C Joel McManus, Ph.D. - Publications

2014- Biological Sciences Carnige Mellon, Pittsburgh, PA, United States 

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lin Y, May GE, Kready H, Nazzaro L, Mao M, Spealman P, Creeger Y, McManus CJ. Impacts of uORF codon identity and position on translation regulation. Nucleic Acids Research. PMID 31392980 DOI: 10.1093/nar/gkz681  0.32
2018 Coolon JD, McManus CJ, Stevenson KR, Graveley BR, Wittkopp PJ. Corrigendum: Tempo and mode of regulatory evolution in . Genome Research. 28: 1766. PMID 30385616 DOI: 10.1101/gr.244087.118  0.96
2015 Lin Y, May GE, Joel McManus C. Mod-seq: A High-Throughput Method for Probing RNA Secondary Structure. Methods in Enzymology. 558: 125-52. PMID 26068740 DOI: 10.1016/bs.mie.2015.01.012  0.96
2015 Coolon JD, Stevenson KR, McManus CJ, Yang B, Graveley BR, Wittkopp PJ. Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome. Molecular Biology and Evolution. PMID 26041937 DOI: 10.1093/molbev/msv135  0.48
2014 Lee H, McManus CJ, Cho DY, Eaton M, Renda F, Somma MP, Cherbas L, May G, Powell S, Zhang D, Zhan L, Resch A, Andrews J, Celniker SE, Cherbas P, et al. DNA copy number evolution in Drosophila cell lines. Genome Biology. 15: R70. PMID 25262759 DOI: 10.1186/gb-2014-15-8-r70  0.48
2014 Talkish J, May G, Lin Y, Woolford JL, McManus CJ. Mod-seq: high-throughput sequencing for chemical probing of RNA structure. Rna (New York, N.Y.). 20: 713-20. PMID 24664469 DOI: 10.1261/rna.042218.113  0.96
2014 Coolon JD, McManus CJ, Stevenson KR, Graveley BR, Wittkopp PJ. Tempo and mode of regulatory evolution in Drosophila. Genome Research. 24: 797-808. PMID 24567308 DOI: 10.1101/gr.163014.113  0.96
2014 McManus CJ, Coolon JD, Eipper-Mains J, Wittkopp PJ, Graveley BR. Evolution of splicing regulatory networks in Drosophila. Genome Research. 24: 786-96. PMID 24515119 DOI: 10.1101/gr.161521.113  0.96
2014 Rafiq K, Shashikant T, McManus CJ, Ettensohn CA. Genome-wide analysis of the skeletogenic gene regulatory network of sea urchins. Development (Cambridge, England). 141: 950-61. PMID 24496631 DOI: 10.1242/dev.105585  0.96
2014 McManus CJ, May GE, Spealman P, Shteyman A. Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast. Genome Research. 24: 422-30. PMID 24318730 DOI: 10.1101/gr.164996.113  0.96
2014 McManus CJ, Coolon JD, Duff MO, Eipper-Mains J, Graveley BR, Wittkopp PJ. Regulatory divergence in Drosophila revealed by mRNA-seq (Genome Research (2010) 20, (816-825)) Genome Research. 24: 1051.  0.96
2013 Dembowski JA, Ramesh M, McManus CJ, Woolford JL. Identification of the binding site of Rlp7 on assembling 60S ribosomal subunits in Saccharomyces cerevisiae. Rna (New York, N.Y.). 19: 1639-47. PMID 24129494 DOI: 10.1261/rna.041194.113  0.96
2013 Eipper-Mains JE, Kiraly DD, Duff MO, Horowitz MJ, McManus CJ, Eipper BA, Graveley BR, Mains RE. Effects of cocaine and withdrawal on the mouse nucleus accumbens transcriptome. Genes, Brain, and Behavior. 12: 21-33. PMID 23094851 DOI: 10.1111/j.1601-183X.2012.00873.x  0.96
2012 Coolon JD, Stevenson KR, McManus CJ, Graveley BR, Wittkopp PJ. Genomic imprinting absent in Drosophila melanogaster adult females. Cell Reports. 2: 69-75. PMID 22840398 DOI: 10.1016/j.celrep.2012.06.013  0.96
2011 McManus CJ, Graveley BR. RNA structure and the mechanisms of alternative splicing. Current Opinion in Genetics & Development. 21: 373-9. PMID 21530232 DOI: 10.1016/j.gde.2011.04.001  0.96
2011 May GE, Olson S, McManus CJ, Graveley BR. Competing RNA secondary structures are required for mutually exclusive splicing of the Dscam exon 6 cluster. Rna (New York, N.Y.). 17: 222-9. PMID 21159795 DOI: 10.1261/rna.2521311  0.96
2010 McManus CJ, Duff MO, Eipper-Mains J, Graveley BR. Global analysis of trans-splicing in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 107: 12975-9. PMID 20615941 DOI: 10.1073/pnas.1007586107  0.96
2010 McManus CJ, Coolon JD, Duff MO, Eipper-Mains J, Graveley BR, Wittkopp PJ. Regulatory divergence in Drosophila revealed by mRNA-seq. Genome Research. 20: 816-25. PMID 20354124 DOI: 10.1101/gr.102491.109  0.96
2008 McManus CJ, Graveley BR. Getting the message out. Molecular Cell. 31: 4-6. PMID 18614041 DOI: 10.1016/j.molcel.2008.06.010  0.96
2007 McManus CJ, Schwartz ML, Butcher SE, Brow DA. A dynamic bulge in the U6 RNA internal stem-loop functions in spliceosome assembly and activation. Rna (New York, N.Y.). 13: 2252-65. PMID 17925343 DOI: 10.1261/rna.699907  0.96
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