| Year |
Citation |
Score |
| 2024 |
Rogers CD, Amemiya C, Arur S, Babonis L, Barresi M, Bartlett M, Behringer R, Benham-Pyle B, Bergmann D, Blackman B, Brown CT, Browne B, Camacho J, Chabu CY, Chow I, et al. Pluripotency of a founding field: rebranding developmental biology. Development (Cambridge, England). 151. PMID 38345109 DOI: 10.1242/dev.202342 |
0.514 |
|
| 2023 |
Amemiya CT. Editorial. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 340: 481-483. PMID 38031502 DOI: 10.1002/jez.b.23229 |
0.485 |
|
| 2023 |
Amemiya C. In the spotlight-Established researcher. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 340: 479-480. PMID 37376917 DOI: 10.1002/jez.b.23215 |
0.485 |
|
| 2023 |
Vandepas LE, Tassia MG, Halanych KM, Amemiya CT. Unexpected Distribution of Chitin and across Soft-Bodied Cnidarians. Biomolecules. 13. PMID 37238647 DOI: 10.3390/biom13050777 |
0.796 |
|
| 2023 |
Amemiya C. Genome reveals how the skate got its wings. Nature. 616: 440-441. PMID 37045951 DOI: 10.1038/d41586-023-00192-0 |
0.65 |
|
| 2021 |
Heimroth RD, Casadei E, Benedicenti O, Amemiya CT, Muñoz P, Salinas I. The lungfish cocoon is a living tissue with antimicrobial functions. Science Advances. 7: eabj0829. PMID 34788085 DOI: 10.1126/sciadv.abj0829 |
0.532 |
|
| 2021 |
Phillips M, Wheeler AC, Robinson MJ, Leppert V, Jia M, Rolandi M, Hirst LS, Amemiya CT. Colloidal structure and proton conductivity of the gel within the electrosensory organs of cartilaginous fishes. Iscience. 24: 102947. PMID 34458698 DOI: 10.1016/j.isci.2021.102947 |
0.765 |
|
| 2021 |
Rekedal KL, Hassan KM, Amemiya CT. Characterization of the variable lymphocyte receptor B genes of a freshwater nonparasitic lamprey species, Lampetra hubbsi. Developmental and Comparative Immunology. 104241. PMID 34433086 DOI: 10.1016/j.dci.2021.104241 |
0.756 |
|
| 2020 |
Phillips M, Tang WJ, Robinson M, Daza DO, Hassan K, Leppert V, Hirst LS, Amemiya CT. Evidence of chitin in the ampullae of Lorenzini of chondrichthyan fishes. Current Biology : Cb. 30: R1254-R1255. PMID 33080193 DOI: 10.1016/j.cub.2020.08.014 |
0.805 |
|
| 2019 |
Hassan KMA, Hansen JD, Herrin BR, Amemiya CT. Generation of Lamprey Monoclonal Antibodies (Lampribodies) Using the Phage Display System. Biomolecules. 9. PMID 31842457 DOI: 10.3390/biom9120868 |
0.576 |
|
| 2019 |
Johnson R, Searle BC, Nunn BL, Gilmore JM, Phillips M, Amemiya CT, Heck M, MacCoss MJ. Assessing protein sequence database suitability using de novo sequencing. Molecular & Cellular Proteomics : McP. PMID 31732549 DOI: 10.1074/Mcp.Tir119.001752 |
0.783 |
|
| 2019 |
Hockman D, Chong-Morrison V, Green SA, Gavriouchkina D, Candido-Ferreira I, Ling ITC, Williams RM, Amemiya CT, Smith JJ, Bronner ME, Sauka-Spengler T. A genome-wide assessment of the ancestral neural crest gene regulatory network. Nature Communications. 10: 4689. PMID 31619682 DOI: 10.1038/S41467-019-12687-4 |
0.701 |
|
| 2019 |
Montroni D, Zhang X, Leonard J, Kaya M, Amemiya C, Falini G, Rolandi M. Structural characterization of the buccal mass of Ariolimax californicus (Gastropoda; Stylommatophora). Plos One. 14: e0212249. PMID 31390363 DOI: 10.1371/Journal.Pone.0212249 |
0.664 |
|
| 2018 |
Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, ... ... Amemiya CT, et al. Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution. Nature Genetics. PMID 30224652 DOI: 10.1038/S41588-018-0199-4 |
0.794 |
|
| 2018 |
Pancer Z, Amemiya CT, Ehrhardt GRA, Ceitlin J, Gartland GL, Cooper MD. Pillars Article: Somatic Diversification of Variable Lymphocyte Receptors in the Agnathan Sea Lamprey. . 2004. 430: 174-180. Journal of Immunology (Baltimore, Md. : 1950). 201: 1336-1342. PMID 30127063 |
0.515 |
|
| 2018 |
Kapp FG, Perlin JR, Hagedorn EJ, Gansner JM, Schwarz DE, O'Connell LA, Johnson NS, Amemiya C, Fisher DE, Wölfle U, Trompouki E, Niemeyer CM, Driever W, Zon LI. Protection from UV light is an evolutionarily conserved feature of the haematopoietic niche. Nature. PMID 29899448 DOI: 10.1038/S41586-018-0213-0 |
0.537 |
|
| 2018 |
Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, ... ... Amemiya CT, et al. Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution. Nature Genetics. PMID 29674745 DOI: 10.1038/S41588-018-0075-2 |
0.8 |
|
| 2018 |
Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, ... ... Amemiya CT, et al. The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution. Nature Genetics. PMID 29358652 DOI: 10.1038/S41588-017-0036-1 |
0.834 |
|
| 2017 |
Kaya M, Mujtaba M, Ehrlich H, Salaberria AM, Baran T, Amemiya CT, Galli R, Akyuz L, Sargin I, Labidi J. On chemistry of γ-chitin. Carbohydrate Polymers. 176: 177-186. PMID 28927596 DOI: 10.1016/J.Carbpol.2017.08.076 |
0.656 |
|
| 2017 |
Quinlan EM, King JJ, Amemiya CT, Hsu E, Larijani M. Biochemical regulatory features of AID remain conserved from lamprey to humans. Molecular and Cellular Biology. PMID 28716949 DOI: 10.1128/MCB.00077-17 |
0.588 |
|
| 2017 |
Symonová R, Havelka M, Amemiya CT, Howell WM, Kořínková T, Flajšhans M, Gela D, Ráb P. Molecular cytogenetic differentiation of paralogs of Hox paralogs in duplicated and re-diploidized genome of the North American paddlefish (Polyodon spathula). Bmc Genetics. 18: 19. PMID 28253860 DOI: 10.1186/s12863-017-0484-8 |
0.68 |
|
| 2017 |
Vandepas LE, Warren KJ, Amemiya CT, Browne WE. Establishing and maintaining primary cell cultures derived from the ctenophore Mnemiopsis leidyi. The Journal of Experimental Biology. PMID 28137975 DOI: 10.1242/Jeb.152371 |
0.755 |
|
| 2017 |
Eslami Rasekh M, Chiatante G, Miroballo M, Tang J, Ventura M, Amemiya CT, Eichler EE, Antonacci F, Alkan C. Discovery of large genomic inversions using long range information. Bmc Genomics. 18: 65. PMID 28073353 DOI: 10.1186/S12864-016-3444-1 |
0.67 |
|
| 2016 |
Lima SQ, Costa CM, Amemiya CT, Schneider I. Morphological And Molecular Analyses of an Anatomical Novelty: The Pelvic Fin Filaments of the South American Lungfish. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 27862964 DOI: 10.1002/Jez.B.22711 |
0.549 |
|
| 2016 |
Nogueira AF, Costa CM, Lorena J, Moreira RN, Frota-Lima GN, Furtado C, Robinson M, Amemiya CT, Darnet S, Schneider I. Tetrapod limb and sarcopterygian fin regeneration share a core genetic programme. Nature Communications. 7: 13364. PMID 27804976 DOI: 10.1038/Ncomms13364 |
0.671 |
|
| 2016 |
Presnell JS, Vandepas LE, Warren KJ, Swalla BJ, Amemiya CT, Browne WE. The Presence of a Functionally Tripartite Through-Gut in Ctenophora Has Implications for Metazoan Character Trait Evolution. Current Biology : Cb. PMID 27568594 DOI: 10.1016/J.Cub.2016.08.019 |
0.789 |
|
| 2016 |
Koch J, Lüdemann J, Spies R, Last M, Amemiya CT, Burmester T. Unusual diversity of myoglobin genes in the lungfish. Molecular Biology and Evolution. PMID 27512111 DOI: 10.1093/molbev/msw159 |
0.591 |
|
| 2016 |
Nuttle X, Giannuzzi G, Duyzend MH, Schraiber JG, Narvaiza I, Sudmant PH, Penn O, Chiatante G, Malig M, Huddleston J, Benner C, Camponeschi F, Ciofi-Baffoni S, Stessman HA, Marchetto MC, ... ... Amemiya CT, et al. Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility. Nature. PMID 27487209 DOI: 10.1038/Nature19075 |
0.712 |
|
| 2016 |
Josberger EE, Hassanzadeh P, Deng Y, Sohn J, Rego MJ, Amemiya CT, Rolandi M. Proton conductivity in ampullae of Lorenzini jelly. Science Advances. 2: e1600112. PMID 27386543 DOI: 10.1126/Sciadv.1600112 |
0.535 |
|
| 2016 |
Bryant SA, Herdy JR, Amemiya CT, Smith JJ. Characterization of Somatically-Eliminated Genes During Development of the Sea Lamprey (Petromyzon marinus). Molecular Biology and Evolution. PMID 27288344 DOI: 10.1093/molbev/msw104 |
0.719 |
|
| 2016 |
Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, ... ... Amemiya CT, et al. Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48: 700. PMID 27230688 DOI: 10.1038/Ng0616-700C |
0.809 |
|
| 2016 |
Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, ... ... Amemiya CT, et al. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48: 427-37. PMID 26950095 DOI: 10.1038/Ng.3526 |
0.834 |
|
| 2015 |
Tacchi L, Larragoite ET, Muñoz P, Amemiya CT, Salinas I. African Lungfish Reveal the Evolutionary Origins of Organized Mucosal Lymphoid Tissue in Vertebrates. Current Biology : Cb. 25: 2417-24. PMID 26344090 DOI: 10.1016/j.cub.2015.07.066 |
0.59 |
|
| 2015 |
Miller HC, O'Meally D, Ezaz T, Amemiya C, Marshall-Graves JA, Edwards S. Major Histocompatibility Complex Genes Map to Two Chromosomes in an Evolutionarily Ancient Reptile, the Tuatara Sphenodon punctatus. G3 (Bethesda, Md.). PMID 25953959 DOI: 10.1534/G3.115.017467 |
0.64 |
|
| 2015 |
Tang WJ, Fernandez JG, Sohn JJ, Amemiya CT. Chitin is endogenously produced in vertebrates. Current Biology : Cb. 25: 897-900. PMID 25772447 DOI: 10.1016/j.cub.2015.01.058 |
0.547 |
|
| 2014 |
Antonacci F, Dennis MY, Huddleston J, Sudmant PH, Steinberg KM, Rosenfeld JA, Miroballo M, Graves TA, Vives L, Malig M, Denman L, Raja A, Stuart A, Tang J, Munson B, ... ... Amemiya CT, et al. Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability. Nature Genetics. 46: 1293-302. PMID 25326701 DOI: 10.1038/Ng.3120 |
0.639 |
|
| 2014 |
Kawasaki K, Amemiya CT. SCPP genes in the coelacanth: tissue mineralization genes shared by sarcopterygians. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 322: 390-402. PMID 25243252 DOI: 10.1002/jez.b.22546 |
0.575 |
|
| 2014 |
Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, ... ... Amemiya C, et al. The genomic substrate for adaptive radiation in African cichlid fish. Nature. 513: 375-81. PMID 25186727 DOI: 10.1038/Nature13726 |
0.659 |
|
| 2014 |
Chen X, Bracht JR, Goldman AD, Dolzhenko E, Clay DM, Swart EC, Perlman DH, Doak TG, Stuart A, Amemiya CT, Sebra RP, Landweber LF. The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development. Cell. 158: 1187-98. PMID 25171416 DOI: 10.1016/J.Cell.2014.07.034 |
0.683 |
|
| 2014 |
Amemiya CT, Dorrington R, Meyer A. The coelacanth and its genome. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 322: 317-21. PMID 25059403 DOI: 10.1002/Jez.B.22583 |
0.639 |
|
| 2014 |
Saha NR, Ota T, Litman GW, Hansen J, Parra Z, Hsu E, Buonocore F, Canapa A, Cheng JF, Amemiya CT. Genome complexity in the coelacanth is reflected in its adaptive immune system. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 322: 438-63. PMID 24464682 DOI: 10.1002/Jez.B.22558 |
0.826 |
|
| 2014 |
Robinson M, Amemiya CT. Coelacanths. Current Biology : Cb. 24: R62-3. PMID 24456974 DOI: 10.1016/j.cub.2013.10.027 |
0.624 |
|
| 2014 |
Nitsche A, Doose G, Tafer H, Robinson M, Saha NR, Gerdol M, Canapa A, Hoffmann S, Amemiya CT, Stadler PF. Atypical RNAs in the coelacanth transcriptome. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 322: 342-51. PMID 24174405 DOI: 10.1002/Jez.B.22542 |
0.608 |
|
| 2013 |
Amemiya CT, Wagner GP. Francis (Frank) Hugh Ruddle (1929-2013). Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 320: 273-5. PMID 23650107 DOI: 10.1002/jez.b.22509 |
0.473 |
|
| 2013 |
Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, et al. The African coelacanth genome provides insights into tetrapod evolution. Nature. 496: 311-6. PMID 23598338 DOI: 10.1038/Nature12027 |
0.828 |
|
| 2013 |
Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28 |
0.689 |
|
| 2013 |
Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, ... ... Amemiya CT, et al. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nature Genetics. 45: 415-21, 421e1-2. PMID 23435085 DOI: 10.1038/Ng.2568 |
0.811 |
|
| 2012 |
Sumiyama K, Miyake T, Grimwood J, Stuart A, Dickson M, Schmutz J, Ruddle FH, Myers RM, Amemiya CT. Theria-specific homeodomain and cis-regulatory element evolution of the Dlx3-4 bigene cluster in 12 different mammalian species. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 318: 639-50. PMID 22951979 DOI: 10.1002/Jez.B.22469 |
0.809 |
|
| 2012 |
Crow KD, Smith CD, Cheng JF, Wagner GP, Amemiya CT. An independent genome duplication inferred from Hox paralogs in the American paddlefish--a representative basal ray-finned fish and important comparative reference. Genome Biology and Evolution. 4: 937-53. PMID 22851613 DOI: 10.1093/gbe/evs067 |
0.683 |
|
| 2012 |
Smith JJ, Baker C, Eichler EE, Amemiya CT. Genetic consequences of programmed genome rearrangement. Current Biology : Cb. 22: 1524-9. PMID 22818913 DOI: 10.1016/j.cub.2012.06.028 |
0.761 |
|
| 2012 |
Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, Johnson J, Swofford R, Pirun M, Zody MC, White S, Birney E, Searle S, Schmutz J, Grimwood J, Dickson MC, ... ... Amemiya C, et al. The genomic basis of adaptive evolution in threespine sticklebacks. Nature. 484: 55-61. PMID 22481358 DOI: 10.1038/Nature10944 |
0.672 |
|
| 2012 |
Cheng Y, Stuart A, Morris K, Taylor R, Siddle H, Deakin J, Jones M, Amemiya CT, Belov K. Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC. Bmc Genomics. 13: 87. PMID 22404855 DOI: 10.1186/1471-2164-13-87 |
0.656 |
|
| 2012 |
Deakin JE, Bender HS, Pearse AM, Rens W, O'Brien PC, Ferguson-Smith MA, Cheng Y, Morris K, Taylor R, Stuart A, Belov K, Amemiya CT, Murchison EP, Papenfuss AT, Graves JA. Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour. Plos Genetics. 8: e1002483. PMID 22359511 DOI: 10.1371/Journal.Pgen.1002483 |
0.607 |
|
| 2012 |
Smith JJ, Sumiyama K, Amemiya CT. A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome. Molecular Biology and Evolution. 29: 985-93. PMID 22045999 DOI: 10.1093/molbev/msr267 |
0.749 |
|
| 2011 |
Raincrow JD, Dewar K, Stocsits C, Prohaska SJ, Amemiya CT, Stadler PF, Chiu CH. Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 316: 451-64. PMID 21688387 DOI: 10.1002/Jez.B.21420 |
0.651 |
|
| 2011 |
Janes DE, Valenzuela N, Ezaz T, Amemiya C, Edwards SV. Sex chromosome evolution in amniotes: applications for bacterial artificial chromosome libraries. Journal of Biomedicine & Biotechnology. 2011: 132975. PMID 20981143 DOI: 10.1155/2011/132975 |
0.577 |
|
| 2010 |
Mannaert A, Amemiya CT, Bossuyt F. Comparative analyses of vertebrate posterior HoxD clusters reveal atypical cluster architecture in the caecilian Typhlonectes natans. Bmc Genomics. 11: 658. PMID 21106068 DOI: 10.1186/1471-2164-11-658 |
0.655 |
|
| 2010 |
Detrich HW, Amemiya CT. Antarctic notothenioid fishes: genomic resources and strategies for analyzing an adaptive radiation. Integrative and Comparative Biology. 50: 1009-17. PMID 21082069 DOI: 10.1093/icb/icq071 |
0.662 |
|
| 2010 |
Soler L, Conte MA, Katagiri T, Howe AE, Lee BY, Amemiya C, Stuart A, Dossat C, Poulain J, Johnson J, Di Palma F, Lindblad-Toh K, Baroiller JF, D'Cotta H, Ozouf-Costaz C, et al. Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus). Bmc Genomics. 11: 636. PMID 21080946 DOI: 10.1186/1471-2164-11-636 |
0.663 |
|
| 2010 |
Lang M, Hadzhiev Y, Siegel N, Amemiya CT, Parada C, Strähle U, Becker MB, Müller F, Meyer A. Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position. Evodevo. 1: 11. PMID 21047394 DOI: 10.1186/2041-9139-1-11 |
0.674 |
|
| 2010 |
Chen L, Zhao P, Wells L, Amemiya CT, Condie BG, Manley NR. Mouse and zebrafish Hoxa3 orthologues have nonequivalent in vivo protein function. Proceedings of the National Academy of Sciences of the United States of America. 107: 10555-60. PMID 20498049 DOI: 10.1073/Pnas.1005129107 |
0.604 |
|
| 2010 |
Parchem RJ, Poulin F, Stuart AB, Amemiya CT, Patel NH. BAC library for the amphipod crustacean, Parhyale hawaiensis. Genomics. 95: 261-7. PMID 20298775 DOI: 10.1016/J.Ygeno.2010.03.005 |
0.681 |
|
| 2010 |
Detrich HW, Stuart A, Schoenborn M, Parker SK, Methé BA, Amemiya CT. Genome enablement of the notothenioidei: genome size estimates from 11 species and BAC libraries from 2 representative taxa. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 314: 369-81. PMID 20235119 DOI: 10.1002/jez.b.21341 |
0.666 |
|
| 2010 |
Smith JJ, Stuart AB, Sauka-Spengler T, Clifton SW, Amemiya CT. Development and analysis of a germline BAC resource for the sea lamprey, a vertebrate that undergoes substantial chromatin diminution Chromosoma. 119: 381-389. PMID 20195622 DOI: 10.1007/S00412-010-0263-Z |
0.736 |
|
| 2010 |
Amemiya CT, Powers TP, Prohaska SJ, Grimwood J, Schmutz J, Dickson M, Miyake T, Schoenborn MA, Myers RM, Ruddle FH, Stadler PF. Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome. Proceedings of the National Academy of Sciences of the United States of America. 107: 3622-7. PMID 20139301 DOI: 10.1073/Pnas.0914312107 |
0.836 |
|
| 2010 |
Saha NR, Smith J, Amemiya CT. Evolution of adaptive immune recognition in jawless vertebrates. Seminars in Immunology. 22: 25-33. PMID 20056434 DOI: 10.1016/J.Smim.2009.12.002 |
0.665 |
|
| 2009 |
Larson S, Tinnemore D, Amemiya C. Microsatellite loci within sixgill sharks, Hexanchus griseus. Molecular Ecology Resources. 9: 978-81. PMID 21564811 DOI: 10.1111/j.1755-0998.2009.02531.x |
0.526 |
|
| 2009 |
Danilova N, Amemiya CT. Going adaptive: the saga of antibodies. Annals of the New York Academy of Sciences. 1168: 130-55. PMID 19566706 DOI: 10.1111/j.1749-6632.2009.04881.x |
0.608 |
|
| 2009 |
Smith JJ, Antonacci F, Eichler EE, Amemiya CT. Programmed loss of millions of base pairs from a vertebrate genome. Proceedings of the National Academy of Sciences of the United States of America. 106: 11212-7. PMID 19561299 DOI: 10.1073/Pnas.0902358106 |
0.769 |
|
| 2009 |
Modisakeng KW, Jiwaji M, Pesce ER, Robert J, Amemiya CT, Dorrington RA, Blatch GL. Isolation of a Latimeria menadoensis heat shock protein 70 (Lmhsp70) that has all the features of an inducible gene and encodes a functional molecular chaperone. Molecular Genetics and Genomics : Mgg. 282: 185-96. PMID 19444470 DOI: 10.1007/S00438-009-0456-4 |
0.553 |
|
| 2009 |
Crow KD, Amemiya CT, Roth J, Wagner GP. Hypermutability of HoxA13A and functional divergence from its paralog are associated with the origin of a novel developmental feature in zebrafish and related taxa (Cypriniformes). Evolution; International Journal of Organic Evolution. 63: 1574-92. PMID 19222565 DOI: 10.1111/j.1558-5646.2009.00657.x |
0.648 |
|
| 2009 |
Suda Y, Kurokawa D, Takeuchi M, Kajikawa E, Kuratani S, Amemiya C, Aizawa S. Evolution of Otx paralogue usages in early patterning of the vertebrate head Developmental Biology. 325: 282-295. PMID 18848537 DOI: 10.1016/J.Ydbio.2008.09.018 |
0.625 |
|
| 2008 |
Dishaw LJ, Mueller MG, Gwatney N, Cannon JP, Haire RN, Litman RT, Amemiya CT, Ota T, Rowen L, Glusman G, Litman GW. Genomic complexity of the variable region-containing chitin-binding proteins in amphioxus. Bmc Genetics. 9: 78. PMID 19046437 DOI: 10.1186/1471-2156-9-78 |
0.823 |
|
| 2008 |
Trede NS, Ota T, Kawasaki H, Paw BH, Katz T, Demarest B, Hutchinson S, Zhou Y, Hersey C, Zapata A, Amemiya CT, Zon LI. Zebrafish mutants with disrupted early T-cell and thymus development identified in early pressure screen. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 237: 2575-84. PMID 18729230 DOI: 10.1002/Dvdy.21683 |
0.763 |
|
| 2008 |
Gwee PC, Amemiya CT, Brenner S, Venkatesh B. Sequence and organization of coelacanth neurohypophysial hormone genes: evolutionary history of the vertebrate neurohypophysial hormone gene locus. Bmc Evolutionary Biology. 8: 93. PMID 18366747 DOI: 10.1186/1471-2148-8-93 |
0.666 |
|
| 2008 |
Amemiya CT, Prohaska SJ, Hill-Force A, Cook A, Wasserscheid J, Ferrier DE, Pascual-Anaya J, Garcia-Fernà ndez J, Dewar K, Stadler PF. The amphioxus Hox cluster: characterization, comparative genomics, and evolution. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 310: 465-77. PMID 18351584 DOI: 10.1002/Jez.B.21213 |
0.63 |
|
| 2008 |
Yu WP, Rajasegaran V, Yew K, Loh WL, Tay BH, Amemiya CT, Brenner S, Venkatesh B. Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster. Proceedings of the National Academy of Sciences of the United States of America. 105: 3819-24. PMID 18319338 DOI: 10.1073/pnas.0800398105 |
0.686 |
|
| 2007 |
Amemiya CT, Saha NR, Zapata A. Evolution and development of immunological structures in the lamprey. Current Opinion in Immunology. 19: 535-41. PMID 17875388 DOI: 10.1016/J.Coi.2007.08.003 |
0.622 |
|
| 2007 |
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, et al. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 447: 167-77. PMID 17495919 DOI: 10.1038/Nature05805 |
0.683 |
|
| 2007 |
Trede NS, Medenbach J, Damianov A, Hung LH, Weber GJ, Paw BH, Zhou Y, Hersey C, Zapata A, Keefe M, Barut BA, Stuart AB, Katz T, Amemiya CT, Zon LI, et al. Network of coregulated spliceosome components revealed by zebrafish mutant in recycling factor p110. Proceedings of the National Academy of Sciences of the United States of America. 104: 6608-13. PMID 17416673 DOI: 10.1073/Pnas.0701919104 |
0.534 |
|
| 2006 |
Walter RB, Ju Z, Martinez A, Amemiya C, Samollow PB. Genomic resources for Xiphophorus research. Zebrafish. 3: 11-22. PMID 18248243 DOI: 10.1089/zeb.2006.3.11 |
0.663 |
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| 2006 |
Kurokawa D, Sakurai Y, Inoue A, Nakayama R, Takasaki N, Suda Y, Miyake T, Amemiya CT, Aizawa S. Evolutionary constraint on Otx2 neuroectoderm enhancers-deep conservation from skate to mouse and unique divergence in teleost Proceedings of the National Academy of Sciences of the United States of America. 103: 19350-19355. PMID 17159156 DOI: 10.1073/pnas.0604686103 |
0.795 |
|
| 2006 |
Wang Z, Miyake T, Edwards SV, Amemiya CT. Tuatara (Sphenodon) genomics: BAC library construction, sequence survey, and application to the DMRT gene family. The Journal of Heredity. 97: 541-8. PMID 17135461 DOI: 10.1093/JHERED/ESL040 |
0.838 |
|
| 2006 |
Amemiya CT, Gomez-Chiarri M. Comparative genomics in vertebrate evolution and development. Journal of Experimental Zoology. Part a, Comparative Experimental Biology. 305: 672-82. PMID 16902957 DOI: 10.1002/Jez.A.308 |
0.658 |
|
| 2006 |
Amemiya CT, Wagner GP. Animal evolution: when did the 'Hox system' arise? Current Biology : Cb. 16: R546-8. PMID 16860733 DOI: 10.1016/j.cub.2006.06.051 |
0.605 |
|
| 2006 |
Cannon JP, Haire RN, Mueller MG, Litman RT, Eason DD, Tinnemore D, Amemiya CT, Ota T, Litman GW. Ancient divergence of a complex family of immune-type receptor genes. Immunogenetics. 58: 362-73. PMID 16738934 DOI: 10.1007/S00251-006-0112-7 |
0.803 |
|
| 2006 |
Mazet F, Amemiya CT, Shimeld SM. An ancient Fox gene cluster in bilaterian animals. Current Biology : Cb. 16: R314-6. PMID 16682334 DOI: 10.1016/j.cub.2006.03.088 |
0.569 |
|
| 2006 |
Lang M, Miyake T, Braasch I, Tinnemore D, Siegel N, Salzburger W, Amemiya CT, Meyer A. A BAC library of the East African haplochromine cichlid fish Astatotilapia burtoni. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 306: 35-44. PMID 16254984 DOI: 10.1002/Jez.B.21068 |
0.823 |
|
| 2006 |
Crow KD, Stadler PF, Lynch VJ, Amemiya C, Wagner GP. The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts. Molecular Biology and Evolution. 23: 121-36. PMID 16162861 DOI: 10.1093/Molbev/Msj020 |
0.624 |
|
| 2005 |
Amemiya CT, Miyake T, Rast JP. Echinoderms. Current Biology : Cb. 15: R944-6. PMID 16332519 DOI: 10.1016/j.cub.2005.11.026 |
0.76 |
|
| 2005 |
Ferrier DE, Dewar K, Cook A, Chang JL, Hill-Force A, Amemiya C. The chordate ParaHox cluster. Current Biology : Cb. 15: R820-2. PMID 16243016 DOI: 10.1016/j.cub.2005.10.014 |
0.519 |
|
| 2005 |
Wagner GP, Takahashi K, Lynch V, Prohaska SJ, Fried C, Stadler PF, Amemiya C. Molecular evolution of duplicated ray finned fish HoxA clusters: increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences. Journal of Molecular Evolution. 60: 665-76. PMID 15983874 DOI: 10.1007/S00239-004-0252-Z |
0.61 |
|
| 2005 |
Pancer Z, Saha NR, Kasamatsu J, Suzuki T, Amemiya CT, Kasahara M, Cooper MD. Variable lymphocyte receptors in hagfish. Proceedings of the National Academy of Sciences of the United States of America. 102: 9224-9. PMID 15964979 DOI: 10.1073/Pnas.0503792102 |
0.611 |
|
| 2005 |
Minguillón C, Gardenyes J, Serra E, Castro LF, Hill-Force A, Holland PW, Amemiya CT, Garcia-Fernàndez J. No more than 14: the end of the amphioxus Hox cluster. International Journal of Biological Sciences. 1: 19-23. PMID 15951846 DOI: 10.7150/Ijbs.1.19 |
0.607 |
|
| 2005 |
Metscher BD, Takahashi K, Crow K, Amemiya C, Nonaka DF, Wagner GP. Expression of Hoxa-11 and Hoxa-13 in the pectoral fin of a basal ray-finned fish, Polyodon spathula: implications for the origin of tetrapod limbs. Evolution & Development. 7: 186-95. PMID 15876191 DOI: 10.1111/J.1525-142X.2005.05021.X |
0.616 |
|
| 2005 |
Force A, Cresko WA, Pickett FB, Proulx SR, Amemiya C, Lynch M. The origin of subfunctions and modular gene regulation. Genetics. 170: 433-46. PMID 15781713 DOI: 10.1534/Genetics.104.027607 |
0.794 |
|
| 2005 |
Margulies EH, Maduro VV, Thomas PJ, Tomkins JP, Amemiya CT, Luo M, Green ED. Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes. Proceedings of the National Academy of Sciences of the United States of America. 102: 3354-9. PMID 15718282 DOI: 10.1073/pnas.0408539102 |
0.669 |
|
| 2005 |
Tanzer A, Amemiya CT, Kim CB, Stadler PF. Evolution of microRNAs located within Hox gene clusters. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 304: 75-85. PMID 15643628 DOI: 10.1002/Jez.B.21021 |
0.611 |
|
| 2005 |
Miyake T, Amemiya CT. BAC libraries and comparative genomics of aquatic chordate species. Comparative Biochemistry and Physiology. Toxicology & Pharmacology : Cbp. 138: 233-44. PMID 15533781 DOI: 10.1016/j.cca.2004.07.001 |
0.834 |
|
| 2005 |
Stavnezer J, Amemiya CT. Evolution of isotype switching. Seminars in Immunology. 16: 257-75. PMID 15522624 DOI: 10.1016/j.smim.2004.08.005 |
0.571 |
|
| 2005 |
Wang WC, Anand S, Powell DR, Pawashe AB, Amemiya CT, Shashikant CS. Comparative cis-regulatory analyses identify new elements of the mouse Hoxc8 early enhancer. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 302: 436-45. PMID 15384168 DOI: 10.1002/jez.b.21009 |
0.586 |
|
| 2004 |
Force A, Shashikant CS, Stadler P, Amemiya CT. Comparative genomics, cis-regulatory elements, and gene duplication Methods in Cell Biology. 77: 545-561. PMID 15602931 DOI: 10.1016/S0091-679X(04)77029-6 |
0.835 |
|
| 2004 |
Noonan JP, Grimwood J, Danke J, Schmutz J, Dickson M, Amemiya CT, Myers RM. Coelacanth genome sequence reveals the evolutionary history of vertebrate genes. Genome Research. 14: 2397-405. PMID 15545497 DOI: 10.1101/Gr.2972804 |
0.691 |
|
| 2004 |
Yoder JA, Litman RT, Mueller MG, Desai S, Dobrinski KP, Montgomery JS, Buzzeo MP, Ota T, Amemiya CT, Trede NS, Wei S, Djeu JY, Humphray S, Jekosch K, Hernandez Prada JA, et al. Resolution of the novel immune-type receptor gene cluster in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 101: 15706-11. PMID 15496470 DOI: 10.1073/Pnas.0405242101 |
0.8 |
|
| 2004 |
Shashikant C, Bolanowski SA, Danke J, Amemiya CT. Hoxc8 early enhancer of the Indonesian coelacanth, Latimeria menadoensis. Journal of Experimental Zoology. 302: 557-563. PMID 15470754 DOI: 10.1002/Jez.B.21018 |
0.654 |
|
| 2004 |
Pancer Z, Amemiya CT, Ehrhardt GR, Ceitlin J, Gartland GL, Cooper MD. Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey. Nature. 430: 174-80. PMID 15241406 DOI: 10.1038/Nature02740 |
0.622 |
|
| 2004 |
Prohaska SJ, Fried C, Amemiya CT, Ruddle FH, Wagner GP, Stadler PF. The shark HoxN cluster is homologous to the human HoxD cluster. Journal of Molecular Evolution. 58: 212-7. PMID 15042342 DOI: 10.1007/S00239-003-2545-Z |
0.538 |
|
| 2004 |
Powers TP, Amemiya CT. Evidence for a Hox14 paralog group in vertebrates. Current Biology : Cb. 14: R183-4. PMID 15028231 DOI: 10.1016/j.cub.2004.02.015 |
0.671 |
|
| 2004 |
Danke J, Miyake T, Powers T, Schein J, Shin H, Bosdet I, Erdmann M, Caldwell R, Amemiya CT. Genome resource for the Indonesian coelacanth, Latimeria menadoensis. Journal of Experimental Zoology. Part a, Comparative Experimental Biology. 301: 228-34. PMID 14981781 DOI: 10.1002/Jez.A.20024 |
0.821 |
|
| 2004 |
Chiu CH, Dewar K, Wagner GP, Takahashi K, Ruddle F, Ledje C, Bartsch P, Scemama JL, Stellwag E, Fried C, Prohaska SJ, Stadler PF, Amemiya CT. Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution. Genome Research. 14: 11-7. PMID 14707166 DOI: 10.1101/Gr.1712904 |
0.605 |
|
| 2004 |
Amores A, Suzuki T, Yan YL, Pomeroy J, Singer A, Amemiya C, Postlethwait JH. Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish. Genome Research. 14: 1-10. PMID 14707165 DOI: 10.1101/Gr.1717804 |
0.715 |
|
| 2003 |
Traver D, Herbomel P, Patton EE, Murphey RD, Yoder JA, Litman GW, Catic A, Amemiya CT, Zon LI, Trede NS. The zebrafish as a model organism to study development of the immune system. Advances in Immunology. 81: 253-330. PMID 14711058 DOI: 10.1016/S0065-2776(03)81007-6 |
0.764 |
|
| 2003 |
Anand S, Wang WC, Powell DR, Bolanowski SA, Zhang J, Ledje C, Pawashe AB, Amemiya CT, Shashikant CS. Divergence of Hoxc8 early enhancer parallels diverged axial morphologies between mammals and fishes. Proceedings of the National Academy of Sciences of the United States of America. 100: 15666-9. PMID 14673077 DOI: 10.1073/pnas.2535667100 |
0.633 |
|
| 2003 |
Wagner GP, Amemiya C, Ruddle F. Hox cluster duplications and the opportunity for evolutionary novelties. Proceedings of the National Academy of Sciences of the United States of America. 100: 14603-6. PMID 14638945 DOI: 10.1073/pnas.2536656100 |
0.578 |
|
| 2003 |
Kim CB, Shashikant CS, Sumiyama K, Wang WC, Amemiya CT, Ruddle FH. Phylogenetic analysis of the mammalian Hoxc8 non-coding region. Journal of Structural and Functional Genomics. 3: 195-9. PMID 12836698 DOI: 10.1023/A:1022635623260 |
0.612 |
|
| 2003 |
Ota T, Rast JP, Litman GW, Amemiya CT. Lineage-restricted retention of a primitive immunoglobulin heavy chain isotype within the Dipnoi reveals an evolutionary paradox. Proceedings of the National Academy of Sciences of the United States of America. 100: 2501-6. PMID 12606718 DOI: 10.1073/Pnas.0538029100 |
0.782 |
|
| 2003 |
Ota T, Nguyen TA, Huang E, Detrich HW, Amemiya CT. Positive Darwinian selection operating on the immunoglobulin heavy chain of Antarctic fishes. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 295: 45-58. PMID 12548542 DOI: 10.1002/jez.b.4 |
0.788 |
|
| 2002 |
Yoder JA, Nielsen ME, Amemiya CT, Litman GW. Zebrafish as an immunological model system. Microbes and Infection / Institut Pasteur. 4: 1469-78. PMID 12475637 DOI: 10.1016/S1286-4579(02)00029-1 |
0.798 |
|
| 2002 |
Martinez P, Amemiya CT. Genomics of the HOX gene cluster Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology. 133: 571-580. PMID 12470820 DOI: 10.1016/S1096-4959(02)00121-5 |
0.63 |
|
| 2002 |
Chiu CH, Amemiya C, Dewar K, Kim CB, Ruddle FH, Wagner GP. Molecular evolution of the HoxA cluster in the three major gnathostome lineages. Proceedings of the National Academy of Sciences of the United States of America. 99: 5492-7. PMID 11943847 DOI: 10.1073/Pnas.052709899 |
0.624 |
|
| 2002 |
Irvine SQ, Carr JL, Bailey WJ, Kawasaki K, Shimizu N, Amemiya CT, Ruddle FH. Genomic analysis of Hox clusters in the sea lamprey Petromyzon marinus. The Journal of Experimental Zoology. 294: 47-62. PMID 11932948 DOI: 10.1002/jez.10090 |
0.645 |
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