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Yang Li - Publications

Affiliations: 
Biochemistry and Biophysics University of California, San Francisco, San Francisco, CA 
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zhao Z, Ruan S, Li Y, Qi T, Qi Y, Huang Y, Liu Z, Ruan Q, Ma Y. The Influence of Extra-Ribosomal Functions of Eukaryotic Ribosomal Proteins on Viral Infection. Biomolecules. 14. PMID 39766272 DOI: 10.3390/biom14121565  0.392
2024 Smith AM, Li Y, Velarde A, Cheng Y, Frankel AD. The HIV-1 Nuclear Export Complex Reveals the Role of RNA in Crm1 Cargo Recognition. Biorxiv : the Preprint Server For Biology. PMID 39345625 DOI: 10.1101/2024.09.22.614349  0.732
2024 Liu X, Li Y, Castro L, Yu Z, Cheng Y, Daugherty MD, Gross JD. Structure of the E3 ligase CRL2-ZYG11B with substrates reveals the molecular basis for N-degron recognition and ubiquitination. Biorxiv : the Preprint Server For Biology. PMID 38979164 DOI: 10.1101/2024.06.24.600508  0.644
2024 Liu Y, Li D, Zhang X, Xia S, Qu Y, Ling X, Li Y, Kong X, Zhang L, Cui CP, Li D. A protein sequence-based deep transfer learning framework for identifying human proteome-wide deubiquitinase-substrate interactions. Nature Communications. 15: 4519. PMID 38806474 DOI: 10.1038/s41467-024-48446-3  0.32
2024 Harimana Y, Muhoza B, Munyandamutsa P, Gankhuyag J, Zhang S, Li Y. Unraveling the binding mechanism between soybean protein isolate and selected bioactive compounds. Food Chemistry. 447: 139031. PMID 38513491 DOI: 10.1016/j.foodchem.2024.139031  0.313
2024 Li Y, Liu X, Fujinaga K, Gross JD, Frankel AD. Enhanced NF-κB activation via HIV-1 Tat-TRAF6 cross-talk. Science Advances. 10: eadi4162. PMID 38241362 DOI: 10.1126/sciadv.adi4162  0.544
2023 Han L, Li J, Jiang Y, Lu K, Yang P, Jiang L, Li Y, Qi B. Changes in the structure and functional properties of soybean isolate protein: Effects of different modification methods. Food Chemistry. 432: 137214. PMID 37651782 DOI: 10.1016/j.foodchem.2023.137214  0.308
2023 Porter H, Li Y, Neguembor MV, Beltran M, Varsally W, Martin L, Cornejo MT, Pezic D, Bhamra A, Surinova S, Jenner RG, Cosma MP, Hadjur S. Cohesin-independent STAG proteins interact with RNA and R-loops and promote complex loading. Elife. 12. PMID 37010886 DOI: 10.7554/eLife.79386  0.372
2022 Park GJ, Osinski A, Hernandez G, Eitson JL, Majumdar A, Tonelli M, Henzler-Wildman K, Pawłowski K, Chen Z, Li Y, Schoggins JW, Tagliabracci VS. The mechanism of RNA capping by SARS-CoV-2. Nature. PMID 35944563 DOI: 10.1038/s41586-022-05185-z  0.324
2022 Jia Y, Yan X, Huang Y, Zhu H, Qi B, Li Y. Different interactions driving the binding of soy proteins (7S/11S) and flavonoids (quercetin/rutin): Alterations in the conformational and functional properties of soy proteins. Food Chemistry. 396: 133685. PMID 35843004 DOI: 10.1016/j.foodchem.2022.133685  0.315
2022 Chen IP, Longbotham JE, McMahon S, Suryawanshi RK, Khalid MM, Taha TY, Tabata T, Hayashi JM, Soveg FW, Carlson-Stevermer J, Gupta M, Zhang MY, Lam VL, Li Y, Yu Z, et al. Viral E protein neutralizes BET protein-mediated post-entry antagonism of SARS-CoV-2. Cell Reports. 40: 111088. PMID 35839775 DOI: 10.1016/j.celrep.2022.111088  0.321
2022 Wang Q, Wang J, Xu Y, Li Z, Wang B, Li Y. The Interaction of Influenza A NS1 and Cellular TRBP Protein Modulates the Function of RNA Interference Machinery. Frontiers in Microbiology. 13: 859420. PMID 35558132 DOI: 10.3389/fmicb.2022.859420  0.366
2022 Tagliabracci V, Park G, Osinski A, Hernandez G, Eitson J, Majumdar A, Tonelli M, Henzler-Wildman K, Pawłowski K, Chen Z, Li Y, Schoggins J. The mechanism of RNA capping by SARS-CoV-2. Research Square. PMID 35194601 DOI: 10.21203/rs.3.rs-1336910/v1  0.32
2022 Zhao P, Jing H, Dong W, Duan E, Ke W, Tao R, Li Y, Cao S, Wang H, Zhang Y, Sun Y, Wang J. TRIM26-mediated degradation of nucleocapsid protein limits porcine reproductive and respiratory syndrome virus-2 infection. Virus Research. 311: 198690. PMID 35077707 DOI: 10.1016/j.virusres.2022.198690  0.311
2021 Xu Y, Zhong Z, Ren Y, Ma L, Ye Z, Gao C, Wang J, Li Y. Antiviral RNA interference in disease vector (Asian longhorned) ticks. Plos Pathogens. 17: e1010119. PMID 34860862 DOI: 10.1371/journal.ppat.1010119  0.334
2021 Chen IP, Longbotham JE, McMahon S, Suryawanshi RK, Carlson-Stevermer J, Gupta M, Zhang MY, Soveg FW, Hayashi JM, Taha TY, Lam VL, Li Y, Yu Z, Titus EW, Diallo A, et al. Viral E Protein Neutralizes BET Protein-Mediated Post-Entry Antagonism of SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 34816261 DOI: 10.1101/2021.11.14.468537  0.326
2021 Li Y, Wang Z, Li LP, You ZH, Huang WZ, Zhan XK, Wang YB. Robust and accurate prediction of protein-protein interactions by exploiting evolutionary information. Scientific Reports. 11: 16910. PMID 34413375 DOI: 10.1038/s41598-021-96265-z  0.329
2021 Long X, Yang Z, Li Y, Sun Q, Li X, Kuang E. BRLF1-dependent viral and cellular transcriptomes and transcriptional regulation during EBV primary infection in B lymphoma cells. Genomics. PMID 34087421 DOI: 10.1016/j.ygeno.2021.05.039  0.318
2021 Verba K, Gupta M, Azumaya C, Moritz M, Pourmal S, Diallo A, Merz G, Jang G, Bouhaddou M, Fossati A, Brilot A, Diwanji D, Hernandez E, Herrera N, Kratochvil H, ... ... Li Y, ... ... Li YL, et al. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Research Square. PMID 34031651 DOI: 10.21203/rs.3.rs-515215/v1  0.702
2021 Gupta M, Azumaya CM, Moritz M, Pourmal S, Diallo A, Merz GE, Jang G, Bouhaddou M, Fossati A, Brilot AF, Diwanji D, Hernandez E, Herrera N, Kratochvil HT, Lam VL, ... ... Li Y, ... ... Li YL, et al. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Biorxiv : the Preprint Server For Biology. PMID 34013269 DOI: 10.1101/2021.05.10.443524  0.702
2020 Wang H, Tian Z, Xu Y, Wang Q, Ding SW, Li Y. Altering Intracellular Localization of the RNA Interference Factors by Influenza A Virus Non-structural Protein 1. Frontiers in Microbiology. 11: 590904. PMID 33281788 DOI: 10.3389/fmicb.2020.590904  0.321
2020 Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, Kaake RM, Weckstein AR, Owens TW, Gupta M, Pourmal S, ... ... Li YL, ... ... Li Y, et al. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.). PMID 33060197 DOI: 10.1126/science.abe9403  0.674
2020 Yu P, Li Y, Li Y, Miao Z, Peppelenbosch MP, Pan Q. Guanylate-binding protein 2 orchestrates innate immune responses against murine norovirus and is antagonized by the viral protein NS7. The Journal of Biological Chemistry. PMID 32354743 DOI: 10.1074/jbc.RA120.013544  0.308
2019 Zheng W, Wuyun Q, Li Y, Mortuza SM, Zhang C, Pearce R, Ruan J, Zhang Y. Detecting distant-homology protein structures by aligning deep neural-network based contact maps. Plos Computational Biology. 15: e1007411. PMID 31622328 DOI: 10.1371/Journal.Pcbi.1007411  0.316
2019 Jing H, Tao R, Dong N, Cao S, Sun Y, Ke W, Li Y, Wang J, Zhang Y, Huang H, Dong W. Nuclear localization signal in TRIM22 is essential for inhibition of type 2 porcine reproductive and respiratory syndrome virus replication in MARC-145 cells. Virus Genes. PMID 31375995 DOI: 10.1007/s11262-019-01691-x  0.334
2019 Ke W, Fang L, Tao R, Li Y, Jing H, Wang D, Xiao S. Porcine reproductive and respiratory syndrome virus E protein degrades porcine cholesterol 25-hydroxylase via the ubiquitin-proteasome pathway. Journal of Virology. PMID 31341055 DOI: 10.1128/JVI.00767-19  0.338
2019 Wang X, Song K, Li Y, Tang L, Deng X. Single-Molecule Imaging and Computational Microscopy Approaches Clarify the Mechanism of the Dimerization and Membrane Interactions of Green Fluorescent Protein. International Journal of Molecular Sciences. 20. PMID 30897814 DOI: 10.3390/ijms20061410  0.305
2018 Faust TB, Li Y, Bacon CW, Jang GM, Weiss A, Jayaraman B, Newton BW, Krogan NJ, D'Orso I, Frankel AD. The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation. Elife. 7. PMID 29845934 DOI: 10.7554/Elife.31879  0.678
2018 Cheng B, Li Y, Ma L, Wang Z, Petersen RB, Zheng L, Chen Y, Huang K. Interaction between amyloidogenic proteins and biomembranes in protein misfolding diseases: Mechanisms, contributors, and therapy. Biochimica Et Biophysica Acta. PMID 29466701 DOI: 10.1016/J.Bbamem.2018.02.013  0.315
2018 Sui X, Sun H, Qi B, Zhang M, Li Y, Jiang L. Functional and conformational changes to soy proteins accompanying anthocyanins: Focus on covalent and non-covalent interactions. Food Chemistry. 245: 871-878. PMID 29287453 DOI: 10.1016/j.foodchem.2017.11.090  0.315
2017 Ke W, Fang L, Jing H, Tao R, Wang T, Li Y, Long S, Wang D, Xiao S. Cholesterol 25-Hydroxylase Inhibits Porcine Reproductive and Respiratory Syndrome Virus Replication through Enzyme Activity Dependent and Independent Mechanisms. Journal of Virology. PMID 28724759 DOI: 10.1128/JVI.00827-17  0.314
2017 Liu X, Li Y, Wang X, Xing R, Liu K, Gan Q, Tang C, Gao Z, Jian Y, Luo S, Guo W, Yang C. The BEACH-containing protein WDR81 coordinates p62 and LC3C to promote aggrephagy. The Journal of Cell Biology. PMID 28404643 DOI: 10.1083/Jcb.201608039  0.321
2017 Faust TB, Li Y, Jang GM, Johnson JR, Yang S, Weiss A, Krogan NJ, Frankel AD. PJA2 ubiquitinates the HIV-1 Tat protein with atypical chain linkages to activate viral transcription. Scientific Reports. 7: 45394. PMID 28345603 DOI: 10.1038/Srep45394  0.626
2016 Qi H, Zhou H, Czajkowsky DM, Guo S, Li Y, Wang N, Shi Y, Lin L, Wang J, Wu, Tao SC. Rapid production of virus protein microarray using Protein microArray fabrication through GEne Synthesis (PAGES). Molecular & Cellular Proteomics : McP. PMID 27965274 DOI: 10.1074/mcp.M116.064873  0.325
2016 Li Y, Collins M, An J, Geiser R, Tegeler T, Tsantilas K, Garcia K, Pirrotte P, Bowser R. Immunoprecipitation and Mass Spectrometry Defines an Extensive RBM45 Protein-Protein Interaction Network. Brain Research. PMID 26979993 DOI: 10.1016/J.Brainres.2016.02.047  0.343
2015 Chai F, Li HY, Wang W, Zhu XJ, Li Y, Wang S, Guo L, Zhang LK, Xiao G. Subcellular quantitative proteomic analysis reveals host proteins involved in human cytomegalovirus infection. Biochimica Et Biophysica Acta. 1854: 967-78. PMID 25910425 DOI: 10.1016/j.bbapap.2015.04.016  0.318
2015 Li YI, Sanchez-Pulido L, Haerty W, Ponting CP. RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts. Genome Research. 25: 1-13. PMID 25524026 DOI: 10.1101/Gr.181990.114  0.319
2014 Liang G, He H, Li Y, Ai Q, Yu D. MYB82 functions in regulation of trichome development in Arabidopsis. Journal of Experimental Botany. 65: 3215-23. PMID 24803498 DOI: 10.1093/jxb/eru179  0.322
2012 Ge Q, Huang N, Wynn RM, Li Y, Du X, Miller B, Zhang H, Uyeda K. Structural characterization of a unique interface between carbohydrate response element-binding protein (ChREBP) and 14-3-3β protein. The Journal of Biological Chemistry. 287: 41914-21. PMID 23086940 DOI: 10.1074/jbc.M112.418855  0.313
2011 Lin L, Li Y, Pyo HM, Lu X, Raman SN, Liu Q, Brown EG, Zhou Y. Identification of RNA helicase A as a cellular factor that interacts with influenza A virus NS1 protein and its role in the virus life cycle. Journal of Virology. 86: 1942-54. PMID 22171255 DOI: 10.1128/JVI.06362-11  0.354
2010 Titushin MS, Feng Y, Stepanyuk GA, Li Y, Markova SV, Golz S, Wang BC, Lee J, Wang J, Vysotski ES, Liu ZJ. NMR-derived topology of a GFP-photoprotein energy transfer complex. The Journal of Biological Chemistry. 285: 40891-900. PMID 20926380 DOI: 10.1074/Jbc.M110.133843  0.338
2008 Li Y, Anderson DH, Liu Q, Zhou Y. Mechanism of influenza A virus NS1 protein interaction with the p85beta, but not the p85alpha, subunit of phosphatidylinositol 3-kinase (PI3K) and up-regulation of PI3K activity. The Journal of Biological Chemistry. 283: 23397-409. PMID 18534979 DOI: 10.1074/Jbc.M802737200  0.343
2006 Ye X, Li Y, Huang Q, Yu Y, Yuan H, Wang P, Wan D, Gu J, Huo K, Li YY, Lu H. The novel human gene MIP functions as a co-activator of hMafF. Archives of Biochemistry and Biophysics. 449: 87-93. PMID 16549056 DOI: 10.1016/j.abb.2006.02.011  0.303
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