Rupali P. Patwardhan, Ph.D.
Affiliations: | University of Washington, Seattle, Seattle, WA |
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"Rupali Patwardhan"Parents
Sign in to add mentor| Jay Shendure | grad student | 2007-2012 | University of Washington | |
| (Massively parallel functional dissection of regulatory elements.) | ||||
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Publications
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| Soza VL, Lindsley D, Waalkes A, et al. (2019) The Rhododendron genome and chromosomal organization provide insight into shared whole genome duplications across the heath family (Ericaceae). Genome Biology and Evolution |
| Rosenberg AB, Patwardhan RP, Shendure J, et al. (2015) Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences. Cell. 163: 698-711 |
| Birnbaum RY, Patwardhan RP, Kim MJ, et al. (2014) Systematic dissection of coding exons at single nucleotide resolution supports an additional role in cell-specific transcriptional regulation. Plos Genetics. 10: e1004592 |
| Burton JN, Adey A, Patwardhan RP, et al. (2013) Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions Nature Biotechnology. 31: 1119-1125 |
| Smith RP, Taher L, Patwardhan RP, et al. (2013) Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model. Nature Genetics. 45: 1021-8 |
| Patwardhan RP, Hiatt JB, Witten DM, et al. (2012) Massively parallel functional dissection of mammalian enhancers in vivo. Nature Biotechnology. 30: 265-70 |
| Colbourne JK, Pfrender ME, Gilbert D, et al. (2011) The ecoresponsive genome of Daphnia pulex. Science (New York, N.Y.). 331: 555-61 |
| Kitzman JO, Mackenzie AP, Adey A, et al. (2011) Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nature Biotechnology. 29: 59-63 |
| Kitzman JO, MacKenzie AP, Adey A, et al. (2011) Erratum: Haplotype-resolved genome sequencing of a Gujarati Indian individual Nature Biotechnology. 29: 459-459 |
| Hiatt JB, Patwardhan RP, Turner EH, et al. (2010) Parallel, tag-directed assembly of locally derived short sequence reads Nature Methods. 7: 119-122 |