Soumya Raychaudhuri, Ph.D. - Publications

Affiliations: 
Stanford University, Palo Alto, CA 

199 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Luo Y, Suliman S, Asgari S, Amariuta T, Baglaenko Y, Martínez-Bonet M, Ishigaki K, Gutierrez-Arcelus M, Calderon R, Lecca L, León SR, Jimenez J, Yataco R, Contreras C, Galea JT, ... ... Raychaudhuri S, et al. Early progression to active tuberculosis is a highly heritable trait driven by 3q23 in Peruvians. Nature Communications. 10: 3765. PMID 31434886 DOI: 10.1038/s41467-019-11664-1  0.56
2019 Nathan A, Baglaenko Y, Fonseka CY, Beynor JI, Raychaudhuri S. Multimodal single-cell approaches shed light on T cell heterogeneity. Current Opinion in Immunology. 61: 17-25. PMID 31430664 DOI: 10.1016/j.coi.2019.07.002  0.56
2019 Arazi A, Rao DA, Berthier CC, Davidson A, Liu Y, Hoover PJ, Chicoine A, Eisenhaure TM, Jonsson AH, Li S, Lieb DJ, Zhang F, Slowikowski K, Browne EP, Noma A, ... ... Raychaudhuri S, et al. Publisher Correction: The immune cell landscape in kidneys of patients with lupus nephritis. Nature Immunology. PMID 31409923 DOI: 10.1038/s41590-019-0473-3  0.76
2019 Pouget JG, Han B, Wu Y, Mignot E, Ollila HM, Barker J, Spain S, Dand N, Trembath R, Martin J, Mayes MD, Bossini-Castillo L, López-Isac E, Jin Y, ... ... Raychaudhuri S, et al. Cross-disorder analysis of schizophrenia and 19 immune-mediated diseases identifies shared genetic risk. Human Molecular Genetics. PMID 31211845 DOI: 10.1093/hmg/ddz145  0.4
2019 Arazi A, Rao DA, Berthier CC, Davidson A, Liu Y, Hoover PJ, Chicoine A, Eisenhaure TM, Jonsson AH, Li S, Lieb DJ, Zhang F, Slowikowski K, Browne EP, Noma A, ... ... Raychaudhuri S, et al. The immune cell landscape in kidneys of patients with lupus nephritis. Nature Immunology. PMID 31209404 DOI: 10.1038/s41590-019-0398-x  0.76
2019 Croft AP, Campos J, Jansen K, Turner JD, Marshall J, Attar M, Savary L, Wehmeyer C, Naylor AJ, Kemble S, Begum J, Dürholz K, Perlman H, Barone F, McGettrick HM, ... ... Raychaudhuri S, et al. Distinct fibroblast subsets drive inflammation and damage in arthritis. Nature. PMID 31142839 DOI: 10.1038/s41586-019-1263-7  0.56
2019 Der E, Suryawanshi H, Morozov P, Kustagi M, Goilav B, Ranabathou S, Izmirly P, Clancy R, Belmont HM, Koenigsberg M, Mokrzycki M, Rominieki H, Graham JA, Rocca JP, Bornkamp N, ... ... Raychaudhuri S, et al. Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways. Nature Immunology. PMID 31110316 DOI: 10.1038/s41590-019-0386-1  0.76
2019 Kuo D, Ding J, Cohn IS, Zhang F, Wei K, Rao DA, Rozo C, Sokhi UK, Shanaj S, Oliver DJ, Echeverria AP, DiCarlo EF, Brenner MB, Bykerk VP, Goodman SM, ... Raychaudhuri S, et al. HBEGF macrophages in rheumatoid arthritis induce fibroblast invasiveness. Science Translational Medicine. 11. PMID 31068444 DOI: 10.1126/scitranslmed.aau8587  0.56
2019 Zhang F, Wei K, Slowikowski K, Fonseka CY, Rao DA, Kelly S, Goodman SM, Tabechian D, Hughes LB, Salomon-Escoto K, Watts GFM, Jonsson AH, Rangel-Moreno J, Meednu N, Rozo C, ... ... Raychaudhuri S, et al. Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry. Nature Immunology. PMID 31061532 DOI: 10.1038/s41590-019-0378-1  0.76
2019 Kim SS, Dai C, Hormozdiari F, van de Geijn B, Gazal S, Park Y, O'Connor L, Amariuta T, Loh PR, Finucane H, Raychaudhuri S, Price AL. Genes with High Network Connectivity Are Enriched for Disease Heritability. American Journal of Human Genetics. 104: 896-913. PMID 31051114 DOI: 10.1016/j.ajhg.2019.03.020  0.52
2019 Spiliopoulou A, Colombo M, Plant D, Nair N, Cui J, Coenen MJ, Ikari K, Yamanaka H, Saevarsdottir S, Padyukov L, Bridges SL, Kimberly RP, Okada Y, van Riel PLC, Wolbink G, ... ... Raychaudhuri S, et al. Association of response to TNF inhibitors in rheumatoid arthritis with quantitative trait loci for and CD39. Annals of the Rheumatic Diseases. PMID 31036624 DOI: 10.1136/annrheumdis-2018-214877  0.32
2019 Amariuta T, Luo Y, Gazal S, Davenport EE, van de Geijn B, Ishigaki K, Westra HJ, Teslovich N, Okada Y, Yamamoto K, Price AL, Raychaudhuri S. IMPACT: Genomic Annotation of Cell-State-Specific Regulatory Elements Inferred from the Epigenome of Bound Transcription Factors. American Journal of Human Genetics. PMID 31006511 DOI: 10.1016/j.ajhg.2019.03.012  0.52
2019 Gutierrez-Arcelus M, Teslovich N, Mola AR, Polidoro RB, Nathan A, Kim H, Hannes S, Slowikowski K, Watts GFM, Korsunsky I, Brenner MB, Raychaudhuri S, Brennan PJ. Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions. Nature Communications. 10: 687. PMID 30737409 DOI: 10.1038/s41467-019-08604-4  0.76
2018 Davenport EE, Amariuta T, Gutierrez-Arcelus M, Slowikowski K, Westra HJ, Luo Y, Shen C, Rao DA, Zhang Y, Pearson S, von Schack D, Beebe JS, Bing N, John S, Vincent MS, ... ... Raychaudhuri S, et al. Discovering in vivo cytokine-eQTL interactions from a lupus clinical trial. Genome Biology. 19: 168. PMID 30340504 DOI: 10.1186/s13059-018-1560-8  0.76
2018 Fonseka CY, Rao DA, Teslovich NC, Korsunsky I, Hannes SK, Slowikowski K, Gurish MF, Donlin LT, Lederer JA, Weinblatt ME, Massarotti EM, Coblyn JS, Helfgott SM, Todd DJ, Bykerk VP, ... ... Raychaudhuri S, et al. Mixed-effects association of single cells identifies an expanded effector CD4 T cell subset in rheumatoid arthritis. Science Translational Medicine. 10. PMID 30333237 DOI: 10.1126/scitranslmed.aaq0305  0.76
2018 Westra HJ, Martínez-Bonet M, Onengut-Gumuscu S, Lee A, Luo Y, Teslovich N, Worthington J, Martin J, Huizinga T, Klareskog L, Rantapaa-Dahlqvist S, Chen WM, Quinlan A, Todd JA, Eyre S, ... ... Raychaudhuri S, et al. Fine-mapping and functional studies highlight potential causal variants for rheumatoid arthritis and type 1 diabetes. Nature Genetics. PMID 30224649 DOI: 10.1038/s41588-018-0216-7  0.52
2018 Li G, Martínez-Bonet M, Wu D, Yang Y, Cui J, Nguyen HN, Cunin P, Levescot A, Bai M, Westra HJ, Okada Y, Brenner MB, Raychaudhuri S, Hendrickson EA, Maas RL, et al. High-throughput identification of noncoding functional SNPs via type IIS enzyme restriction. Nature Genetics. PMID 30013183 DOI: 10.1038/s41588-018-0159-z  0.52
2018 Donlin LT, Rao DA, Wei K, Slowikowski K, McGeachy MJ, Turner JD, Meednu N, Mizoguchi F, Gutierrez-Arcelus M, Lieb DJ, Keegan J, Muskat K, Hillman J, Rozo C, Ricker E, ... ... Raychaudhuri S, et al. Methods for high-dimensonal analysis of cells dissociated from cyropreserved synovial tissue. Arthritis Research & Therapy. 20: 139. PMID 29996944 DOI: 10.1186/s13075-018-1631-y  0.76
2018 Finucane HK, Reshef YA, Anttila V, Slowikowski K, Gusev A, Byrnes A, Gazal S, Loh PR, Lareau C, Shoresh N, Genovese G, Saunders A, Macosko E, Pollack S, ... ... Raychaudhuri S, et al. Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types. Nature Genetics. 50: 621-629. PMID 29632380 DOI: 10.1038/s41588-018-0081-4  0.76
2017 Terao C, Okada Y, Ikari K, Kochi Y, Suzuki A, Ohmura K, Matsuo K, Taniguchi A, Kubo M, Raychaudhuri S, Yamamoto K, Yamanaka H, Kamatani Y, Mimori T, Matsuda F. Genetic landscape of interactive effects of HLA-DRB1 alleles on susceptibility to ACPA(+) rheumatoid arthritis and ACPA levels in Japanese population. Journal of Medical Genetics. PMID 29025870 DOI: 10.1136/jmedgenet-2017-104779  0.52
2017 Slowikowski K, Wei K, Brenner MB, Raychaudhuri S. Functional genomics of stromal cells in chronic inflammatory diseases. Current Opinion in Rheumatology. PMID 28984647 DOI: 10.1097/BOR.0000000000000455  0.76
2017 Fonseka CY, Rao DA, Raychaudhuri S. Leveraging blood and tissue CD4+ T cell heterogeneity at the single cell level to identify mechanisms of disease in rheumatoid arthritis. Current Opinion in Immunology. 49: 27-36. PMID 28888129 DOI: 10.1016/j.coi.2017.08.005  0.56
2017 Aung T, Ozaki M, Lee MC, Schlötzer-Schrehardt U, Thorleifsson G, Mizoguchi T, Igo RP, Haripriya A, Williams SE, Astakhov YS, Orr AC, Burdon KP, Nakano S, Mori K, Abu-Amero K, ... ... Raychaudhuri S, et al. Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci. Nature Genetics. PMID 28553957 DOI: 10.1038/ng.3875  0.36
2017 Sparks JA, Barbhaiya M, Karlson EW, Ritter SY, Raychaudhuri S, Corrigan CC, Lu F, Selhub J, Chasman DI, Paynter NP, Ridker PM, Solomon DH. Investigating methotrexate toxicity within a randomized double-blinded, placebo-controlled trial: Rationale and design of the Cardiovascular Inflammation Reduction Trial-Adverse Events (CIRT-AE) Study. Seminars in Arthritis and Rheumatism. PMID 28284844 DOI: 10.1016/j.semarthrit.2017.02.003  0.32
2017 Rao DA, Gurish MF, Marshall JL, Slowikowski K, Fonseka CY, Liu Y, Donlin LT, Henderson LA, Wei K, Mizoguchi F, Teslovich NC, Weinblatt ME, Massarotti EM, Coblyn JS, Helfgott SM, ... ... Raychaudhuri S, et al. Pathologically expanded peripheral T helper cell subset drives B cells in rheumatoid arthritis. Nature. 542: 110-114. PMID 28150777 DOI: 10.1038/nature20810  0.76
2016 Cui J, Diogo D, Stahl EA, Canhao H, Mariette X, Greenberg JD, Okada Y, Pappas DA, Fulton RS, Tak PP, Nurmohamed MT, Lee A, Larson DE, Kurreeman F, Deluca TL, ... ... Raychaudhuri S, et al. The role of rare protein-coding variants to anti-TNF treatment response in rheumatoid arthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 27788309 DOI: 10.1002/art.39966  0.32
2016 Okada Y, Suzuki A, Ikari K, Terao C, Kochi Y, Ohmura K, Higasa K, Akiyama M, Ashikawa K, Kanai M, Hirata J, Suita N, Teo YY, Xu H, Bae SC, ... ... Raychaudhuri S, et al. Contribution of a Non-classical HLA Gene, HLA-DOA, to the Risk of Rheumatoid Arthritis. American Journal of Human Genetics. 99: 366-374. PMID 27486778 DOI: 10.1016/j.ajhg.2016.06.019  0.52
2016 Li Z, Xia Y, Feng LN, Chen JR, Li HM, Cui J, Cai QQ, Sim KS, Nairismägi ML, Laurensia Y, Meah WY, Liu WS, Guo YM, Chen LZ, Feng QS, ... ... Raychaudhuri S, et al. Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study. The Lancet. Oncology. PMID 27470079 DOI: 10.1016/S1470-2045(16)30148-6  0.36
2016 Prins BP, Abbasi A, Wong A, Vaez A, Nolte I, Franceschini N, Stuart PE, Guterriez Achury J, Mistry V, Bradfield JP, Valdes AM, Bras J, Shatunov A, ... ... Raychaudhuri S, et al. Investigating the Causal Relationship of C-Reactive Protein with 32 Complex Somatic and Psychiatric Outcomes: A Large-Scale Cross-Consortium Mendelian Randomization Study. Plos Medicine. 13: e1001976. PMID 27327646 DOI: 10.1371/journal.pmed.1001976  0.4
2016 Han B, Pouget JG, Slowikowski K, Stahl E, Lee CH, Diogo D, Hu X, Park YR, Kim E, Gregersen PK, Dahlqvist SR, Worthington J, Martin J, Eyre S, Klareskog L, ... ... Raychaudhuri S, et al. A method to decipher pleiotropy by detecting underlying heterogeneity driven by hidden subgroups applied to autoimmune and neuropsychiatric diseases. Nature Genetics. PMID 27182969 DOI: 10.1038/ng.3572  0.4
2016 Ellinghaus D, Jostins L, Spain SL, Cortes A, Bethune J, Han B, Park YR, Raychaudhuri S, Pouget JG, Hübenthal M, Folseraas T, Wang Y, Esko T, Metspalu A, Westra HJ, et al. Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci. Nature Genetics. PMID 26974007 DOI: 10.1038/ng.3528  0.4
2016 Han B, Duong D, Sul JH, de Bakker PI, Eskin E, Raychaudhuri S. A general framework for meta-analyzing dependent studies with overlapping subjects in association mapping. Human Molecular Genetics. PMID 26908615 DOI: 10.1093/hmg/ddw049  0.4
2016 Kundu-Raychaudhuri S, Abria C, Raychaudhuri SP. IL-9, a local growth factor for synovial T cells in inflammatory arthritis Cytokine. 79: 45-51. DOI: 10.1016/j.cyto.2015.12.020  0.32
2016 Saxena A, Raychaudhuri SK, Raychaudhuri SP. Cytokine pathways in psoriasis and psoriatic arthritis Psoriatic Arthritis and Psoriasis: Pathology and Clinical Aspects. 73-82. DOI: 10.1007/978-3-319-19530-8_9  0.32
2016 Raychaudhuri SK, Wulff H, Raychaudhuri SP. KCa3.1-/- Mice Do Not Develop CIA: Regulatory Role for KCa3.1 in Autoimmune Arthritis Journal of Cellular Physiology. DOI: 10.1002/jcp.25356  0.32
2015 Ombrello MJ, Remmers EF, Tachmazidou I, Grom A, Foell D, Haas JP, Martini A, Gattorno M, Özen S, Prahalad S, Zeft AS, Bohnsack JF, Mellins ED, Ilowite NT, Russo R, ... ... Raychaudhuri S, et al. HLA-DRB1*11 and variants of the MHC class II locus are strong risk factors for systemic juvenile idiopathic arthritis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598658 DOI: 10.1073/pnas.1520779112  0.88
2015 McLaren PJ, Coulonges C, Bartha I, Lenz TL, Deutsch AJ, Bashirova A, Buchbinder S, Carrington MN, Cossarizza A, Dalmau J, De Luca A, Goedert JJ, Gurdasani D, Haas DW, Herbeck JT, ... ... Raychaudhuri S, et al. Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load. Proceedings of the National Academy of Sciences of the United States of America. PMID 26553974 DOI: 10.1073/pnas.1514867112  0.88
2015 Gutierrez-Achury J, Zorro MM, Ricaño-Ponce I, Zhernakova DV, Diogo D, Raychaudhuri S, Franke L, Trynka G, Wijmenga C, Zhernakova A. Functional implications of disease-specific variants in loci jointly associated to coeliac disease and rheumatoid arthritis. Human Molecular Genetics. PMID 26546613 DOI: 10.1093/hmg/ddv455  0.72
2015 Won HH, Natarajan P, Dobbyn A, Jordan DM, Roussos P, Lage K, Raychaudhuri S, Stahl E, Do R. Disproportionate Contributions of Select Genomic Compartments and Cell Types to Genetic Risk for Coronary Artery Disease. Plos Genetics. 11: e1005622. PMID 26509271 DOI: 10.1371/journal.pgen.1005622  0.88
2015 Triebwasser MP, Roberson ED, Yu Y, Schramm EC, Wagner EK, Raychaudhuri S, Seddon JM, Atkinson JP. Rare Variants in the Functional Domains of Complement Factor H Are Associated With Age-Related Macular Degeneration. Investigative Ophthalmology & Visual Science. 56: 6873-8. PMID 26501415 DOI: 10.1167/iovs.15-17432  0.88
2015 Hayes JE, Trynka G, Vijai J, Offit K, Raychaudhuri S, Klein RJ. Tissue-Specific Enrichment of Lymphoma Risk Loci in Regulatory Elements. Plos One. 10: e0139360. PMID 26422229 DOI: 10.1371/journal.pone.0139360  0.88
2015 Finucane HK, Bulik-Sullivan B, Gusev A, Trynka G, Reshef Y, Loh PR, Anttila V, Xu H, Zang C, Farh K, Ripke S, Day FR, ... ... Raychaudhuri S, et al. Partitioning heritability by functional annotation using genome-wide association summary statistics. Nature Genetics. PMID 26414678 DOI: 10.1038/ng.3404  0.72
2015 Yarwood A, Viatte S, Okada Y, Plenge R, Yamamoto K, Barton A, Symmons D, Raychaudhuri S, Klareskog L, Gregersen P, Worthington J, Eyre S. Loci associated with N-glycosylation of human IgG are not associated with rheumatoid arthritis: a Mendelian randomisation study. Annals of the Rheumatic Diseases. PMID 26386125 DOI: 10.1136/annrheumdis-2014-207210  0.88
2015 Lee SH, Byrne EM, Hultman CM, Kähler A, Vinkhuyzen AA, Ripke S, Andreassen OA, Frisell T, Gusev A, Hu X, Karlsson R, Mantzioris VX, McGrath JJ, Mehta D, Stahl EA, ... ... Raychaudhuri S, et al. New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritis. International Journal of Epidemiology. PMID 26286434 DOI: 10.1093/ije/dyv136  0.88
2015 Lenz TL, Deutsch AJ, Han B, Hu X, Okada Y, Eyre S, Knapp M, Zhernakova A, Huizinga TW, Abecasis G, Becker J, Boeckxstaens GE, Chen WM, Franke A, Gladman DD, ... ... Raychaudhuri S, et al. Widespread non-additive and interaction effects within HLA loci modulate the risk of autoimmune diseases. Nature Genetics. PMID 26258845 DOI: 10.1038/ng.3379  0.4
2015 Terao C, Yamakawa N, Yano K, Markusse IM, Ikari K, Yoshida S, Furu M, Hashimoto M, Ito H, Fujii T, Ohmura K, Murakami K, Takahashi M, Hamaguchi M, Tabara Y, ... ... Raychaudhuri S, et al. Rheumatoid factor is associated with the distribution of hand joint destruction in rheumatoid arthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 26245322 DOI: 10.1002/art.39306  0.88
2015 Hu X, Deutsch AJ, Lenz TL, Onengut-Gumuscu S, Han B, Chen WM, Howson JM, Todd JA, de Bakker PI, Rich SS, Raychaudhuri S. Additive and interaction effects at three amino acid positions in HLA-DQ and HLA-DR molecules drive type 1 diabetes risk. Nature Genetics. 47: 898-905. PMID 26168013 DOI: 10.1038/ng.3353  0.4
2015 Trynka G, Westra HJ, Slowikowski K, Hu X, Xu H, Stranger BE, Klein RJ, Han B, Raychaudhuri S. Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci. American Journal of Human Genetics. 97: 139-52. PMID 26140449 DOI: 10.1016/j.ajhg.2015.05.016  0.4
2015 Mitra A, Luna JI, Marusina AI, Merleev A, Kundu-Raychaudhuri S, Fiorentino D, Raychaudhuri SP, Maverakis E. Dual mTOR Inhibition is Required to Prevent TGF-β-Mediated Fibrosis: Implications for SclerodermaT. The Journal of Investigative Dermatology. PMID 26134944 DOI: 10.1038/jid.2015.252  0.32
2015 Islam AD, Selmi C, Datta-Mitra A, Sonu R, Chen M, Gershwin ME, Raychaudhuri SP. The changing faces of IgG4-related disease: Clinical manifestations and pathogenesis. Autoimmunity Reviews. PMID 26112170 DOI: 10.1016/j.autrev.2015.06.003  0.32
2015 Kim K, Jiang X, Cui J, Lu B, Costenbader KH, Sparks JA, Bang SY, Lee HS, Okada Y, Raychaudhuri S, Alfredsson L, Bae SC, Klareskog L, Karlson EW. Interactions between amino-acid-defined MHC class II variants and smoking for seropositive rheumatoid arthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 26098791 DOI: 10.1002/art.39228  0.4
2015 Ermann J, Rao DA, Teslovich NC, Brenner MB, Raychaudhuri S. Immune cell profiling to guide therapeutic decisions in rheumatic diseases. Nature Reviews. Rheumatology. PMID 26034835 DOI: 10.1038/nrrheum.2015.71  0.88
2015 Sul JH, Raj T, de Jong S, de Bakker PI, Raychaudhuri S, Ophoff RA, Stranger BE, Eskin E, Han B. Accurate and fast multiple-testing correction in eQTL studies. American Journal of Human Genetics. 96: 857-68. PMID 26027500 DOI: 10.1016/j.ajhg.2015.04.012  0.88
2015 Scott IC, Rijsdijk F, Walker J, Quist J, Spain SL, Tan R, Steer S, Okada Y, Raychaudhuri S, Cope AP, Lewis CM. Do Genetic Susceptibility Variants Associate with Disease Severity in Early Active Rheumatoid Arthritis? The Journal of Rheumatology. 42: 1131-40. PMID 25979711 DOI: 10.3899/jrheum.141211  0.88
2015 Ghoshal N, Talapatra S, Talukder P, Sengupta M, Ray SK, Chakraborty A, Raychaudhuri SS. Cross-adaptation to cadmium stress in Plantago ovata by pre-exposure to low dose of gamma rays: Effects on metallothionein and metal content. International Journal of Radiation Biology. 1-13. PMID 25968556 DOI: 10.3109/09553002.2015.1047984  0.56
2015 Raychaudhuri SK, Saxena A, Raychaudhuri SP. Role of IL-17 in the pathogenesis of psoriatic arthritis and axial spondyloarthritis. Clinical Rheumatology. 34: 1019-23. PMID 25939522 DOI: 10.1007/s10067-015-2961-7  0.32
2015 Viatte S, Plant D, Han B, Fu B, Yarwood A, Thomson W, Symmons DP, Worthington J, Young A, Hyrich KL, Morgan AW, Wilson AG, Isaacs JD, Raychaudhuri S, Barton A. Association of HLA-DRB1 haplotypes with rheumatoid arthritis severity, mortality, and treatment response. Jama. 313: 1645-56. PMID 25919528 DOI: 10.1001/jama.2015.3435  0.88
2015 Gutierrez-Achury J, Zhernakova A, Pulit SL, Trynka G, Hunt KA, Romanos J, Raychaudhuri S, van Heel DA, Wijmenga C, de Bakker PI. Fine mapping in the MHC region accounts for 18% additional genetic risk for celiac disease. Nature Genetics. 47: 577-8. PMID 25894500 DOI: 10.1038/ng.3268  0.88
2015 Datta-Mitra A, Kundu-Raychaudhuri S, Mitra A, Raychaudhuri SP. Cross talk between neuroregulatory molecule and monocyte: nerve growth factor activates the inflammasome. Plos One. 10: e0121626. PMID 25876154 DOI: 10.1371/journal.pone.0121626  0.32
2015 Diogo D, Bastarache L, Liao KP, Graham RR, Fulton RS, Greenberg JD, Eyre S, Bowes J, Cui J, Lee A, Pappas DA, Kremer JM, Barton A, Coenen MJ, Franke B, ... ... Raychaudhuri S, et al. TYK2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits. Plos One. 10: e0122271. PMID 25849893 DOI: 10.1371/journal.pone.0122271  0.88
2015 Kavanagh D, Yu Y, Schramm EC, Triebwasser M, Wagner EK, Raychaudhuri S, Daly MJ, Atkinson JP, Seddon JM. Rare genetic variants in the CFI gene are associated with advanced age-related macular degeneration and commonly result in reduced serum factor I levels. Human Molecular Genetics. 24: 3861-70. PMID 25788521 DOI: 10.1093/hmg/ddv091  0.88
2015 Pers TH, Karjalainen JM, Chan Y, Westra HJ, Wood AR, Yang J, Lui JC, Vedantam S, Gustafsson S, Esko T, Frayling T, Speliotes EK, Boehnke M, Raychaudhuri S, et al. Biological interpretation of genome-wide association studies using predicted gene functions. Nature Communications. 6: 5890. PMID 25597830 DOI: 10.1038/ncomms6890  0.88
2015 van Steenbergen HW, Raychaudhuri S, Rodríguez-Rodríguez L, Rantapää-Dahlqvist S, Berglin E, Toes RE, Huizinga TW, Fernández-Gutiérrez B, Gregersen PK, van der Helm-van Mil AH. Association of valine and leucine at HLA-DRB1 position 11 with radiographic progression in rheumatoid arthritis, independent of the shared epitope alleles but not independent of anti-citrullinated protein antibodies. Arthritis & Rheumatology (Hoboken, N.J.). 67: 877-86. PMID 25580908 DOI: 10.1002/art.39018  0.88
2015 Maverakis E, Kim K, Shimoda M, Gershwin ME, Patel F, Wilken R, Raychaudhuri S, Ruhaak LR, Lebrilla CB. Glycans in the immune system and The Altered Glycan Theory of Autoimmunity: a critical review. Journal of Autoimmunity. 57: 1-13. PMID 25578468 DOI: 10.1016/j.jaut.2014.12.002  0.32
2015 Patel F, Fitzmaurice S, Duong C, He Y, Fergus J, Raychaudhuri SP, Garcia MS, Maverakis E. Effective strategies for the management of pyoderma gangrenosum: a comprehensive review. Acta Dermato-Venereologica. 95: 525-31. PMID 25387526 DOI: 10.2340/00015555-2008  0.32
2015 Kim K, Bang SY, Lee HS, Cho SK, Choi CB, Sung YK, Kim TH, Jun JB, Yoo DH, Kang YM, Kim SK, Suh CH, Shim SC, Lee SS, Lee J, ... ... Raychaudhuri S, et al. High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci. Annals of the Rheumatic Diseases. 74: e13. PMID 24532676 DOI: 10.1136/annrheumdis-2013-204749  0.88
2015 Yarwood A, Han B, Raychaudhuri S, Bowes J, Lunt M, Pappas DA, Kremer J, Greenberg JD, Plenge R, Worthington J, Barton A, Eyre S. A weighted genetic risk score using all known susceptibility variants to estimate rheumatoid arthritis risk. Annals of the Rheumatic Diseases. 74: 170-6. PMID 24092415 DOI: 10.1136/annrheumdis-2013-204133  0.88
2014 Reynolds RJ, Ahmed AF, Danila MI, Hughes LB, Gregersen PK, Raychaudhuri S, Plenge RM, Bridges SL. HLA-DRB1-associated rheumatoid arthritis risk at multiple levels in African Americans: hierarchical classification systems, amino acid positions, and residues. Arthritis & Rheumatology (Hoboken, N.J.). 66: 3274-82. PMID 25524867 DOI: 10.1002/art.38855  0.88
2014 Frisell T, Hellgren K, Alfredsson L, Raychaudhuri S, Klareskog L, Askling J. Familial aggregation of arthritis-related diseases in seropositive and seronegative rheumatoid arthritis: a register-based case-control study in Sweden. Annals of the Rheumatic Diseases. PMID 25498119 DOI: 10.1136/annrheumdis-2014-206133  0.4
2014 Machado PM, Raychaudhuri SP. Disease activity measurements and monitoring in psoriatic arthritis and axial spondyloarthritis. Best Practice & Research. Clinical Rheumatology. 28: 711-28. PMID 25488780 DOI: 10.1016/j.berh.2014.10.004  0.32
2014 Datta-Mitra A, Riar NK, Raychaudhuri SP. Remission of psoriasis and psoriatic arthritis during bevacizumab therapy for renal cell cancer. Indian Journal of Dermatology. 59: 632. PMID 25484418 DOI: 10.4103/0019-5154.143574  0.32
2014 Roussos P, Mitchell AC, Voloudakis G, Fullard JF, Pothula VM, Tsang J, Stahl EA, Georgakopoulos A, Ruderfer DM, Charney A, Okada Y, Siminovitch KA, Worthington J, Padyukov L, Klareskog L, ... ... Raychaudhuri S, et al. A role for noncoding variation in schizophrenia. Cell Reports. 9: 1417-29. PMID 25453756 DOI: 10.1016/j.celrep.2014.10.015  0.88
2014 Gusev A, Lee SH, Trynka G, Finucane H, Vilhjálmsson BJ, Xu H, Zang C, Ripke S, Bulik-Sullivan B, Stahl E, Kähler AK, Hultman CM, Purcell SM, ... ... Raychaudhuri S, et al. Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases. American Journal of Human Genetics. 95: 535-52. PMID 25439723 DOI: 10.1016/j.ajhg.2014.10.004  0.88
2014 Lim ET, Liu YP, Chan Y, Tiinamaija T, Käräjämäki A, Madsen E, Altshuler DM, Raychaudhuri S, Groop L, Flannick J, Hirschhorn JN, Katsanis N, Daly MJ. A novel test for recessive contributions to complex diseases implicates Bardet-Biedl syndrome gene BBS10 in idiopathic type 2 diabetes and obesity. American Journal of Human Genetics. 95: 509-20. PMID 25439097 DOI: 10.1016/j.ajhg.2014.09.015  0.88
2014 Dunstan SJ, Hue NT, Han B, Li Z, Tram TT, Sim KS, Parry CM, Chinh NT, Vinh H, Lan NP, Thieu NT, Vinh PV, Koirala S, Dongol S, Arjyal A, ... ... Raychaudhuri S, et al. Variation at HLA-DRB1 is associated with resistance to enteric fever. Nature Genetics. 46: 1333-6. PMID 25383971 DOI: 10.1038/ng.3143  0.88
2014 Ogdie A, Schwartzman S, Eder L, Maharaj AB, Zisman D, Raychaudhuri SP, Reddy SM, Husni E. Comprehensive treatment of psoriatic arthritis: managing comorbidities and extraarticular manifestations. The Journal of Rheumatology. 41: 2315-22. PMID 25362717 DOI: 10.3899/jrheum.140882  0.32
2014 Kundu-Raychaudhuri S, Chen YJ, Wulff H, Raychaudhuri SP. Kv1.3 in psoriatic disease: PAP-1, a small molecule inhibitor of Kv1.3 is effective in the SCID mouse psoriasis--xenograft model. Journal of Autoimmunity. 55: 63-72. PMID 25175978 DOI: 10.1016/j.jaut.2014.07.003  0.32
2014 Deodhar A, Reveille JD, van den Bosch F, Braun J, Burgos-Vargas R, Caplan L, Clegg DO, Colbert RA, Gensler LS, van der Heijde D, van der Horst-Bruinsma IE, Inman RD, Maksymowych WP, Mease PJ, Raychaudhuri S, et al. The concept of axial spondyloarthritis: joint statement of the spondyloarthritis research and treatment network and the Assessment of SpondyloArthritis international Society in response to the US Food and Drug Administration's comments and concerns. Arthritis & Rheumatology (Hoboken, N.J.). 66: 2649-56. PMID 25154344 DOI: 10.1002/art.38776  0.32
2014 Okada Y, Han B, Tsoi LC, Stuart PE, Ellinghaus E, Tejasvi T, Chandran V, Pellett F, Pollock R, Bowcock AM, Krueger GG, Weichenthal M, Voorhees JJ, Rahman P, Gregersen PK, ... ... Raychaudhuri S, et al. Fine mapping major histocompatibility complex associations in psoriasis and its clinical subtypes. American Journal of Human Genetics. 95: 162-72. PMID 25087609 DOI: 10.1016/j.ajhg.2014.07.002  0.88
2014 Okada Y, Kim K, Han B, Pillai NE, Ong RT, Saw WY, Luo M, Jiang L, Yin J, Bang SY, Lee HS, Brown MA, Bae SC, Xu H, Teo YY, ... ... Raychaudhuri S, et al. Risk for ACPA-positive rheumatoid arthritis is driven by shared HLA amino acid polymorphisms in Asian and European populations. Human Molecular Genetics. 23: 6916-26. PMID 25070946 DOI: 10.1093/hmg/ddu387  0.4
2014 Schramm EC, Clark SJ, Triebwasser MP, Raychaudhuri S, Seddon JM, Atkinson JP. Genetic variants in the complement system predisposing to age-related macular degeneration: a review. Molecular Immunology. 61: 118-25. PMID 25034031 DOI: 10.1016/j.molimm.2014.06.032  0.88
2014 Hu X, Kim H, Raj T, Brennan PJ, Trynka G, Teslovich N, Slowikowski K, Chen WM, Onengut S, Baecher-Allan C, De Jager PL, Rich SS, Stranger BE, Brenner MB, Raychaudhuri S. Regulation of gene expression in autoimmune disease loci and the genetic basis of proliferation in CD4+ effector memory T cells. Plos Genetics. 10: e1004404. PMID 24968232 DOI: 10.1371/journal.pgen.1004404  0.88
2014 Kundu-Raychaudhuri S, Mitra A, Datta-Mitra A, Chaudhari AJ, Raychaudhuri SP. In vivo quantification of mouse autoimmune arthritis by PET/CT. International Journal of Rheumatic Diseases. PMID 24965561 DOI: 10.1111/1756-185X.12410  0.32
2014 Arking DE, Pulit SL, Crotti L, van der Harst P, Munroe PB, Koopmann TT, Sotoodehnia N, Rossin EJ, Morley M, Wang X, Johnson AD, Lundby A, Gudbjartsson DF, Noseworthy PA, Eijgelsheim M, ... ... Raychaudhuri S, et al. Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. Nature Genetics. 46: 826-36. PMID 24952745 DOI: 10.1038/ng.3014  0.88
2014 Yu Y, Triebwasser MP, Wong EK, Schramm EC, Thomas B, Reynolds R, Mardis ER, Atkinson JP, Daly M, Raychaudhuri S, Kavanagh D, Seddon JM. Whole-exome sequencing identifies rare, functional CFH variants in families with macular degeneration. Human Molecular Genetics. 23: 5283-93. PMID 24847005 DOI: 10.1093/hmg/ddu226  0.48
2014 Kundu-Raychaudhuri S, Datta-Mitra A, Abria CJ, Peters J, Raychaudhuri SP. Severe combined immunodeficiency mouse-psoriatic human skin xenograft model: a modern tool connecting bench to bedside. Indian Journal of Dermatology, Venereology and Leprology. 80: 204-13. PMID 24823397 DOI: 10.4103/0378-6323.132247  0.32
2014 Slowikowski K, Hu X, Raychaudhuri S. SNPsea: an algorithm to identify cell types, tissues and pathways affected by risk loci. Bioinformatics (Oxford, England). 30: 2496-7. PMID 24813542 DOI: 10.1093/bioinformatics/btu326  0.88
2014 Raj T, Rothamel K, Mostafavi S, Ye C, Lee MN, Replogle JM, Feng T, Lee M, Asinovski N, Frohlich I, Imboywa S, Von Korff A, Okada Y, Patsopoulos NA, Davis S, ... ... Raychaudhuri S, et al. Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes. Science (New York, N.Y.). 344: 519-23. PMID 24786080 DOI: 10.1126/science.1249547  0.88
2014 Pillai NE, Okada Y, Saw WY, Ong RT, Wang X, Tantoso E, Xu W, Peterson TA, Bielawny T, Ali M, Tay KY, Poh WT, Tan LW, Koo SH, Lim WY, ... ... Raychaudhuri S, et al. Predicting HLA alleles from high-resolution SNP data in three Southeast Asian populations. Human Molecular Genetics. 23: 4443-51. PMID 24698974 DOI: 10.1093/hmg/ddu149  0.88
2014 Brownstein CA, Beggs AH, Homer N, Merriman B, Yu TW, Flannery KC, DeChene ET, Towne MC, Savage SK, Price EN, Holm IA, Luquette LJ, Lyon E, Majzoub J, Neupert P, ... ... Raychaudhuri S, et al. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biology. 15: R53. PMID 24667040 DOI: 10.1186/gb-2014-15-3-r53  0.32
2014 Han B, Diogo D, Eyre S, Kallberg H, Zhernakova A, Bowes J, Padyukov L, Okada Y, González-Gay MA, Rantapää-Dahlqvist S, Martin J, Huizinga TW, Plenge RM, Worthington J, Gregersen PK, ... ... Raychaudhuri S, et al. Fine mapping seronegative and seropositive rheumatoid arthritis to shared and distinct HLA alleles by adjusting for the effects of heterogeneity. American Journal of Human Genetics. 94: 522-32. PMID 24656864 DOI: 10.1016/j.ajhg.2014.02.013  0.88
2014 Lee MN, Ye C, Villani AC, Raj T, Li W, Eisenhaure TM, Imboywa SH, Chipendo PI, Ran FA, Slowikowski K, Ward LD, Raddassi K, McCabe C, Lee MH, Frohlich IY, ... ... Raychaudhuri S, et al. Common genetic variants modulate pathogen-sensing responses in human dendritic cells. Science (New York, N.Y.). 343: 1246980. PMID 24604203 DOI: 10.1126/science.1246980  0.88
2014 Raychaudhuri SP, Deodhar A. The classification and diagnostic criteria of ankylosing spondylitis. Journal of Autoimmunity. 48: 128-33. PMID 24534717 DOI: 10.1016/j.jaut.2014.01.015  0.32
2014 Okada Y, Diogo D, Greenberg JD, Mouassess F, Achkar WA, Fulton RS, Denny JC, Gupta N, Mirel D, Gabriel S, Li G, Kremer JM, Pappas DA, Carroll RJ, Eyler AE, ... ... Raychaudhuri S, et al. Integration of sequence data from a Consanguineous family with genetic data from an outbred population identifies PLB1 as a candidate rheumatoid arthritis risk gene. Plos One. 9: e87645. PMID 24520335 DOI: 10.1371/journal.pone.0087645  0.88
2014 Raychaudhuri SK, Raychaudhuri SP. mTOR Signaling Cascade in Psoriatic Disease: Double Kinase mTOR Inhibitor a Novel Therapeutic Target. Indian Journal of Dermatology. 59: 67-70. PMID 24470663 DOI: 10.4103/0019-5154.123499  0.32
2014 Raychaudhuri SK, Maverakis E, Raychaudhuri SP. Diagnosis and classification of psoriasis. Autoimmunity Reviews. 13: 490-5. PMID 24434359 DOI: 10.1016/j.autrev.2014.01.008  0.32
2014 Han B, Kang EY, Raychaudhuri S, de Bakker PI, Eskin E. Fast pairwise IBD association testing in genome-wide association studies. Bioinformatics (Oxford, England). 30: 206-13. PMID 24158599 DOI: 10.1093/bioinformatics/btt609  0.88
2014 Liao KP, Diogo D, Cui J, Cai T, Okada Y, Gainer VS, Murphy SN, Gupta N, Mirel D, Ananthakrishnan AN, Szolovits P, Shaw SY, Raychaudhuri S, Churchill S, Kohane I, et al. Association between low density lipoprotein and rheumatoid arthritis genetic factors with low density lipoprotein levels in rheumatoid arthritis and non-rheumatoid arthritis controls. Annals of the Rheumatic Diseases. 73: 1170-5. PMID 23716066 DOI: 10.1136/annrheumdis-2012-203202  0.88
2014 Talapatra S, Ghoshal N, Raychaudhuri SS. Molecular characterization, modeling and expression analysis of a somatic embryogenesis receptor kinase (SERK) gene in Momordica charantia L. during somatic embryogenesis Plant Cell, Tissue and Organ Culture. 116: 271-283. DOI: 10.1007/s11240-013-0401-4  0.56
2014 Mitra A, Raychaudhuri SK, Raychaudhuri SP. IL-17 and IL-17: An auspicious therapeutic target for psoriatic disease Actas Dermo-Sifiliograficas. 105: 21-33.  0.32
2013 Gusev A, Bhatia G, Zaitlen N, Vilhjalmsson BJ, Diogo D, Stahl EA, Gregersen PK, Worthington J, Klareskog L, Raychaudhuri S, Plenge RM, Pasaniuc B, Price AL. Quantifying missing heritability at known GWAS loci. Plos Genetics. 9: e1003993. PMID 24385918 DOI: 10.1371/journal.pgen.1003993  0.88
2013 Trynka G, Raychaudhuri S. Using chromatin marks to interpret and localize genetic associations to complex human traits and diseases. Current Opinion in Genetics & Development. 23: 635-41. PMID 24287333 DOI: 10.1016/j.gde.2013.10.009  0.88
2013 Hu X, Kim H, Brennan PJ, Han B, Baecher-Allan CM, De Jager PL, Brenner MB, Raychaudhuri S. Application of user-guided automated cytometric data analysis to large-scale immunoprofiling of invariant natural killer T cells. Proceedings of the National Academy of Sciences of the United States of America. 110: 19030-5. PMID 24191009 DOI: 10.1073/pnas.1318322110  0.88
2013 Seddon JM, Yu Y, Miller EC, Reynolds R, Tan PL, Gowrisankar S, Goldstein JI, Triebwasser M, Anderson HE, Zerbib J, Kavanagh D, Souied E, Katsanis N, Daly MJ, Atkinson JP, ... Raychaudhuri S, et al. Rare variants in CFI, C3 and C9 are associated with high risk of advanced age-related macular degeneration. Nature Genetics. 45: 1366-70. PMID 24036952 DOI: 10.1038/ng.2741  0.88
2013 Datta-Mitra A, Mitra A, Ray R, Raychaudhuri SP, Kundu-Raychaudhuri S. 1,25-Dihydroxyvitamin D3-3-bromoacetate, a novel vitamin D analog induces immunosuppression through PI3K/Akt/mTOR signaling cascade. International Immunopharmacology. 17: 744-51. PMID 24036370 DOI: 10.1016/j.intimp.2013.08.009  0.32
2013 Jia X, Han B, Onengut-Gumuscu S, Chen WM, Concannon PJ, Rich SS, Raychaudhuri S, de Bakker PI. Imputing amino acid polymorphisms in human leukocyte antigens. Plos One. 8: e64683. PMID 23762245 DOI: 10.1371/journal.pone.0064683  0.88
2013 Xie G, Roshandel D, Sherva R, Monach PA, Lu EY, Kung T, Carrington K, Zhang SS, Pulit SL, Ripke S, Carette S, Dellaripa PF, Edberg JC, Hoffman GS, Khalidi N, ... ... Raychaudhuri S, et al. Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis. Arthritis and Rheumatism. 65: 2457-68. PMID 23740775 DOI: 10.1002/art.38036  0.88
2013 Li G, Diogo D, Wu D, Spoonamore J, Dancik V, Franke L, Kurreeman F, Rossin EJ, Duclos G, Hartland C, Zhou X, Li K, Liu J, De Jager PL, Siminovitch KA, ... ... Raychaudhuri S, et al. Human genetics in rheumatoid arthritis guides a high-throughput drug screen of the CD40 signaling pathway. Plos Genetics. 9: e1003487. PMID 23696745 DOI: 10.1371/journal.pgen.1003487  0.88
2013 Cui J, Stahl EA, Saevarsdottir S, Miceli C, Diogo D, Trynka G, Raj T, Mirkov MU, Canhao H, Ikari K, Terao C, Okada Y, Wedrén S, Askling J, Yamanaka H, ... ... Raychaudhuri S, et al. Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis. Plos Genetics. 9: e1003394. PMID 23555300 DOI: 10.1371/journal.pgen.1003394  0.88
2013 Raj T, Kuchroo M, Replogle JM, Raychaudhuri S, Stranger BE, De Jager PL. Common risk alleles for inflammatory diseases are targets of recent positive selection. American Journal of Human Genetics. 92: 517-29. PMID 23522783 DOI: 10.1016/j.ajhg.2013.03.001  0.88
2013 Ghoshal N, Talapatra S, Moulick A, Chakraborty A, Raychaudhuri SS. Alterations in transcriptome and proteome on metallothioneins following oxidative stress induced by sublethal doses of cadmium and gamma rays in Plantago ovata. International Journal of Radiation Biology. 89: 571-82. PMID 23461270 DOI: 10.3109/09553002.2013.782109  0.56
2013 Sengupta M, Chakraborty A, Raychaudhuri SS. Ionizing radiation induced changes in phenotype, photosynthetic pigments and free polyamine levels in Vigna radiata (L.) Wilczek. Applied Radiation and Isotopes : Including Data, Instrumentation and Methods For Use in Agriculture, Industry and Medicine. 75: 44-9. PMID 23454839 DOI: 10.1016/j.apradiso.2013.01.036  0.56
2013 Viatte S, Plant D, Raychaudhuri S. Genetics and epigenetics of rheumatoid arthritis. Nature Reviews. Rheumatology. 9: 141-53. PMID 23381558 DOI: 10.1038/nrrheum.2012.237  0.88
2013 Lim ET, Raychaudhuri S, Sanders SJ, Stevens C, Sabo A, MacArthur DG, Neale BM, Kirby A, Ruderfer DM, Fromer M, Lek M, Liu L, Flannick J, Ripke S, Nagaswamy U, et al. Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders. Neuron. 77: 235-42. PMID 23352160 DOI: 10.1016/j.neuron.2012.12.029  0.88
2013 Hwang JY, Lee SH, Go MJ, Kim BJ, Kou I, Ikegawa S, Guo Y, Deng HW, Raychaudhuri S, Kim YJ, Oh JH, Kim Y, Moon S, Kim DJ, Koo H, et al. Meta-analysis identifies a MECOM gene as a novel predisposing factor of osteoporotic fracture. Journal of Medical Genetics. 50: 212-9. PMID 23349225 DOI: 10.1136/jmedgenet-2012-101156  0.88
2013 Datta Mitra A, Raychaudhuri SP, Abria CJ, Mitra A, Wright R, Ray R, Kundu-Raychaudhuri S. 1α,25-Dihydroxyvitamin-D3-3-bromoacetate regulates AKT/mTOR signaling cascades: a therapeutic agent for psoriasis. The Journal of Investigative Dermatology. 133: 1556-64. PMID 23314787 DOI: 10.1038/jid.2013.3  0.32
2013 Trynka G, Sandor C, Han B, Xu H, Stranger BE, Liu XS, Raychaudhuri S. Chromatin marks identify critical cell types for fine mapping complex trait variants Nature Genetics. 45: 124-130. PMID 23263488 DOI: 10.1038/ng.2504  0.88
2013 Diogo D, Kurreeman F, Stahl EA, Liao KP, Gupta N, Greenberg JD, Rivas MA, Hickey B, Flannick J, Thomson B, Guiducci C, Ripke S, Adzhubey I, Barton A, Kremer JM, ... ... Raychaudhuri S, et al. Rare, low-frequency, and common variants in the protein-coding sequence of biological candidate genes from GWASs contribute to risk of rheumatoid arthritis. American Journal of Human Genetics. 92: 15-27. PMID 23261300 DOI: 10.1016/j.ajhg.2012.11.012  0.88
2013 Helliwell PS, FitzGerald O, Fransen J, Gladman DD, Kreuger GG, Callis-Duffin K, McHugh N, Mease PJ, Strand V, Waxman R, Azevedo VF, Beltran Ostos A, Carneiro S, Cauli A, Espinoza LR, ... ... Raychaudhuri SP, et al. The development of candidate composite disease activity and responder indices for psoriatic arthritis (GRACE project). Annals of the Rheumatic Diseases. 72: 986-91. PMID 22798567 DOI: 10.1136/annrheumdis-2012-201341  0.32
2013 Raychaudhuri SP. Role of IL-17 in psoriasis and psoriatic arthritis Clinical Reviews in Allergy and Immunology. 44: 183-193. PMID 22362575 DOI: 10.1007/s12016-012-8307-1  0.32
2013 Raychaudhuri SP. A cutting edge overview: Psoriatic disease Clinical Reviews in Allergy and Immunology. 44: 109-113. PMID 22359072 DOI: 10.1007/s12016-012-8309-z  0.32
2013 Siegel D, Devaraj S, Mitra A, Raychaudhuri SP, Raychaudhuri SK, Jialal I. Inflammation, atherosclerosis, and psoriasis Clinical Reviews in Allergy and Immunology. 44: 194-204. PMID 22359071 DOI: 10.1007/s12016-012-8308-0  0.32
2013 Sivamani RK, Goodarzi H, Garcia MS, Raychaudhuri SP, Wehrli LN, Ono Y, Maverakis E. Biologic therapies in the treatment of psoriasis: a comprehensive evidence-based basic science and clinical review and a practical guide to tuberculosis monitoring. Clinical Reviews in Allergy & Immunology. 44: 121-40. PMID 22311162 DOI: 10.1007/s12016-012-8301-7  0.32
2013 Nguyen CT, Raychaudhuri SP. Authors′ reply Indian Journal of Dermatology. 58: 81. DOI: 10.4103/0019-5154.105320  0.32
2013 Bandyopadhyay S, Raychaudhuri SS. Development and comparison of RAPD, SCAR and AFLP markers for distinguishing some medicinally important species of the genus Phyllanthus Plant Biosystems. 147: 12-20. DOI: 10.1080/11263504.2011.635714  0.56
2013 Saxena A, Raychaudhuri SK, Raychaudhuri SP. Rheumatoid Arthritis: Disease Pathophysiology Inflammation, Advancing Age and Nutrition: Research and Clinical Interventions. 215-229. DOI: 10.1016/B978-0-12-397803-5.00018-6  0.32
2012 Eyre S, Bowes J, Diogo D, Lee A, Barton A, Martin P, Zhernakova A, Stahl E, Viatte S, McAllister K, Amos CI, Padyukov L, Toes RE, Huizinga TW, Wijmenga C, ... ... Raychaudhuri S, et al. High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis. Nature Genetics. 44: 1336-40. PMID 23143596 DOI: 10.1038/ng.2462  0.88
2012 Jostins L, Ripke S, Weersma RK, Duerr RH, McGovern DP, Hui KY, Lee JC, Schumm LP, Sharma Y, Anderson CA, Essers J, Mitrovic M, Ning K, Cleynen I, Theatre E, ... ... Raychaudhuri S, et al. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature. 491: 119-24. PMID 23128233 DOI: 10.1038/nature11582  0.88
2012 Raychaudhuri SP, Mitra A. Polymyositis and dermatomyositis: Disease spectrum and classification. Indian Journal of Dermatology. 57: 366-70. PMID 23112356 DOI: 10.4103/0019-5154.100477  0.32
2012 Gregersen PK, Kosoy R, Lee AT, Lamb J, Sussman J, McKee D, Simpfendorfer KR, Pirskanen-Matell R, Piehl F, Pan-Hammarstrom Q, Verschuuren JJ, Titulaer MJ, Niks EH, Marx A, Ströbel P, ... ... Raychaudhuri S, et al. Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08. Annals of Neurology. 72: 927-35. PMID 23055271 DOI: 10.1002/ana.23691  0.88
2012 Raychaudhuri S, Rich SS. Autoimmunity: insights from human genomics. Current Opinion in Immunology. 24: 513-5. PMID 23036514 DOI: 10.1016/j.coi.2012.09.006  0.88
2012 de Bakker PI, Raychaudhuri S. Interrogating the major histocompatibility complex with high-throughput genomics. Human Molecular Genetics. 21: R29-36. PMID 22976473 DOI: 10.1093/hmg/dds384  0.88
2012 Scott RA, Lagou V, Welch RP, Wheeler E, Montasser ME, Luan J, Mägi R, Strawbridge RJ, Rehnberg E, Gustafsson S, Kanoni S, Rasmussen-Torvik LJ, Yengo L, Lecoeur C, Shungin D, ... ... Raychaudhuri S, et al. Large-scale association analyses identify new loci influencing glycemic traits and provide insight into the underlying biological pathways. Nature Genetics. 44: 991-1005. PMID 22885924 DOI: 10.1038/ng.2385  0.88
2012 Morris AP, Voight BF, Teslovich TM, Ferreira T, Segrè AV, Steinthorsdottir V, Strawbridge RJ, Khan H, Grallert H, Mahajan A, Prokopenko I, Kang HM, Dina C, Esko T, Fraser RM, ... ... Raychaudhuri S, et al. Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes. Nature Genetics. 44: 981-90. PMID 22885922 DOI: 10.1038/ng.2383  0.88
2012 Mitra A, Raychaudhuri SK, Raychaudhuri SP. IL-22 induced cell proliferation is regulated by PI3K/Akt/mTOR signaling cascade Cytokine. 60: 38-42. PMID 22840496 DOI: 10.1016/j.cyto.2012.06.316  0.32
2012 Sobrin L, Ripke S, Yu Y, Fagerness J, Bhangale TR, Tan PL, Souied EH, Buitendijk GH, Merriam JE, Richardson AJ, Raychaudhuri S, Reynolds R, Chin KA, Lee AY, Leveziel N, et al. Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes. Ophthalmology. 119: 1874-85. PMID 22705344 DOI: 10.1016/j.ophtha.2012.03.014  0.88
2012 Stahl EA, Raychaudhuri S. Rheumatoid arthritis. Evidence for a genetic component to disease severity in RA. Nature Reviews. Rheumatology. 8: 312-3. PMID 22647779 DOI: 10.1038/nrrheum.2012.74  0.88
2012 Invernizzi P, Ransom M, Raychaudhuri S, Kosoy R, Lleo A, Shigeta R, Franke A, Bossa F, Amos CI, Gregersen PK, Siminovitch KA, Cusi D, de Bakker PI, Podda M, Gershwin ME, et al. Classical HLA-DRB1 and DPB1 alleles account for HLA associations with primary biliary cirrhosis. Genes and Immunity. 13: 461-8. PMID 22573116 DOI: 10.1038/gene.2012.17  0.88
2012 Mitra AD, Schrock D, Raychaudhuri SP, Raychaudhuri SK. Inflammasomes and diseases of the skin Indian Journal of Dermatology, Venereology and Leprology. 78: 394-402. PMID 22565453 DOI: 10.4103/0378-6323.95474  0.32
2012 Stahl EA, Wegmann D, Trynka G, Gutierrez-Achury J, Do R, Voight BF, Kraft P, Chen R, Kallberg HJ, Kurreeman FA, Kathiresan S, Wijmenga C, Gregersen PK, ... ... Raychaudhuri S, et al. Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis. Nature Genetics. 44: 483-9. PMID 22446960 DOI: 10.1038/ng.2232  0.88
2012 Mitra A, Raychaudhuri SK, Raychaudhuri SP. Functional role of IL-22 in psoriatic arthritis Arthritis Research and Therapy. 14. PMID 22417743 DOI: 10.1186/ar3781  0.32
2012 Kurreeman FA, Stahl EA, Okada Y, Liao K, Diogo D, Raychaudhuri S, Freudenberg J, Kochi Y, Patsopoulos NA, Gupta N, Sandor C, Bang SY, Lee HS, Padyukov L, et al. Use of a multiethnic approach to identify rheumatoid- arthritis-susceptibility loci, 1p36 and 17q12. American Journal of Human Genetics. 90: 524-32. PMID 22365150 DOI: 10.1016/j.ajhg.2012.01.010  0.88
2012 Raychaudhuri SP. Comorbidities of psoriatic arthritis - Metabolic syndrome and prevention: A report from the GRAPPA 2010 annual meeting Journal of Rheumatology. 39: 437-440. PMID 22298276 DOI: 10.3899/jrheum.111244  0.32
2012 Raychaudhuri S, Sandor C, Stahl EA, Freudenberg J, Lee HS, Jia X, Alfredsson L, Padyukov L, Klareskog L, Worthington J, Siminovitch KA, Bae SC, Plenge RM, Gregersen PK, de Bakker PI. Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis. Nature Genetics. 44: 291-6. PMID 22286218 DOI: 10.1038/ng.1076  0.88
2012 Raychaudhuri SP, Raychaudhuri SK, Genovese MC. IL-17 receptor and its functional significance in psoriatic arthritis Molecular and Cellular Biochemistry. 359: 419-429. PMID 21894442 DOI: 10.1007/s11010-011-1036-6  0.32
2012 Plenge RM, Lee YC, Raychaudhuri S, Solomon DH. Pharmacogenetics of rheumatology: Focus on rheumatoid arthritis Principles of Pharmacogenetics and Pharmacogenomics. 188-201. DOI: 10.1017/CBO9781139051194.020  0.88
2012 Banerjee A, Bandyopadhyay S, Raychaudhuri SS. In vitro regeneration of hypericum perforatum L. using thidiazuron and analysis of genetic stability of regenerants Indian Journal of Biotechnology. 11: 92-98.  0.56
2011 Hu X, Kim H, Stahl E, Plenge R, Daly M, Raychaudhuri S. Integrating Autoimmune Risk Loci with Gene-Expression Data Identifies Specific Pathogenic Immune Cell Subsets. American Journal of Human Genetics. 89: 682. PMID 27880885 DOI: 10.1016/j.ajhg.2011.10.010  0.76
2011 Trouw LA, Böhringer S, Daha NA, Stahl EA, Raychaudhuri S, Kurreeman FA, Stoeken-Rijsbergen G, Houwing-Duistermaat JJ, Huizinga TW, Toes RE. The major risk alleles of age-related macular degeneration (AMD) in CFH do not play a major role in rheumatoid arthritis (RA). Clinical and Experimental Immunology. 166: 333-7. PMID 22059990 DOI: 10.1111/j.1365-2249.2011.04482.x  0.88
2011 Vishal AA, Mishra A, Raychaudhuri SP. A double blind, randomized, placebo controlled clinical study evaluates the early efficacy of Aflapin® in subjects with osteoarthritis of knee International Journal of Medical Sciences. 8: 615-622. PMID 22022214  0.32
2011 Raychaudhuri S, Iartchouk O, Chin K, Tan PL, Tai AK, Ripke S, Gowrisankar S, Vemuri S, Montgomery K, Yu Y, Reynolds R, Zack DJ, Campochiaro B, Campochiaro P, Katsanis N, et al. A rare penetrant mutation in CFH confers high risk of age-related macular degeneration. Nature Genetics. 43: 1232-6. PMID 22019782 DOI: 10.1038/ng.976  0.88
2011 Hu X, Kim H, Stahl E, Plenge R, Daly M, Raychaudhuri S. Integrating autoimmune risk loci with gene-expression data identifies specific pathogenic immune cell subsets. American Journal of Human Genetics. 89: 496-506. PMID 21963258 DOI: 10.1016/j.ajhg.2011.09.002  0.88
2011 Raychaudhuri S. Mapping rare and common causal alleles for complex human diseases. Cell. 147: 57-69. PMID 21962507 DOI: 10.1016/j.cell.2011.09.011  0.88
2011 Sklar P, Ripke S, Scott LJ, Andreassen OA, Cichon S, Craddock N, Edenberg HJ, Nurnberger JI, Rietschel M, Blackwood D, Corvin A, Flickinger M, Guan W, Mattingsdal M, McQuillin A, ... ... Raychaudhuri S, et al. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4 Nature Genetics. 43: 977-985. PMID 21926972 DOI: 10.1038/ng.943  0.88
2011 Raychaudhuri SP, Raychaudhuri SK, Atkuri KR, Herzenberg LA. Nerve growth factor: A key local regulator in the pathogenesis of inflammatory arthritis Arthritis and Rheumatism. 63: 3243-3252. PMID 21792838 DOI: 10.1002/art.30564  0.32
2011 Yu Y, Bhangale TR, Fagerness J, Ripke S, Thorleifsson G, Tan PL, Souied EH, Richardson AJ, Merriam JE, Buitendijk GH, Reynolds R, Raychaudhuri S, Chin KA, Sobrin L, Evangelou E, et al. Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration. Human Molecular Genetics. 20: 3699-709. PMID 21665990 DOI: 10.1093/hmg/ddr270  0.88
2011 Raychaudhuri S. VIZ-GRAIL: visualizing functional connections across disease loci. Bioinformatics (Oxford, England). 27: 1589-90. PMID 21505031 DOI: 10.1093/bioinformatics/btr185  0.88
2011 Janse M, Lamberts LE, Franke L, Raychaudhuri S, Ellinghaus E, Muri Boberg K, Melum E, Folseraas T, Schrumpf E, Bergquist A, Björnsson E, Fu J, Jan Westra H, Groen HJ, Fehrmann RS, et al. Three ulcerative colitis susceptibility loci are associated with primary sclerosing cholangitis and indicate a role for IL2, REL, and CARD9. Hepatology (Baltimore, Md.). 53: 1977-85. PMID 21425313 DOI: 10.1002/hep.24307  0.88
2011 Chen R, Stahl EA, Kurreeman FA, Gregersen PK, Siminovitch KA, Worthington J, Padyukov L, Raychaudhuri S, Plenge RM. Fine mapping the TAGAP risk locus in rheumatoid arthritis. Genes and Immunity. 12: 314-8. PMID 21390051 DOI: 10.1038/gene.2011.8  0.88
2011 Zhernakova A, Stahl EA, Trynka G, Raychaudhuri S, Festen EA, Franke L, Westra HJ, Fehrmann RS, Kurreeman FA, Thomson B, Gupta N, Romanos J, McManus R, Ryan AW, Turner G, et al. Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci. Plos Genetics. 7: e1002004. PMID 21383967 DOI: 10.1371/journal.pgen.1002004  0.88
2011 Saxena A, Raychaudhuri SK, Raychaudhuri SP. Interleukin-17-induced proliferation of fibroblast-like synovial cells is mTOR dependent Arthritis and Rheumatism. 63: 1465-1466. PMID 21305532 DOI: 10.1002/art.30278  0.32
2011 Rossin EJ, Lage K, Raychaudhuri S, Xavier RJ, Tatar D, Benita Y, Cotsapas C, Daly MJ. Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology. Plos Genetics. 7: e1001273. PMID 21249183 DOI: 10.1371/journal.pgen.1001273  0.88
2011 Kurreeman F, Liao K, Chibnik L, Hickey B, Stahl E, Gainer V, Li G, Bry L, Mahan S, Ardlie K, Thomson B, Szolovits P, Churchill S, Murphy SN, Cai T, ... Raychaudhuri S, et al. Genetic basis of autoantibody positive and negative rheumatoid arthritis risk in a multi-ethnic cohort derived from electronic health records. American Journal of Human Genetics. 88: 57-69. PMID 21211616 DOI: 10.1016/j.ajhg.2010.12.007  0.88
2011 Saha P, Bandyopadhyay S, Raychaudhuri SS. Formulation of nutrient medium for in vitro somatic embryo induction in plantago ovata forsk Biological Trace Element Research. 140: 225-243. PMID 20405339 DOI: 10.1007/s12011-010-8684-3  0.56
2011 Ratnarathorn M, Raychaudhuri SP, Naguwa S. Disseminated granuloma annulare: A cutaneous adverse effect of anti-TNF agents Indian Journal of Dermatology. 56: 752-754. DOI: 10.4103/0019-5154.91847  0.32
2010 Franke A, McGovern DP, Barrett JC, Wang K, Radford-Smith GL, Ahmad T, Lees CW, Balschun T, Lee J, Roberts R, Anderson CA, Bis JC, Bumpstead S, Ellinghaus D, Festen EM, ... ... Raychaudhuri S, et al. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. Nature Genetics. 42: 1118-25. PMID 21102463 DOI: 10.1038/ng.717  0.88
2010 Speliotes EK, Willer CJ, Berndt SI, Monda KL, Thorleifsson G, Jackson AU, Lango Allen H, Lindgren CM, Luan J, Mägi R, Randall JC, Vedantam S, Winkler TW, Qi L, Workalemahu T, ... ... Raychaudhuri S, et al. Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. Nature Genetics. 42: 937-48. PMID 20935630 DOI: 10.1038/ng.686  0.88
2010 Lango Allen H, Estrada K, Lettre G, Berndt SI, Weedon MN, Rivadeneira F, Willer CJ, Jackson AU, Vedantam S, Raychaudhuri S, Ferreira T, Wood AR, Weyant RJ, Segrè AV, Speliotes EK, et al. Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature. 467: 832-8. PMID 20881960 DOI: 10.1038/nature09410  0.88
2010 Raychaudhuri S, Korn JM, McCarroll SA, Altshuler D, Sklar P, Purcell S, Daly MJ. Accurately assessing the risk of schizophrenia conferred by rare copy-number variation affecting genes with brain function. Plos Genetics. 6: e1001097. PMID 20838587 DOI: 10.1371/journal.pgen.1001097  0.88
2010 Raychaudhuri S, Ripke S, Li M, Neale BM, Fagerness J, Reynolds R, Sobrin L, Swaroop A, Abecasis G, Seddon JM, Daly MJ. Associations of CFHR1-CFHR3 deletion and a CFH SNP to age-related macular degeneration are not independent. Nature Genetics. 42: 553-5; author reply . PMID 20581873 DOI: 10.1038/ng0710-553  0.88
2010 Voight BF, Scott LJ, Steinthorsdottir V, Morris AP, Dina C, Welch RP, Zeggini E, Huth C, Aulchenko YS, Thorleifsson G, McCulloch LJ, Ferreira T, Grallert H, Amin N, Wu G, ... ... Raychaudhuri S, et al. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Nature Genetics. 42: 579-89. PMID 20581827 DOI: 10.1038/ng.609  0.88
2010 Plenge RM, Raychaudhuri S. Leveraging human genetics to develop future therapeutic strategies in rheumatoid arthritis. Rheumatic Diseases Clinics of North America. 36: 259-70. PMID 20510233 DOI: 10.1016/j.rdc.2010.03.002  0.88
2010 Stahl EA, Raychaudhuri S, Remmers EF, Xie G, Eyre S, Thomson BP, Li Y, Kurreeman FA, Zhernakova A, Hinks A, Guiducci C, Chen R, Alfredsson L, Amos CI, Ardlie KG, et al. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. Nature Genetics. 42: 508-14. PMID 20453842 DOI: 10.1038/ng.582  0.88
2010 Neale BM, Fagerness J, Reynolds R, Sobrin L, Parker M, Raychaudhuri S, Tan PL, Oh EC, Merriam JE, Souied E, Bernstein PS, Li B, Frederick JM, Zhang K, Brantley MA, et al. Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC). Proceedings of the National Academy of Sciences of the United States of America. 107: 7395-400. PMID 20385826 DOI: 10.1073/pnas.0912019107  0.88
2010 Cui J, Saevarsdottir S, Thomson B, Padyukov L, van der Helm-van Mil AH, Nititham J, Hughes LB, de Vries N, Raychaudhuri S, Alfredsson L, Askling J, Wedrén S, Ding B, Guiducci C, Wolbink GJ, et al. Rheumatoid arthritis risk allele PTPRC is also associated with response to anti-tumor necrosis factor alpha therapy. Arthritis and Rheumatism. 62: 1849-61. PMID 20309874 DOI: 10.1002/art.27457  0.88
2010 Liao KP, Cai T, Gainer V, Goryachev S, Zeng-treitler Q, Raychaudhuri S, Szolovits P, Churchill S, Murphy S, Kohane I, Karlson EW, Plenge RM. Electronic medical records for discovery research in rheumatoid arthritis. Arthritis Care & Research. 62: 1120-7. PMID 20235204 DOI: 10.1002/acr.20184  0.88
2010 Karlson EW, Chibnik LB, Kraft P, Cui J, Keenan BT, Ding B, Raychaudhuri S, Klareskog L, Alfredsson L, Plenge RM. Cumulative association of 22 genetic variants with seropositive rheumatoid arthritis risk Annals of the Rheumatic Diseases. 69: 1077-1085. PMID 20233754 DOI: 10.1136/ard.2009.120170  0.88
2010 Beroukhim R, Mermel CH, Porter D, Wei G, Raychaudhuri S, Donovan J, Barretina J, Boehm JS, Dobson J, Urashima M, Mc Henry KT, Pinchback RM, Ligon AH, Cho YJ, Haery L, et al. The landscape of somatic copy-number alteration across human cancers. Nature. 463: 899-905. PMID 20164920 DOI: 10.1038/nature08822  0.88
2010 Raychaudhuri S. Recent advances in the genetics of rheumatoid arthritis. Current Opinion in Rheumatology. 22: 109-18. PMID 20075733 DOI: 10.1097/BOR.0b013e328336474d  0.88
2009 Raychaudhuri S, Thomson BP, Remmers EF, Eyre S, Hinks A, Guiducci C, Catanese JJ, Xie G, Stahl EA, Chen R, Alfredsson L, Amos CI, Ardlie KG, Barton A, et al. Genetic variants at CD28, PRDM1 and CD2/CD58 are associated with rheumatoid arthritis risk. Nature Genetics. 41: 1313-8. PMID 19898481 DOI: 10.1038/ng.479  0.88
2009 van der Linden MP, Feitsma AL, le Cessie S, Kern M, Olsson LM, Raychaudhuri S, Begovich AB, Chang M, Catanese JJ, Kurreeman FA, van Nies J, van der Heijde DM, Gregersen PK, Huizinga TW, Toes RE, et al. Association of a single-nucleotide polymorphism in CD40 with the rate of joint destruction in rheumatoid arthritis. Arthritis and Rheumatism. 60: 2242-7. PMID 19644859 DOI: 10.1002/art.24721  0.88
2009 Raychaudhuri S, Plenge RM, Rossin EJ, Ng AC, Purcell SM, Sklar P, Scolnick EM, Xavier RJ, Altshuler D, Daly MJ. Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. Plos Genetics. 5: e1000534. PMID 19557189 DOI: 10.1371/journal.pgen.1000534  0.88
2009 De Jager PL, Jia X, Wang J, de Bakker PI, Ottoboni L, Aggarwal NT, Piccio L, Raychaudhuri S, Tran D, Aubin C, Briskin R, Romano S, Baranzini SE, McCauley JL, et al. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. Nature Genetics. 41: 776-82. PMID 19525953 DOI: 10.1038/ng.401  0.88
2009 Kraff P, Raychaudhuri S. Complex diseases, complex genes Epidemiology. 20: 508-511. PMID 19525687 DOI: 10.1097/EDE.0b013e3181a93b98  0.88
2009 Lee YC, Raychaudhuri S, Cui J, De Vivo I, Ding B, Alfredsson L, Padyukov L, Costenbader KH, Seielstad M, Graham RR, Klareskog L, Gregersen PK, Plenge RM, Karlson EW. The PRL -1149 G/T polymorphism and rheumatoid arthritis susceptibility. Arthritis and Rheumatism. 60: 1250-4. PMID 19404952 DOI: 10.1002/art.24468  0.32
2008 de Bakker PI, Ferreira MA, Jia X, Neale BM, Raychaudhuri S, Voight BF. Practical aspects of imputation-driven meta-analysis of genome-wide association studies. Human Molecular Genetics. 17: R122-8. PMID 18852200 DOI: 10.1093/hmg/ddn288  0.88
2008 Raychaudhuri S, Remmers EF, Lee AT, Hackett R, Guiducci C, Burtt NP, Gianniny L, Korman BD, Padyukov L, Kurreeman FA, Chang M, Catanese JJ, Ding B, Wong S, van der Helm-van Mil AH, et al. Common variants at CD40 and other loci confer risk of rheumatoid arthritis. Nature Genetics. 40: 1216-23. PMID 18794853 DOI: 10.1038/ng.233  0.88
2003 Denko NC, Fontana LA, Hudson KM, Sutphin PD, Raychaudhuri S, Altman R, Giaccia AJ. Investigating hypoxic tumor physiology through gene expression patterns. Oncogene. 22: 5907-14. PMID 12947397 DOI: 10.1038/sj.onc.1206703  0.88
2003 Raychaudhuri S, Chang JT, Imam F, Altman RB. The computational analysis of scientific literature to define and recognize gene expression clusters. Nucleic Acids Research. 31: 4553-60. PMID 12888516 DOI: 10.1093/nar/gkg636  0.88
2003 Raychaudhuri S, Altman RB. A literature-based method for assessing the functional coherence of a gene group. Bioinformatics (Oxford, England). 19: 396-401. PMID 12584126 DOI: 10.1093/bioinformatics/btg002  0.88
2003 Le QT, Sutphin PD, Raychaudhuri S, Yu SC, Terris DJ, Lin HS, Lum B, Pinto HA, Koong AC, Giaccia AJ. Identification of osteopontin as a prognostic plasma marker for head and neck squamous cell carcinomas. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 9: 59-67. PMID 12538452  0.64
2002 Raychaudhuri S, Schütze H, Altman RB. Using text analysis to identify functionally coherent gene groups. Genome Research. 12: 1582-90. PMID 12368251 DOI: 10.1101/gr.116402  0.88
2002 Kivi M, Liu X, Raychaudhuri S, Altman RB, Small PM. Determining the genomic locations of repetitive DNA sequences with a whole-genome microarray: IS6110 in Mycobacterium tuberculosis. Journal of Clinical Microbiology. 40: 2192-8. PMID 12037086  0.88
2002 Raychaudhuri S, Chang JT, Sutphin PD, Altman RB. Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature. Genome Research. 12: 203-14. PMID 11779846 DOI: 10.1101/gr.199701  0.88
2001 Altman RB, Raychaudhuri S. Whole-genome expression analysis: challenges beyond clustering. Current Opinion in Structural Biology. 11: 340-7. PMID 11406385 DOI: 10.1016/S0959-440X(00)00212-8  0.88
2001 Raychaudhuri S, Sutphin PD, Chang JT, Altman RB. Basic microarray analysis: grouping and feature reduction. Trends in Biotechnology. 19: 189-93. PMID 11301132 DOI: 10.1016/S0167-7799(01)01599-2  0.88
2001 Chang JT, Raychaudhuri S, Altman RB. Including biological literature improves homology search. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 374-83. PMID 11262956  0.88
2000 Raychaudhuri S, Stuart JM, Liu X, Small PM, Altman RB. Pattern recognition of genomic features with microarrays: site typing of Mycobacterium tuberculosis strains. Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 8: 286-95. PMID 10977090  0.88
2000 Raychaudhuri S, Stuart JM, Altman RB. Principal components analysis to summarize microarray experiments: application to sporulation time series. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 455-66. PMID 10902193  0.88
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