-7. PMID 16113684 DOI: 10.1038/Nature04074 |
0.379 |
|
| 2005 |
Changela A, Martins A, Shuman S, Mondragón A. Crystal structure of baculovirus RNA triphosphatase complexed with phosphate. The Journal of Biological Chemistry. 280: 17848-56. PMID 15713658 DOI: 10.1074/Jbc.M500885200 |
0.723 |
|
| 2004 |
Kusunoki H, Minasov G, Macdonald RI, Mondragón A. Independent movement, dimerization and stability of tandem repeats of chicken brain alpha-spectrin. Journal of Molecular Biology. 344: 495-511. PMID 15522301 DOI: 10.1016/J.Jmb.2004.09.019 |
0.376 |
|
| 2004 |
Krasilnikov AS, Xiao Y, Pan T, Mondragón A. Basis for structural diversity in homologous RNAs. Science (New York, N.Y.). 306: 104-7. PMID 15459389 DOI: 10.1126/Science.1101489 |
0.466 |
|
| 2004 |
Kusunoki H, MacDonald RI, Mondragón A. Structural insights into the stability and flexibility of unusual erythroid spectrin repeats. Structure (London, England : 1993). 12: 645-56. PMID 15062087 DOI: 10.1016/J.Str.2004.02.022 |
0.405 |
|
| 2003 |
Taneja B, Maar S, Shuvalova L, Collart F, Anderson W, Mondragón A. Structure of the bacillus subtilis YYCN protein: a putative N-acetyltransferase. Proteins. 53: 950-2. PMID 14635137 DOI: 10.1002/Prot.10561 |
0.351 |
|
| 2003 |
Perry K, Mondragón A. Structure of a complex between E. coli DNA topoisomerase I and single-stranded DNA. Structure (London, England : 1993). 11: 1349-58. PMID 14604525 DOI: 10.1016/J.Str.2003.09.013 |
0.534 |
|
| 2003 |
Changela A, Chen K, Xue Y, Holschen J, Outten CE, O'Halloran TV, Mondragón A. Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR. Science (New York, N.Y.). 301: 1383-7. PMID 12958362 DOI: 10.1126/Science.1085950 |
0.671 |
|
| 2003 |
Krasilnikov AS, Mondragón A. On the occurrence of the T-loop RNA folding motif in large RNA molecules. Rna (New York, N.Y.). 9: 640-3. PMID 12756321 DOI: 10.1261/Rna.2202703 |
0.394 |
|
| 2003 |
Krasilnikov AS, Yang X, Pan T, Mondragón A. Crystal structure of the specificity domain of ribonuclease P. Nature. 421: 760-4. PMID 12610630 DOI: 10.1038/Nature01386 |
0.526 |
|
| 2003 |
Changela A, Perry K, Taneja B, Mondragón A. DNA manipulators: caught in the act. Current Opinion in Structural Biology. 13: 15-22. PMID 12581655 DOI: 10.1016/S0959-440X(02)00006-4 |
0.746 |
|
| 2002 |
Perry K, Mondragón A. Biochemical characterization of an invariant histidine involved in Escherichia coli DNA topoisomerase I catalysis. The Journal of Biological Chemistry. 277: 13237-45. PMID 11809772 DOI: 10.1074/Jbc.M112019200 |
0.459 |
|
| 2001 |
Changela A, DiGate RJ, Mondragón A. Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule. Nature. 411: 1077-81. PMID 11429611 DOI: 10.1038/35082615 |
0.755 |
|
| 2001 |
Changela A, Ho CK, Martins A, Shuman S, Mondragón A. Structure and mechanism of the RNA triphosphatase component of mammalian mRNA capping enzyme. The Embo Journal. 20: 2575-86. PMID 11350947 DOI: 10.1093/Emboj/20.10.2575 |
0.707 |
|
| 2001 |
Li Z, Mondragón A, DiGate RJ. The mechanism of type IA topoisomerase-mediated DNA topological transformations. Molecular Cell. 7: 301-7. PMID 11239459 DOI: 10.1016/S1097-2765(01)00178-2 |
0.5 |
|
| 2000 |
Li Z, Mondragón A, Hiasa H, Marians KJ, DiGate RJ. Identification of a unique domain essential for Escherichia coli DNA topoisomerase III-catalysed decatenation of replication intermediates. Molecular Microbiology. 35: 888-95. PMID 10692165 DOI: 10.1046/J.1365-2958.2000.01763.X |
0.49 |
|
| 1999 |
Mondragón A, DiGate R. The structure of Escherichia coli DNA topoisomerase III. Structure (London, England : 1993). 7: 1373-83. PMID 10574789 DOI: 10.1016/S0969-2126(00)80027-1 |
0.477 |
|
| 1999 |
Feinberg H, Changela A, Mondragón A. Protein-nucleotide interactions in E. coli DNA topoisomerase I. Nature Structural Biology. 6: 961-8. PMID 10504732 DOI: 10.1038/13333 |
0.762 |
|
| 1999 |
Feinberg H, Lima CD, Mondragón A. Conformational changes in E. coli DNA topoisomerase I. Nature Structural Biology. 6: 918-22. PMID 10504724 DOI: 10.1038/13283 |
0.505 |
|
| 1999 |
Grum VL, Li D, MacDonald RI, Mondragón A. Structures of two repeats of spectrin suggest models of flexibility. Cell. 98: 523-35. PMID 10481916 DOI: 10.1016/S0092-8674(00)81980-7 |
0.405 |
|
| 1997 |
Mondragón A. Solving the cis/trans paradox in the Int family of recombinases. Nature Structural Biology. 4: 427-9. PMID 9187646 DOI: 10.1038/Nsb0697-427 |
0.322 |
|
| 1996 |
Mondragón A, Lima C, Lue N, Patera A, Sharma A. Structural studies of type I DNA topoisomerases Acta Crystallographica Section a Foundations of Crystallography. 52: C153-C153. DOI: 10.1107/S0108767396093117 |
0.365 |
|
| 1995 |
Lue N, Sharma A, Mondragón A, Wang JC. A 26 kDa yeast DNA topoisomerase I fragment: crystallographic structure and mechanistic implications. Structure (London, England : 1993). 3: 1315-22. PMID 8747458 DOI: 10.1016/S0969-2126(01)00269-6 |
0.524 |
|
| 1995 |
Sharma A, Mondragón A. DNA topoisomerases. Current Opinion in Structural Biology. 5: 39-47. PMID 7773745 DOI: 10.1016/0959-440X(95)80007-N |
0.334 |
|
| 1995 |
Mondragón A. Unraveling transposition: gamma delta resolvase in complex with DNA. Structure (London, England : 1993). 3: 755-8. PMID 7582892 DOI: 10.1016/S0969-2126(01)00210-6 |
0.469 |
|
| 1994 |
Lima CD, Wang JC, Mondragón A. Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I. Nature. 367: 138-46. PMID 8114910 DOI: 10.1038/367138A0 |
0.515 |
|
| 1994 |
Sharma A, Hanai R, Mondragón A. Crystal structure of the amino-terminal fragment of vaccinia virus DNA topoisomerase I at 1.6 A resolution. Structure (London, England : 1993). 2: 767-77. PMID 7994576 DOI: 10.1016/S0969-2126(94)00077-8 |
0.445 |
|
| 1994 |
Lima CD, Mondragón A. Mechanism of type II DNA topoisomerases: a tale of two gates. Structure (London, England : 1993). 2: 559-60. PMID 7922032 DOI: 10.1016/S0969-2126(00)00055-1 |
0.499 |
|
| 1993 |
Lima CD, Wang JC, Mondragón A. Crystallization of a 67 kDa fragment of Escherichia coli DNA topoisomerase I. Journal of Molecular Biology. 232: 1213-6. PMID 8396651 DOI: 10.1006/Jmbi.1993.1474 |
0.483 |
|
| 1991 |
Mondragón A, Harrison SC. The phage 434 Cro/OR1 complex at 2.5 A resolution. Journal of Molecular Biology. 219: 321-34. PMID 2038059 DOI: 10.1016/0022-2836(91)90568-Q |
0.707 |
|
| 1989 |
Mondragón A, Subbiah S, Almo SC, Drottar M, Harrison SC. Structure of the amino-terminal domain of phage 434 repressor at 2.0 A resolution. Journal of Molecular Biology. 205: 189-200. PMID 2926803 DOI: 10.1016/0022-2836(89)90375-6 |
0.67 |
|
| 1989 |
Mondragón A, Wolberger C, Harrison SC. Structure of phage 434 Cro protein at 2.35 A resolution. Journal of Molecular Biology. 205: 179-88. PMID 2647998 DOI: 10.1016/0022-2836(89)90374-4 |
0.721 |
|
| 1988 |
Harrison SC, Anderson JE, Koudelka GB, Mondragon A, Subbiah S, Wharton RP, Wolberger C, Ptashne M. Recognition of DNA sequences by the repressor of bacteriophage 434. Biophysical Chemistry. 29: 31-7. PMID 3359001 DOI: 10.1016/0301-4622(88)87022-4 |
0.768 |
|
| 1984 |
Westhof E, Altschuh D, Moras D, Bloomer AC, Mondragon A, Klug A, Van Regenmortel MH. Correlation between segmental mobility and the location of antigenic determinants in proteins. Nature. 311: 123-6. PMID 6206398 DOI: 10.1038/311123A0 |
0.454 |
|
| Show low-probability matches. |
