Year |
Citation |
Score |
2023 |
Lyons EF, Devanneaux LC, Muller RY, Freitas AV, Meacham ZA, McSharry MV, Trinh VN, Rogers AJ, Ingolia NT, Lareau LF. Codon optimality modulates protein output by tuning translation initiation. Biorxiv : the Preprint Server For Biology. PMID 38076849 DOI: 10.1101/2023.11.27.568910 |
0.486 |
|
2023 |
Ferguson L, Upton HE, Pimentel SC, Mok A, Lareau LF, Collins K, Ingolia NT. Streamlined and sensitive mono- and di-ribosome profiling in yeast and human cells. Nature Methods. 20: 1704-1715. PMID 37783882 DOI: 10.1038/s41592-023-02028-1 |
0.477 |
|
2023 |
Mok A, Tunney R, Benegas G, Wallace EWJ, Lareau LF. choros: correction of sequence-based biases for accurate quantification of ribosome profiling data. Biorxiv : the Preprint Server For Biology. PMID 36865295 DOI: 10.1101/2023.02.21.529452 |
0.737 |
|
2022 |
Buen Abad Najar CF, Burra P, Yosef N, Lareau LF. Identifying cell state-associated alternative splicing events and their coregulation. Genome Research. PMID 35858747 DOI: 10.1101/gr.276109.121 |
0.368 |
|
2020 |
Buen Abad Najar CF, Yosef N, Lareau LF. Coverage-dependent bias creates the appearance of binary splicing in single cells. Elife. 9. PMID 32597758 DOI: 10.7554/Elife.54603 |
0.42 |
|
2018 |
Tunney R, McGlincy NJ, Graham ME, Naddaf N, Pachter L, Lareau LF. Accurate design of translational output by a neural network model of ribosome distribution. Nature Structural & Molecular Biology. PMID 29967537 DOI: 10.1038/S41594-018-0080-2 |
0.709 |
|
2017 |
Rice ES, Kohno S, St John J, Pham S, Howard J, Lareau L, O'Connell BL, Hickey G, Armstrong J, Deran A, Fiddes I, Platt RN, Gresham C, McCarthy F, Kern C, et al. Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling. Genome Research. PMID 28137821 DOI: 10.1101/Gr.213595.116 |
0.531 |
|
2015 |
Lareau LF, Brenner SE. Regulation of splicing factors by alternative splicing and NMD is conserved between kingdoms yet evolutionarily flexible. Molecular Biology and Evolution. 32: 1072-9. PMID 25576366 DOI: 10.1093/Molbev/Msv002 |
0.694 |
|
2014 |
Lareau LF, Hite DH, Hogan GJ, Brown PO. Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments. Elife. 3: e01257. PMID 24842990 DOI: 10.7554/Elife.01257 |
0.723 |
|
2014 |
Lareau LF, Hite DH, Hogan GJ, Brown PO. Author response: Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments Elife. DOI: 10.7554/Elife.01257.015 |
0.686 |
|
2011 |
Ingolia NT, Lareau LF, Weissman JS. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell. 147: 789-802. PMID 22056041 DOI: 10.1016/J.Cell.2011.10.002 |
0.551 |
|
2009 |
Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE. Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. Plos Genetics. 5: e1000525. PMID 19543372 DOI: 10.1371/Journal.Pgen.1000525 |
0.77 |
|
2007 |
Lareau LF, Brooks AN, Soergel DA, Meng Q, Brenner SE. The coupling of alternative splicing and nonsense-mediated mRNA decay. Advances in Experimental Medicine and Biology. 623: 190-211. PMID 18380348 DOI: 10.1007/978-0-387-77374-2_12 |
0.727 |
|
2007 |
Lareau LF, Inada M, Green RE, Wengrod JC, Brenner SE. Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature. 446: 926-9. PMID 17361132 DOI: 10.1038/Nature05676 |
0.744 |
|
2005 |
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, ... ... Lareau LF, et al. The transcriptional landscape of the mammalian genome. Science (New York, N.Y.). 309: 1559-63. PMID 16141072 DOI: 10.1126/Science.1112014 |
0.701 |
|
2004 |
Lareau LF, Green RE, Bhatnagar RS, Brenner SE. The evolving roles of alternative splicing. Current Opinion in Structural Biology. 14: 273-82. PMID 15193306 DOI: 10.1016/J.Sbi.2004.05.002 |
0.752 |
|
2003 |
Green RE, Lewis BP, Hillman RT, Blanchette M, Lareau LF, Garnett AT, Rio DC, Brenner SE. Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes. Bioinformatics (Oxford, England). 19: i118-21. PMID 12855447 DOI: 10.1093/Bioinformatics/Btg1015 |
0.753 |
|
Low-probability matches (unlikely to be authored by this person) |
2022 |
Cope AL, Anderson F, Favate J, Jackson M, Mok A, Kurowska A, Liu J, MacKenzie E, Shivakumar V, Tilton P, Winterbourne SM, Xue S, Kavoussanakis K, Lareau LF, Shah P, et al. riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow. Bioinformatics (Oxford, England). PMID 35157051 DOI: 10.1093/bioinformatics/btac093 |
0.207 |
|
2021 |
Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, de León Derby MD, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, ... ... Lareau LF, et al. Accelerated RNA detection using tandem CRISPR nucleases. Medrxiv : the Preprint Server For Health Sciences. PMID 33791736 DOI: 10.1101/2021.03.19.21253328 |
0.195 |
|
2021 |
Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, Díaz de León Derby M, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, ... ... Lareau LF, et al. Accelerated RNA detection using tandem CRISPR nucleases. Nature Chemical Biology. PMID 34354262 DOI: 10.1038/s41589-021-00842-2 |
0.187 |
|
2021 |
Liu TY, Knott GJ, Smock DCJ, Desmarais JJ, Son S, Bhuiya A, Jakhanwal S, Prywes N, Agrawal S, Díaz de León Derby M, Switz NA, Armstrong M, Harris AR, Charles EJ, Thornton BW, ... ... Lareau LF, et al. Publisher Correction: Accelerated RNA detection using tandem CRISPR nucleases. Nature Chemical Biology. PMID 34616098 DOI: 10.1038/s41589-021-00882-8 |
0.174 |
|
2022 |
Chandrasekaran SS, Agrawal S, Fanton A, Jangid AR, Charrez B, Escajeda AM, Son S, Mcintosh R, Tran H, Bhuiya A, de León Derby MD, Switz NA, Armstrong M, Harris AR, Prywes N, ... ... Lareau LF, et al. Rapid detection of SARS-CoV-2 RNA in saliva via Cas13. Nature Biomedical Engineering. PMID 35953650 DOI: 10.1038/s41551-022-00917-y |
0.165 |
|
2020 |
Agrawal S, Fanton A, Chandrasekaran SS, Prywes N, Lukarska M, Biering SB, Smock DCJ, Mok A, Knott GJ, Van E, Dugan E, Kim S, Liu TY, Harris E, Stanley SA, ... Lareau LF, et al. Rapid detection of SARS-CoV-2 with Cas13. Medrxiv : the Preprint Server For Health Sciences. PMID 33354689 DOI: 10.1101/2020.12.14.20247874 |
0.136 |
|
2021 |
Deng X, Garcia-Knight MA, Khalid MM, Servellita V, Wang C, Morris MK, Sotomayor-González A, Glasner DR, Reyes KR, Gliwa AS, Reddy NP, Sanchez San Martin C, Federman S, Cheng J, Balcerek J, ... ... Lareau LF, et al. Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation. Medrxiv : the Preprint Server For Health Sciences. PMID 33758899 DOI: 10.1101/2021.03.07.21252647 |
0.134 |
|
2021 |
Deng X, Garcia-Knight MA, Khalid MM, Servellita V, Wang C, Morris MK, Sotomayor-González A, Glasner DR, Reyes KR, Gliwa AS, Reddy NP, Sanchez San Martin C, Federman S, Cheng J, Balcerek J, ... ... Lareau LF, et al. Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant. Cell. PMID 33991487 DOI: 10.1016/j.cell.2021.04.025 |
0.118 |
|
Hide low-probability matches. |