Hunter Bryan Fraser - Publications

2005 University of California, Berkeley, Berkeley, CA 

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Combs PA, Fraser HB. Spatially varying cis-regulatory divergence in Drosophila embryos elucidates cis-regulatory logic. Plos Genetics. 14: e1007631. PMID 30383747 DOI: 10.1371/Journal.Pgen.1007631  0.4
2018 Sharon E, Chen SA, Khosla NM, Smith JD, Pritchard JK, Fraser HB. Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing. Cell. PMID 30245013 DOI: 10.1016/J.Cell.2018.08.057  0.4
2016 Tehranchi AK, Myrthil M, Martin T, Hie BL, Golan D, Fraser HB. Pooled ChIP-Seq Links Variation in Transcription Factor Binding to Complex Disease Risk. Cell. PMID 27087447 DOI: 10.1016/J.Cell.2016.03.041  0.68
2015 Naranjo S, Smith JD, Artieri CG, Zhang M, Zhou Y, Palmer ME, Fraser HB. Dissecting the Genetic Basis of a Complex cis-Regulatory Adaptation. Plos Genetics. 11: e1005751. PMID 26713447 DOI: 10.1371/Journal.Pgen.1005751  0.68
2015 Kaplow IM, MacIsaac JL, Mah SM, McEwen LM, Kobor MS, Fraser HB. A pooling-based approach to mapping genetic variants associated with DNA methylation. Genome Research. 25: 907-17. PMID 25910490 DOI: 10.1101/Gr.183749.114  0.68
2015 Babak T, DeVeale B, Tsang EK, Zhou Y, Li X, Smith KS, Kukurba KR, Zhang R, Li JB, van der Kooy D, Montgomery SB, Fraser HB. Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse. Nature Genetics. 47: 544-9. PMID 25848752 DOI: 10.1038/Ng.3274  0.68
2015 Jiang R, Jones MJ, Chen E, Neumann SM, Fraser HB, Miller GE, Kobor MS. Discordance of DNA methylation variance between two accessible human tissues. Scientific Reports. 5: 8257. PMID 25660083 DOI: 10.1038/Srep08257  0.68
2014 Artieri CG, Fraser HB. Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation. Genome Research. 24: 2011-21. PMID 25294246 DOI: 10.1101/Gr.175893.114  0.68
2014 Artieri CG, Fraser HB. Transcript length mediates developmental timing of gene expression across Drosophila. Molecular Biology and Evolution. 31: 2879-89. PMID 25069653 DOI: 10.1093/Molbev/Msu226  0.68
2014 Artieri CG, Fraser HB. Evolution at two levels of gene expression in yeast. Genome Research. 24: 411-21. PMID 24318729 DOI: 10.1101/Gr.165522.113  0.68
2013 Fraser HB. Cell-cycle regulated transcription associates with DNA replication timing in yeast and human. Genome Biology. 14: R111. PMID 24098959 DOI: 10.1186/Gb-2013-14-10-R111  0.68
2013 Chang J, Zhou Y, Hu X, Lam L, Henry C, Green EM, Kita R, Kobor MS, Fraser HB. The molecular mechanism of a cis-regulatory adaptation in yeast. Plos Genetics. 9: e1003813. PMID 24068973 DOI: 10.1371/Journal.Pgen.1003813  0.68
2013 Smith JD, McManus KF, Fraser HB. A novel test for selection on cis-regulatory elements reveals positive and negative selection acting on mammalian transcriptional enhancers. Molecular Biology and Evolution. 30: 2509-18. PMID 23904330 DOI: 10.1093/Molbev/Mst134  0.68
2013 Irimia M, Maeso I, Roy SW, Fraser HB. Ancient cis-regulatory constraints and the evolution of genome architecture. Trends in Genetics : Tig. 29: 521-8. PMID 23791467 DOI: 10.1016/J.Tig.2013.05.008  0.68
2013 Lam LL, Emberly E, Fraser HB, Neumann SM, Chen E, Miller GE, Kobor MS. Reply to Suderman et al.: Importance of accounting for blood cell composition in epigenetic studies. Proceedings of the National Academy of Sciences of the United States of America. 110: E1247. PMID 23667927 DOI: 10.1073/Pnas.1222104110  0.68
2013 Fraser HB. Gene expression drives local adaptation in humans. Genome Research. 23: 1089-96. PMID 23539138 DOI: 10.1101/Gr.152710.112  0.68
2012 Ariza-Cosano A, Visel A, Pennacchio LA, Fraser HB, Gómez-Skarmeta JL, Irimia M, Bessa J. Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression. Bmc Genomics. 13: 713. PMID 23253453 DOI: 10.1186/1471-2164-13-713  0.68
2012 Lam LL, Emberly E, Fraser HB, Neumann SM, Chen E, Miller GE, Kobor MS. Factors underlying variable DNA methylation in a human community cohort. Proceedings of the National Academy of Sciences of the United States of America. 109: 17253-60. PMID 23045638 DOI: 10.1073/Pnas.1121249109  0.68
2012 Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints. Genome Research. 22: 2356-67. PMID 22722344 DOI: 10.1101/Gr.139725.112  0.68
2012 Fraser HB, Levy S, Chavan A, Shah HB, Perez JC, Zhou Y, Siegal ML, Sinha H. Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity. Genome Research. 22: 1930-9. PMID 22645260 DOI: 10.1101/Gr.134080.111  0.68
2012 Fraser HB, Lam LL, Neumann SM, Kobor MS. Population-specificity of human DNA methylation. Genome Biology. 13: R8. PMID 22322129 DOI: 10.1186/Gb-2012-13-2-R8  0.68
2011 Lamb JR, Zhang C, Xie T, Wang K, Zhang B, Hao K, Chudin E, Fraser HB, Millstein J, Ferguson M, Suver C, Ivanovska I, Scott M, Philippar U, Bansal D, et al. Predictive genes in adjacent normal tissue are preferentially altered by sCNV during tumorigenesis in liver cancer and may rate limiting. Plos One. 6: e20090. PMID 21750698 DOI: 10.1371/Journal.Pone.0020090  0.68
2011 Fraser HB. Genome-wide approaches to the study of adaptive gene expression evolution: systematic studies of evolutionary adaptations involving gene expression will allow many fundamental questions in evolutionary biology to be addressed. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 469-77. PMID 21538412 DOI: 10.1002/Bies.201000094  0.68
2011 Fraser HB, Babak T, Tsang J, Zhou Y, Zhang B, Mehrabian M, Schadt EE. Systematic detection of polygenic cis-regulatory evolution. Plos Genetics. 7: e1002023. PMID 21483757 DOI: 10.1371/Journal.Pgen.1002023  0.68
2010 Fraser HB, Moses AM, Schadt EE. Evidence for widespread adaptive evolution of gene expression in budding yeast. Proceedings of the National Academy of Sciences of the United States of America. 107: 2977-82. PMID 20133628 DOI: 10.1073/Pnas.0912245107  0.68
2010 Fraser HB, Schadt EE. The quantitative genetics of phenotypic robustness. Plos One. 5: e8635. PMID 20072615 DOI: 10.1371/Journal.Pone.0008635  0.68
2010 Fraser HB, Moses AM, Schadt EE. Reply to Jensen and Rando: Population size change does not account for widespread gene expression adaptation in yeast Proceedings of the National Academy of Sciences of the United States of America. 107: E111. DOI: 10.1073/Pnas.1006152107  0.68
2009 Yassour M, Kaplan T, Fraser HB, Levin JZ, Pfiffner J, Adiconis X, Schroth G, Luo S, Khrebtukova I, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 3264-9. PMID 19208812 DOI: 10.1073/Pnas.0812841106  0.68
2009 Fraser HB, Xie X. Common polymorphic transcript variation in human disease. Genome Research. 19: 567-75. PMID 19189928 DOI: 10.1101/Gr.083477.108  0.68
2007 Fraser HB, Plotkin JB. Using protein complexes to predict phenotypic effects of gene mutation. Genome Biology. 8: R252. PMID 18042286 DOI: 10.1186/Gb-2007-8-11-R252  0.68
2007 Bertin N, Simonis N, Dupuy D, Cusick ME, Han JD, Fraser HB, Roth FP, Vidal M. Confirmation of organized modularity in the yeast interactome. Plos Biology. 5: e153. PMID 17564493 DOI: 10.1371/Journal.Pbio.0050153  0.68
2007 Plotkin JB, Fraser HB. Assessing the determinants of evolutionary rates in the presence of noise. Molecular Biology and Evolution. 24: 1113-21. PMID 17347158 DOI: 10.1093/Molbev/Msm044  0.68
2006 Plotkin JB, Dushoff J, Desai MM, Fraser HB. Codon usage and selection on proteins. Journal of Molecular Evolution. 63: 635-53. PMID 17043750 DOI: 10.1007/S00239-005-0233-X  0.68
2006 Fraser HB. Coevolution, modularity and human disease. Current Opinion in Genetics & Development. 16: 637-44. PMID 17005391 DOI: 10.1016/J.Gde.2006.09.001  0.68
2006 Plotkin JB, Dushoff J, Desai MM, Fraser HB. Estimating selection pressures from limited comparative data. Molecular Biology and Evolution. 23: 1457-9. PMID 16754640 DOI: 10.1093/Molbev/Msl021  0.68
2005 Fraser HB, Khaitovich P, Plotkin JB, Pääbo S, Eisen MB. Aging and gene expression in the primate brain. Plos Biology. 3: e274. PMID 16048372 DOI: 10.1371/Journal.Pbio.0030274  0.68
2005 Lynch PJ, Fraser HB, Sevastopoulos E, Rine J, Rusche LN. Sum1p, the origin recognition complex, and the spreading of a promoter-specific repressor in Saccharomyces cerevisiae. Molecular and Cellular Biology. 25: 5920-32. PMID 15988008 DOI: 10.1128/Mcb.25.14.5920-5932.2005  0.68
2005 Wall DP, Hirsh AE, Fraser HB, Kumm J, Giaever G, Eisen MB, Feldman MW. Functional genomic analysis of the rates of protein evolution. Proceedings of the National Academy of Sciences of the United States of America. 102: 5483-8. PMID 15800036 DOI: 10.1073/Pnas.0501761102  0.68
2005 Fraser HB. Modularity and evolutionary constraint on proteins. Nature Genetics. 37: 351-2. PMID 15750592 DOI: 10.1038/Ng1530  0.68
2005 Hirsh AE, Fraser HB, Wall DP. Adjusting for selection on synonymous sites in estimates of evolutionary distance. Molecular Biology and Evolution. 22: 174-7. PMID 15371530 DOI: 10.1093/Molbev/Msh265  0.68
2004 Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M, Eisen MB. Conservation and evolution of cis-regulatory systems in ascomycete fungi. Plos Biology. 2: e398. PMID 15534694 DOI: 10.1371/Journal.Pbio.0020398  0.68
2004 Fraser HB, Hirsh AE, Wall DP, Eisen MB. Coevolution of gene expression among interacting proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 9033-8. PMID 15175431 DOI: 10.1073/Pnas.0402591101  0.68
2004 Fraser HB, Hirsh AE. Evolutionary rate depends on number of protein-protein interactions independently of gene expression level. Bmc Evolutionary Biology. 4: 13. PMID 15165289 DOI: 10.1186/1471-2148-4-13  0.68
2004 Fraser HB, Hirsh AE, Giaever G, Kumm J, Eisen MB. Noise minimization in eukaryotic gene expression. Plos Biology. 2: e137. PMID 15124029 DOI: 10.1371/Journal.Pbio.0020137  0.68
2004 Plotkin JB, Dushoff J, Fraser HB. Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum. Nature. 428: 942-5. PMID 15118727 DOI: 10.1038/Nature02458  0.68
2003 Wall DP, Fraser HB, Hirsh AE. Detecting putative orthologs. Bioinformatics (Oxford, England). 19: 1710-1. PMID 15593400 DOI: 10.1093/Bioinformatics/Btg213  0.68
2003 Fraser HB, Wall DP, Hirsh AE. A simple dependence between protein evolution rate and the number of protein-protein interactions. Bmc Evolutionary Biology. 3: 11. PMID 12769820 DOI: 10.1186/1471-2148-3-11  0.68
2003 Pál C, Papp B, Hurst LD, Hirsh AE, Fraser HB. Genomic function: Rate of evolution and gene dispensability Nature. 421: 496-498. PMID 12556881 DOI: 10.1038/421496B  0.68
2003 Hirsh AE, Fraser HB. Genomic function (communication arising): Rate of evolution and gene dispensability Nature. 421: 497-498. DOI: 10.1038/421497A  0.68
2002 Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW. Evolutionary rate in the protein interaction network. Science (New York, N.Y.). 296: 750-2. PMID 11976460 DOI: 10.1126/Science.1068696  0.68
2001 Weitz JS, Fraser HB. Explaining mortality rate plateaus. Proceedings of the National Academy of Sciences of the United States of America. 98: 15383-6. PMID 11752476 DOI: 10.1073/Pnas.261228098  0.68
2001 Snapper SB, Takeshima F, Antón I, Liu CH, Thomas SM, Nguyen D, Dudley D, Fraser H, Purich D, Lopez-Ilasaca M, Klein C, Davidson L, Bronson R, Mulligan RC, Southwick F, et al. N-WASP deficiency reveals distinct pathways for cell surface projections and microbial actin-based motility. Nature Cell Biology. 3: 897-904. PMID 11584271 DOI: 10.1038/Ncb1001-897  0.68
2001 Hirsh AE, Fraser HB. Protein dispensability and rate of evolution. Nature. 411: 1046-9. PMID 11429604 DOI: 10.1038/35082561  0.68
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