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Luohao Xu - Publications

Affiliations: 
Southwest University, PR China 
Area:
Genomics
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2025 Li BP, Kang N, Xu ZX, Luo HR, Fan SY, Ao XH, Li X, Han YP, Ou XB, Xu LH. Transposable elements shape the landscape of heterozygous structural variation in a bird genome. Zoological Research. 46: 75-86. PMID 39846188 DOI: 10.24272/j.issn.2095-8137.2024.237  0.62
2024 Xu L, Ren Y, Wu J, Cui T, Dong R, Huang C, Feng Z, Zhang T, Yang P, Yuan J, Xu X, Liu J, Wang J, Chen W, Mi D, ... ... Xu L, et al. Author Correction: Evolution and expression patterns of the neo-sex chromosomes of the crested ibis. Nature Communications. 15: 9278. PMID 39468078 DOI: 10.1038/s41467-024-53229-x  0.521
2024 Zhou C, Zhou Y, Xu L, Liu F, Lei L, Gao H, Li J, Fu S, Duan Y, Tan Y, Mao W, Wang Q, Zhou R, Xiao S, Liu C, et al. Chromosome-level genome assembly and population genomic analysis provide insights into the genetic diversity and adaption of Schizopygopsis younghusbandi on the Tibetan Plateau. Integrative Zoology. PMID 39350496 DOI: 10.1111/1749-4877.12910  0.57
2024 Wu J, Liu F, Jiao J, Luo H, Fan S, Liu J, Wang H, Cui N, Zhao N, Qu Q, Kuraku S, Huang Z, Xu L. Comparative genomics illuminates karyotype and sex chromosome evolution of sharks. Cell Genomics. 100607. PMID 38996479 DOI: 10.1016/j.xgen.2024.100607  0.658
2024 Xu L, Ren Y, Wu J, Cui T, Dong R, Huang C, Feng Z, Zhang T, Yang P, Yuan J, Xu X, Liu J, Wang J, Chen W, Mi D, ... ... Xu L, et al. Evolution and expression patterns of the neo-sex chromosomes of the crested ibis. Nature Communications. 15: 1670. PMID 38395916 DOI: 10.1038/s41467-024-46052-x  0.635
2023 Rice ES, Alberdi A, Alfieri J, Athrey G, Balacco JR, Bardou P, Blackmon H, Charles M, Cheng HH, Fedrigo O, Fiddaman SR, Formenti G, Frantz LAF, Gilbert MTP, Hearn CJ, ... ... Xu L, et al. A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants. Bmc Biology. 21: 267. PMID 37993882 DOI: 10.1186/s12915-023-01758-0  0.47
2023 Luo H, Jiang X, Li B, Wu J, Shen J, Xu Z, Zhou X, Hou M, Huang Z, Ou X, Xu L. A high-quality genome assembly highlights the evolutionary history of the great bustard (Otis tarda, Otidiformes). Communications Biology. 6: 746. PMID 37463976 DOI: 10.1038/s42003-023-05137-x  0.634
2023 Huang Z, Xu L, Cai C, Zhou Y, Liu J, Xu Z, Zhu Z, Kang W, Cen W, Pei S, Chen D, Shi C, Wu X, Huang Y, Xu C, et al. Three amphioxus reference genomes reveal gene and chromosome evolution of chordates. Proceedings of the National Academy of Sciences of the United States of America. 120: e2201504120. PMID 36867684 DOI: 10.1073/pnas.2201504120  0.711
2023 Huang Z, Xu Z, Bai H, Huang Y, Kang N, Ding X, Liu J, Luo H, Yang C, Chen W, Guo Q, Xue L, Zhang X, Xu L, Chen M, ... ... Xu L, et al. Evolutionary analysis of a complete chicken genome. Proceedings of the National Academy of Sciences of the United States of America. 120: e2216641120. PMID 36780517 DOI: 10.1073/pnas.2216641120  0.659
2022 Long X, Charlesworth D, Qi J, Wu R, Chen M, Wang Z, Xu L, Fu H, Zhang X, Chen X, He L, Zheng L, Huang Z, Zhou Q. Independent evolution of sex chromosomes and male pregnancy-related genes in two seahorse species. Molecular Biology and Evolution. PMID 36578180 DOI: 10.1093/molbev/msac279  0.69
2022 Ma P, Liu X, Xu Z, Liu H, Ding X, Huang Z, Shi C, Liang L, Xu L, Li X, Li G, He Y, Ding Z, Chai C, Wang H, et al. Joint profiling of gene expression and chromatin accessibility during amphioxus development at single-cell resolution. Cell Reports. 39: 110979. PMID 35732129 DOI: 10.1016/j.celrep.2022.110979  0.451
2022 Huang Z, De O Furo I, Liu J, Peona V, Gomes AJB, Cen W, Huang H, Zhang Y, Chen D, Xue T, Zhang Q, Yue Z, Wang Q, Yu L, Chen Y, ... ... Xu L, et al. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. Nature Communications. 13: 944. PMID 35177601 DOI: 10.1038/s41467-022-28585-1  0.637
2021 Wang Z, Zhang J, Xu X, Witt C, Deng Y, Chen G, Meng G, Feng S, Xu L, Szekely T, Zhang G, Zhou Q. Phylogeny and sex chromosome evolution of palaeognathae. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34872841 DOI: 10.1016/J.JGG.2021.06.013  0.738
2021 Xue L, Gao Y, Wu M, Tian T, Fan H, Huang Y, Huang Z, Li D, Xu L. Telomere-to-telomere assembly of a fish Y chromosome reveals the origin of a young sex chromosome pair. Genome Biology. 22: 203. PMID 34253240 DOI: 10.1186/s13059-021-02430-y  0.61
2021 Liu J, Wang Z, Li J, Xu L, Liu J, Feng S, Guo C, Chen S, Ren Z, Rao J, Wei K, Chen Y, Jarvis E, Zhang G, Zhou Q. A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes. Genome Research. PMID 33408157 DOI: 10.1101/gr.271569.120  0.755
2021 Li J, Zhang J, Liu J, Zhou Y, Cai C, Xu L, Dai X, Feng S, Guo C, Rao J, Wei K, Jarvis ED, Jiang Y, Zhou Z, Zhang G, et al. A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals. Gigascience. 10. PMID 33406261 DOI: 10.1093/gigascience/giaa142  0.729
2020 Conte MA, Clark FE, Roberts RB, Xu L, Tao W, Zhou Q, Wang D, Kocher TD. Origin of a giant sex chromosome. Molecular Biology and Evolution. PMID 33300980 DOI: 10.1093/molbev/msaa319  0.667
2020 Xu L, Irestedt M, Zhou Q. Sequence Transpositions Restore Genes on the Highly Degenerated W Chromosomes of Songbirds. Genes. 11. PMID 33126459 DOI: 10.3390/genes11111267  0.678
2020 Tao W, Xu L, Zhao L, Zhu Z, Wu X, Min Q, Wang D, Zhou Q. High-quality chromosome-level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes. Molecular Ecology Resources. PMID 33035394 DOI: 10.1111/1755-0998.13273  0.724
2020 Xu L, Zhou Q. The Female-Specific W Chromosomes of Birds Have Conserved Gene Contents but Are Not Feminized. Genes. 11. PMID 32992746 DOI: 10.3390/genes11101126  0.614
2020 Peona V, Blom MPK, Xu L, Burri R, Sullivan S, Bunikis I, Liachko I, Haryoko T, Jønsson KA, Zhou Q, Irestedt M, Suh A. Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise. Molecular Ecology Resources. PMID 32937018 DOI: 10.1111/1755-0998.13252  0.553
2019 Xu L, Wa Sin SY, Grayson P, Edwards SV, Sackton TB. Evolutionary dynamics of sex chromosomes of paleognathous birds. Genome Biology and Evolution. PMID 31329234 DOI: 10.1093/gbe/evz154  0.693
2019 Cheng H, Liu J, Wen J, Nie X, Xu L, Chen N, Li Z, Wang Q, Zheng Z, Li M, Cui L, Liu Z, Bian J, Wang Z, Xu S, et al. Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat. Genome Biology. 20: 136. PMID 31300020 DOI: 10.1186/s13059-019-1744-x  0.506
2019 Xu L, Auer G, Peona V, Suh A, Deng Y, Feng S, Zhang G, Blom MPK, Christidis L, Prost S, Irestedt M, Zhou Q. Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds. Nature Ecology & Evolution. PMID 30936435 DOI: 10.1038/S41559-019-0850-1  0.744
2017 Seki R, Li C, Fang Q, Hayashi S, Egawa S, Hu J, Xu L, Pan H, Kondo M, Sato T, Matsubara H, Kamiyama N, Kitajima K, Saito D, Liu Y, et al. Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features. Nature Communications. 8: 14229. PMID 28165450 DOI: 10.1038/Ncomms14229  0.594
2015 Uebbing S, Konzer A, Xu L, Backström N, Brunström B, Bergquist J, Ellegren H. Quantitative mass spectrometry reveals partial translational regulation for dosage compensation in chicken. Molecular Biology and Evolution. PMID 26108680 DOI: 10.1093/Molbev/Msv147  0.627
2014 Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 3: 27. PMID 25671092 DOI: 10.1186/2047-217X-3-27  0.643
2014 Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/Science.1251385  0.708
2014 Poulsen M, Hu H, Li C, Chen Z, Xu L, Otani S, Nygaard S, Nobre T, Klaubauf S, Schindler PM, Hauser F, Pan H, Yang Z, Sonnenberg AS, de Beer ZW, et al. Complementary symbiont contributions to plant decomposition in a fungus-farming termite. Proceedings of the National Academy of Sciences of the United States of America. 111: 14500-5. PMID 25246537 DOI: 10.1073/Pnas.1319718111  0.503
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