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Srinivas Aluru, Ph.D. - Publications

Affiliations: 
Georgia Institute of Technology, Atlanta, GA 
 Iowa State University, Ames, IA, United States 
Website:
https://faculty.cc.gatech.edu/~saluru/
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pan T, Chockalingam SP, Aluru M, Aluru S. MCPNet: A parallel maximum capacity-based genome-scale gene network construction framework. Bioinformatics (Oxford, England). PMID 37289522 DOI: 10.1093/bioinformatics/btad373  0.337
2021 Zhang H, Song L, Wang X, Cheng H, Wang C, Meyer CA, Liu T, Tang M, Aluru S, Yue F, Liu XS, Li H. Fast alignment and preprocessing of chromatin profiles with Chromap. Nature Communications. 12: 6566. PMID 34772935 DOI: 10.1038/s41467-021-26865-w  0.377
2021 Zhang H, Li H, Jain C, Cheng H, Au KF, Li H, Aluru S. Real-time mapping of nanopore raw signals. Bioinformatics (Oxford, England). 37: i477-i483. PMID 34252938 DOI: 10.1093/bioinformatics/btab264  0.31
2018 Jain C, Rodriguez-R LM, Phillippy AM, Konstantinidis KT, Aluru S. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. Nature Communications. 9: 5114. PMID 30504855 DOI: 10.1038/S41467-018-07641-9  0.58
2018 Jain C, Koren S, Dilthey A, Phillippy AM, Aluru S. A fast adaptive algorithm for computing whole-genome homology maps. Bioinformatics (Oxford, England). 34: i748-i756. PMID 30423094 DOI: 10.1093/Bioinformatics/Bty597  0.529
2015 Misra S, Pamnany K, Aluru S. Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel®Xeon Phi™ Coprocessor. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 1008-20. PMID 26451815 DOI: 10.1109/Tcbb.2015.2415931  0.416
2013 Aluru M, Zola J, Nettleton D, Aluru S. Reverse engineering and analysis of large genome-scale gene networks. Nucleic Acids Research. 41: e24. PMID 23042249 DOI: 10.1093/Nar/Gks904  0.521
2011 Yang X, Aluru S, Dorman KS. Repeat-aware modeling and correction of short read errors. Bmc Bioinformatics. 12: S52. PMID 21342585 DOI: 10.1186/1471-2105-12-S1-S52  0.567
2011 Yu X, Li L, Zola J, Aluru M, Ye H, Foudree A, Guo H, Anderson S, Aluru S, Liu P, Rodermel S, Yin Y. A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 65: 634-46. PMID 21214652 DOI: 10.1111/J.1365-313X.2010.04449.X  0.353
2010 Yang X, Dorman KS, Aluru S. Reptile: representative tiling for short read error correction. Bioinformatics (Oxford, England). 26: 2526-33. PMID 20834037 DOI: 10.1093/bioinformatics/btq468  0.328
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Aluru S, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534  0.594
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Aluru S, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728  0.649
2009 Jackson BG, Schnable PS, Aluru S. Parallel short sequence assembly of transcriptomes. Bmc Bioinformatics. 10: S14. PMID 19208113 DOI: 10.1186/1471-2105-10-S1-S14  0.453
2007 Emrich SJ, Li L, Wen TJ, Yandeau-Nelson MD, Fu Y, Guo L, Chou HH, Aluru S, Ashlock DA, Schnable PS. Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution. Genetics. 175: 429-39. PMID 17110490 DOI: 10.1534/Genetics.106.064006  0.659
2006 Kalyanaraman A, Aluru S. Efficient algorithms and software for detection of full-lengh LTR retrotransposons Journal of Bioinformatics and Computational Biology. 4: 197-216. PMID 16819780 DOI: 10.1142/S021972000600203X  0.484
2005 Kalyanaraman A, Aluru S. Efficient algorithms and software for detection of full-length LTR retrotransposons Proceedings - 2005 Ieee Computational Systems Bioinformatics Conference, Csb 2005. 2005: 56-64. PMID 16447962 DOI: 10.1109/CSB.2005.31  0.467
2005 Fu Y, Emrich SJ, Guo L, Wen TJ, Ashlock DA, Aluru S, Schnable PS. Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. Proceedings of the National Academy of Sciences of the United States of America. 102: 12282-7. PMID 16103354 DOI: 10.1073/Pnas.0503394102  0.675
2004 Ko P, Narayanan M, Kalyanaraman A, Aluru S. Space-conserving optimal DNA-protein alignment Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference.. 80-88. PMID 16448002  0.301
2004 Emrich SJ, Aluru S, Fu Y, Wen TJ, Narayanan M, Guo L, Ashlock DA, Schnable PS. A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics (Oxford, England). 20: 140-7. PMID 14734303 DOI: 10.1093/Bioinformatics/Bth017  0.637
2003 Huang X, Wang J, Aluru S, Yang SP, Hillier L. PCAP: a whole-genome assembly program. Genome Research. 13: 2164-70. PMID 12952883 DOI: 10.1101/gr.1390403  0.432
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