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Craig Nelson, Ph.D. - Publications

Affiliations: 
Molecular & Cell Biology University of Connecticut, Storrs, CT, United States 
Area:
Computational Biology, Embryonic Stem Cell Development,Genomics, Vertebrates
Website:
http://flora.mcb.uconn.edu/htmlbu/
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Cao L, Kuratnik A, Xu W, Gibson JD, Kolling F, Falcone ER, Ammar M, Van Heyst MD, Wright DL, Nelson CE, Giardina C. Development of intestinal organoids as tissue surrogates: cell composition and the epigenetic control of differentiation. Molecular Carcinogenesis. 54: 189-202. PMID 24115167 DOI: 10.1002/mc.22089  0.56
2014 Hemphill E, Lindsay J, Lee C, M?ndoiu II, Nelson CE. Feature selection and classifier performance on diverse bio- logical datasets. Bmc Bioinformatics. 15: S4. PMID 25434802 DOI: 10.1186/1471-2105-15-S13-S4  0.56
2014 Dharia AP, Obla A, Gajdosik MD, Simon A, Nelson CE. Tempo and mode of gene duplication in mammalian ribosomal protein evolution. Plos One. 9: e111721. PMID 25369106 DOI: 10.1371/journal.pone.0111721  0.44
2014 Chung KM, Kolling FW, Gajdosik MD, Burger S, Russell AC, Nelson CE. Single cell analysis reveals the stochastic phase of reprogramming to pluripotency is an ordered probabilistic process. Plos One. 9: e95304. PMID 24743916 DOI: 10.1371/journal.pone.0095304  0.56
2013 Fahrion JK, Komuro Y, Ohno N, Littner Y, Nelson C, Kumada T, Lamb B, Komuro H. Cerebellar Patterning Patterning and Cell Type Specification in the Developing Cns and Pns. 211-225. DOI: 10.1016/B978-0-12-397265-1.00042-3  0.56
2011 Jha S, Patil SM, Gibson J, Nelson CE, Alder NN, Alexandrescu AT. Mechanism of amylin fibrillization enhancement by heparin. The Journal of Biological Chemistry. 286: 22894-904. PMID 21555785 DOI: 10.1074/jbc.M110.215814  0.56
2011 Lee C, M?ndoiu II, Nelson CE. Inferring ethnicity from mitochondrial DNA sequence. Bmc Proceedings. 5: S11. PMID 21554759 DOI: 10.1186/1753-6561-5-S2-S11  0.56
2011 Hemphill EE, Dharia AP, Lee C, Jakuba CM, Gibson JD, Kolling FW, Nelson CE. SCLD: a Stem Cell Lineage Database for the annotation of cell types and developmental lineages. Nucleic Acids Research. 39: D525-33. PMID 20972216 DOI: 10.1093/nar/gkq941  0.56
2011 Cao L, Gibson JD, Miyamoto S, Sail V, Verma R, Rosenberg DW, Nelson CE, Giardina C. Intestinal lineage commitment of embryonic stem cells. Differentiation; Research in Biological Diversity. 81: 1-10. PMID 20934799 DOI: 10.1016/j.diff.2010.09.182  0.56
2009 Jun J, Mandoiu II, Nelson CE. Identification of mammalian orthologs using local synteny. Bmc Genomics. 10: 630. PMID 20030836 DOI: 10.1186/1471-2164-10-630  0.56
2009 Gibson JD, Jakuba CM, Boucher N, Holbrook KA, Carter MG, Nelson CE. Single-cell transcript analysis of human embryonic stem cells. Integrative Biology : Quantitative Biosciences From Nano to Macro. 1: 540-51. PMID 20023769 DOI: 10.1039/b908276j  0.56
2009 Jun J, Ryvkin P, Hemphill E, Mandoiu I, Nelson C. The birth of new genes by RNA- and DNA-mediated duplication during mammalian evolution. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1429-44. PMID 19803737 DOI: 10.1089/cmb.2009.0073  0.56
2009 Jun J, Ryvkin P, Hemphill E, Nelson C. Duplication mechanism and disruptions in flanking regions determine the fate of Mammalian gene duplicates. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1253-66. PMID 19772436 DOI: 10.1089/cmb.2009.0074  0.56
2009 Nelson C, Vialette S. RECOMB-Comparative Genomics Special Issue. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1285-6. PMID 19754275 DOI: 10.1089/cmb.2009.002P  0.56
2009 Barry ER, Krueger W, Jakuba CM, Veilleux E, Ambrosi DJ, Nelson CE, Rasmussen TP. ES cell cycle progression and differentiation require the action of the histone methyltransferase Dot1L. Stem Cells (Dayton, Ohio). 27: 1538-47. PMID 19544450 DOI: 10.1002/stem.86  0.56
2009 Pacik PT, Nelson CE. Contralateral pain reduction in augmentation mammaplasty using pain control catheters and controls. Plastic and Reconstructive Surgery. 123: 1130; author reply 1. PMID 19319094 DOI: 10.1097/PRS.0b013e31819a33e2  0.56
2009 Duitama J, Kumar DM, Hemphill E, Khan M, Mandoiu II, Nelson CE. PrimerHunter: a primer design tool for PCR-based virus subtype identification. Nucleic Acids Research. 37: 2483-92. PMID 19264805 DOI: 10.1093/nar/gkp073  0.56
2008 Pacik PT, Nelson CE, Werner C. Pain control in augmentation mammaplasty using indwelling catheters in 687 consecutive patients: data analysis. Aesthetic Surgery Journal / the American Society For Aesthetic Plastic Surgery. 28: 631-41. PMID 19083591 DOI: 10.1016/j.asj.2008.09.001  0.56
2008 Pacik PT, Nelson CE, Werner C. Pain control in augmentation mammaplasty: safety and efficacy of indwelling catheters in 644 consecutive patients. Aesthetic Surgery Journal / the American Society For Aesthetic Plastic Surgery. 28: 279-84. PMID 19083538 DOI: 10.1016/j.asj.2008.02.001  0.56
2008 Spurling CC, Suhl JA, Boucher N, Nelson CE, Rosenberg DW, Giardina C. The short chain fatty acid butyrate induces promoter demethylation and reactivation of RARbeta2 in colon cancer cells. Nutrition and Cancer. 60: 692-702. PMID 18791934 DOI: 10.1080/01635580802008278  0.56
2008 Jun J, Ryvkin P, Hemphill E, Mǎndoiu I, Nelson C. Estimating the relative contributions of new genes from retrotransposition and segmental duplication events during mammalian evolution Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 40-54. DOI: 10.1007/978-3-540-87989-3_4  0.56
2008 Ryvkin P, Jun J, Hemphill E, Nelson C. Duplication mechanism and disruptions in flanking regions influence the fate of mammalian gene duplicates Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 26-39. DOI: 10.1007/978-3-540-87989-3_3  0.56
2008 Nelson CE, Vialette S. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: V-VI.  0.56
2007 Hersh BM, Nelson CE, Stoll SJ, Norton JE, Albert TJ, Carroll SB. The UBX-regulated network in the haltere imaginal disc of D. melanogaster. Developmental Biology. 302: 717-27. PMID 17174297 DOI: 10.1016/j.ydbio.2006.11.011  0.68
2004 Nelson CE, Hersh BM, Carroll SB. The regulatory content of intergenic DNA shapes genome architecture. Genome Biology. 5: R25. PMID 15059258 DOI: 10.1186/gb-2004-5-4-r25  0.68
2001 Guss KA, Nelson CE, Hudson A, Kraus ME, Carroll SB. Control of a genetic regulatory network by a selector gene. Science (New York, N.Y.). 292: 1164-7. PMID 11303087 DOI: 10.1126/science.1058312  0.56
1996 Marigo V, Laufer E, Nelson CE, Riddle RD, Johnson RL, Tabin C. Sonic hedgehog regulates patterning in early embryos. Biochemical Society Symposium. 62: 51-60. PMID 8971339  0.56
1996 Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development (Cambridge, England). 122: 1449-66. PMID 8625833  0.56
1995 Nelson CE, Tabin C. Footnote on limb evolution. Nature. 375: 630-1. PMID 7791891 DOI: 10.1038/375630a0  0.56
1995 Burke AC, Nelson CE, Morgan BA, Tabin C. Hox genes and the evolution of vertebrate axial morphology. Development (Cambridge, England). 121: 333-46. PMID 7768176  0.56
1995 Simon HG, Nelson C, Goff D, Laufer E, Morgan BA, Tabin C. Differential expression of myogenic regulatory genes and Msx-1 during dedifferentiation and redifferentiation of regenerating amphibian limbs Developmental Dynamics. 202: 1-12. PMID 7703517 DOI: 10.1002/aja.1002020102  0.56
1995 Roberts DJ, Johnson RL, Burke AC, Nelson CE, Morgan BA, Tabin C. Sonic hedgehog is an endodermal signal inducing Bmp-4 and Hox genes during induction and regionalization of the chick hindgut. Development (Cambridge, England). 121: 3163-74. PMID 7588051  0.56
1995 Riddle RD, Ensini M, Nelson C, Tsuchida T, Jessell TM, Tabin C. Induction of the LIM homeobox gene Lmx1 by WNT7a establishes dorsoventral pattern in the vertebrate limb. Cell. 83: 631-40. PMID 7585966 DOI: 10.1016/0092-8674(95)90103-5  0.56
1994 Laufer E, Nelson CE, Johnson RL, Morgan BA, Tabin C. Sonic hedgehog and Fgf-4 act through a signaling cascade and feedback loop to integrate growth and patterning of the developing limb bud. Cell. 79: 993-1003. PMID 8001146 DOI: 10.1016/0092-8674(94)90030-2  0.56
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