Ryan Kent Shultzaberger - Publications

Affiliations: 
2009 University of California, Berkeley, Berkeley, CA 

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Rubin BE, Wetmore KM, Price MN, Diamond S, Shultzaberger RK, Lowe LC, Curtin G, Arkin AP, Deutschbauer A, Golden SS. The essential gene set of a photosynthetic organism. Proceedings of the National Academy of Sciences of the United States of America. PMID 26508635 DOI: 10.1073/Pnas.1519220112  1
2015 Shultzaberger RK, Boyd JS, Diamond S, Greenspan RJ, Golden SS. Giving Time Purpose: The Synechococcus elongatus Clock in a Broader Network Context. Annual Review of Genetics. PMID 26442846 DOI: 10.1146/Annurev-Genet-111212-133227  1
2015 Shultzaberger RK, Paddock ML, Katsuki T, Greenspan RJ, Golden SS. High-throughput and quantitative approaches for measuring circadian rhythms in cyanobacteria using bioluminescence. Methods in Enzymology. 551: 53-72. PMID 25662451 DOI: 10.1016/Bs.Mie.2014.10.010  1
2014 Shultzaberger RK, Boyd JS, Katsuki T, Golden SS, Greenspan RJ. Single mutations in sasA enable a simpler ΔcikA gene network architecture with equivalent circadian properties. Proceedings of the National Academy of Sciences of the United States of America. 111: E5069-75. PMID 25385627 DOI: 10.1073/Pnas.1419902111  1
2014 Shultzaberger RK, Boyd JS, Katsuki T, Golden SS, Greenspan RJ. Single mutations in sas A enable a simpler δcikA gene network architecture with equivalent circadian properties Proceedings of the National Academy of Sciences of the United States of America. 111: E5069-E5075. DOI: 10.1073/pnas.1419902111d  1
2012 Shultzaberger RK, Maerkl SJ, Kirsch JF, Eisen MB. Probing the informational and regulatory plasticity of a transcription factor DNA-binding domain. Plos Genetics. 8: e1002614. PMID 22496663 DOI: 10.1371/Journal.Pgen.1002614  1
2011 Munchel SE, Shultzaberger RK, Takizawa N, Weis K. Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay. Molecular Biology of the Cell. 22: 2787-95. PMID 21680716 DOI: 10.1091/Mbc.E11-01-0028  1
2010 Shultzaberger RK, Malashock DS, Kirsch JF, Eisen MB. The fitness landscapes of cis-acting binding sites in different promoter and environmental contexts. Plos Genetics. 6: e1001042. PMID 20686658 DOI: 10.1371/Journal.Pgen.1001042  1
2007 Shultzaberger RK, Chiang DY, Moses AM, Eisen MB. Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis. Plos One. 2: e1199. PMID 18030333 DOI: 10.1371/Journal.Pone.0001199  1
2007 Chen Z, Lewis KA, Shultzaberger RK, Lyakhov IG, Zheng M, Doan B, Storz G, Schneider TD. Discovery of Fur binding site clusters in Escherichia coli by information theory models. Nucleic Acids Research. 35: 6762-77. PMID 17921503 DOI: 10.1093/Nar/Gkm631  1
2007 Shultzaberger RK, Roberts LR, Lyakhov IG, Sidorov IA, Stephen AG, Fisher RJ, Schneider TD. Correlation between binding rate constants and individual information of E. coli Fis binding sites. Nucleic Acids Research. 35: 5275-83. PMID 17617646 DOI: 10.1093/Nar/Gkm471  1
2007 Shultzaberger RK, Chen Z, Lewis KA, Schneider TD. Anatomy of Escherichia coli sigma70 promoters. Nucleic Acids Research. 35: 771-88. PMID 17189297 DOI: 10.1093/Nar/Gkl956  1
2006 Chiang DY, Nix DA, Shultzaberger RK, Gasch AP, Eisen MB. Flexible promoter architecture requirements for coactivator recruitment. Bmc Molecular Biology. 7: 16. PMID 16646957 DOI: 10.1186/1471-2199-7-16  1
2004 Corbett KD, Shultzaberger RK, Berger JM. The C-terminal domain of DNA gyrase A adopts a DNA-bending beta-pinwheel fold. Proceedings of the National Academy of Sciences of the United States of America. 101: 7293-8. PMID 15123801 DOI: 10.1073/Pnas.0401595101  1
2001 Shultzaberger RK, Bucheimer RE, Rudd KE, Schneider TD. Anatomy of Escherichia coli ribosome binding sites. Journal of Molecular Biology. 313: 215-28. PMID 11601857 DOI: 10.1006/Jmbi.2001.5040  1
1999 Shultzaberger RK, Schneider TD. Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepancies between natural selection and SELEX. Nucleic Acids Research. 27: 882-7. PMID 9889287 DOI: 10.1093/Nar/27.3.882  1
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