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Jessica L. Metcalf - Publications

Affiliations: 
University of Colorado, Boulder, Boulder, CO, United States 
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Burcham ZM, Garneau NL, Comstock SS, Tucker RM, Knight R, Metcalf JL. Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study. Scientific Reports. 10: 2133. PMID 32034250 DOI: 10.1038/S41598-020-59016-0  0.345
2020 Song SJ, Sanders JG, Delsuc F, Metcalf J, Amato K, Taylor MW, Mazel F, Lutz HL, Winker K, Graves GR, Humphrey G, Gilbert JA, Hackett SJ, White KP, Skeen HR, et al. Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. Mbio. 11. PMID 31911491 DOI: 10.1128/Mbio.02901-19  0.353
2019 Amato KR, Mallott EK, McDonald D, Dominy NJ, Goldberg T, Lambert JE, Swedell L, Metcalf JL, Gomez A, Britton GAO, Stumpf RM, Leigh SR, Knight R. Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny. Genome Biology. 20: 201. PMID 31590679 DOI: 10.1186/S13059-019-1807-Z  0.339
2019 Weinroth MD, Martin JN, Doster E, Geornaras I, Parker JK, Carlson CR, Metcalf JL, Morley PS, Belk KE. Investigation of tylosin in feed of feedlot cattle and effects on liver abscess prevalence, and fecal and soil microbiomes and resistomes. Journal of Animal Science. PMID 31563955 DOI: 10.1093/Jas/Skz306  0.316
2019 Weinroth MD, Britton BC, McCullough KR, Martin JN, Geornaras I, Knight R, Belk KE, Metcalf JL. Ground beef microbiome changes with antimicrobial decontamination interventions and product storage. Plos One. 14: e0217947. PMID 31166992 DOI: 10.1371/Journal.Pone.0217947  0.317
2019 Song SJ, Sanders JG, Baldassarre DT, Chaves JA, Johnson NS, Piaggio AJ, Stuckey MJ, Nováková E, Metcalf JL, Chomel BB, Aguilar-Setién A, Knight R, McKenzie VJ. Is there convergence of gut microbes in blood-feeding vertebrates? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180249. PMID 31154984 DOI: 10.1098/Rstb.2018.0249  0.379
2019 Kunz IGZ, Reed KJ, Metcalf JL, Hassel DM, Coleman RJ, Hess TM, Coleman SJ. Equine Fecal Microbiota Changes Associated With Anthelmintic Administration. Journal of Equine Veterinary Science. 77: 98-106. PMID 31133326 DOI: 10.1016/J.Jevs.2019.01.018  0.318
2018 Metcalf JL. Estimating the postmortem interval using microbes: Knowledge gaps and a path to technology adoption. Forensic Science International. Genetics. 38: 211-218. PMID 30448529 DOI: 10.1016/J.Fsigen.2018.11.004  0.317
2018 Amato KR, G Sanders J, Song SJ, Nute M, Metcalf JL, Thompson LR, Morton JT, Amir A, J McKenzie V, Humphrey G, Gogul G, Gaffney J, L Baden A, A O Britton G, P Cuozzo F, et al. Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes. The Isme Journal. PMID 29995839 DOI: 10.1038/S41396-018-0175-0  0.346
2018 Belk A, Xu ZZ, Carter DO, Lynne A, Bucheli S, Knight R, Metcalf JL. Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models. Genes. 9. PMID 29462950 DOI: 10.3390/Genes9020104  0.354
2018 Boast AP, Weyrich LS, Wood JR, Metcalf JL, Knight R, Cooper A. Coprolites reveal ecological interactions lost with the extinction of New Zealand birds. Proceedings of the National Academy of Sciences of the United States of America. PMID 29440415 DOI: 10.1073/Pnas.1712337115  0.383
2018 Belk AD, Deel HL, Burcham ZM, Knight R, Carter DO, Metcalf JL. Animal models for understanding microbial decomposition of human remains Drug Discovery Today: Disease Models. 28: 117-125. DOI: 10.1016/J.Ddmod.2019.08.013  0.35
2017 Metcalf JL, Song SJ, Morton JT, Weiss S, Seguin-Orlando A, Joly F, Feh C, Taberlet P, Coissac E, Amir A, Willerslev E, Knight R, McKenzie V, Orlando L. Evaluating the impact of domestication and captivity on the horse gut microbiome. Scientific Reports. 7: 15497. PMID 29138485 DOI: 10.1038/S41598-017-15375-9  0.371
2017 Weinroth MD, Carlson CR, Martin JN, Metcalf JL, Morley PS, Belk KE. Rapid Communication: 16S ribosomal ribonucleic acid characterization of liver abscesses in feedlot cattle from three states in the United States. Journal of Animal Science. 95: 4520-4525. PMID 29108068 DOI: 10.2527/Jas2017.1743  0.329
2017 McKenzie VJ, Song SJ, Delsuc F, Prest TL, Oliverio AM, Korpita TM, Alexiev A, Amato KR, Metcalf JL, Kowalewski M, Avenant NL, Link A, Di Fiore A, Seguin-Orlando A, Feh C, et al. The Effects of Captivity on the Mammalian Gut Microbiome. Integrative and Comparative Biology. PMID 28985326 DOI: 10.1093/Icb/Icx090  0.385
2017 Metcalf JL, Xu ZZ, Bouslimani A, Dorrestein P, Carter DO, Knight R. Microbiome Tools for Forensic Science. Trends in Biotechnology. PMID 28366290 DOI: 10.1016/J.Tibtech.2017.03.006  0.32
2016 Metcalf JL, Turney C, Barnett R, Martin F, Bray SC, Vilstrup JT, Orlando L, Salas-Gismondi R, Loponte D, Medina M, De Nigris M, Civalero T, Fernández PM, Gasco A, Duran V, et al. Synergistic roles of climate warming and human occupation in Patagonian megafaunal extinctions during the Last Deglaciation. Science Advances. 2: e1501682. PMID 27386563 DOI: 10.1126/Sciadv.1501682  0.333
2016 Amato KR, Metcalf JL, Song SJ, Hale VL, Clayton J, Ackermann G, Humphrey G, Niu K, Cui D, Zhao H, Schrenzel MD, Tan CL, Knight R, Braun J. Using the gut microbiota as a novel tool for examining colobine primate GI health Global Ecology and Conservation. 7: 225-237. DOI: 10.1016/J.Gecco.2016.06.004  0.352
2015 Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, et al. Microbial community assembly and metabolic function during mammalian corpse decomposition. Science (New York, N.Y.). PMID 26657285 DOI: 10.1126/Science.Aad2646  0.306
2015 Clemente JC, Pehrsson EC, Blaser MJ, Sandhu K, Gao Z, Wang B, Magris M, Hidalgo G, Contreras M, Noya-Alarcón Ó, Lander O, McDonald J, Cox M, Walter J, Oh PL, ... ... Metcalf J, et al. The microbiome of uncontacted Amerindians. Science Advances. 1. PMID 26229982 DOI: 10.1126/Sciadv.1500183  0.33
2015 Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, Clemente JC, Ursell LK, Zech Xu Z, Van Treuren W, Knight R, Gaffney PM, Spicer P, Lawson P, Marin-Reyes L, Trujillo-Villarroel O, Foster M, et al. Subsistence strategies in traditional societies distinguish gut microbiomes. Nature Communications. 6: 6505. PMID 25807110 DOI: 10.1038/Ncomms7505  0.348
2015 Carter DO, Metcalf JL, Bibat A, Knight R. Seasonal variation of postmortem microbial communities. Forensic Science, Medicine, and Pathology. 11: 202-7. PMID 25737335 DOI: 10.1007/S12024-015-9667-7  0.324
2015 Llamas B, Brotherton P, Mitchell KJ, Templeton JE, Thomson VA, Metcalf JL, Armstrong KN, Kasper M, Richards SM, Camens AB, Lee MS, Cooper A. Late pleistocene Australian marsupial DNA clarifies the affinities of extinct megafaunal kangaroos and wallabies. Molecular Biology and Evolution. 32: 574-84. PMID 25526902 DOI: 10.1093/Molbev/Msu338  0.354
2015 Love Stowell SM, Kennedy CM, Beals SC, Metcalf JL, Martin AP. The genetic legacy of more than a century of stocking trout: A case study in rocky mountain National park, Colorado, USA Canadian Journal of Fisheries and Aquatic Sciences. 72: 1565-1574. DOI: 10.1139/Cjfas-2015-0009  0.538
2014 Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, et al. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science (New York, N.Y.). 345: 1048-52. PMID 25170151 DOI: 10.1126/Science.1254529  0.329
2014 Metcalf JL, Ursell LK, Knight R. Ancient human oral plaque preserves a wealth of biological data. Nature Genetics. 46: 321-3. PMID 24675519 DOI: 10.1038/Ng.2930  0.33
2014 Metcalf JL, Prost S, Nogués-Bravo D, DeChaine EG, Anderson C, Batra P, Araújo MB, Cooper A, Guralnick RP. Integrating multiple lines of evidence into historical biogeography hypothesis testing: a Bison bison case study. Proceedings. Biological Sciences / the Royal Society. 281: 20132782. PMID 24403338 DOI: 10.1098/Rspb.2013.2782  0.68
2014 Delsuc F, Metcalf JL, Wegener Parfrey L, Song SJ, González A, Knight R. Convergence of gut microbiomes in myrmecophagous mammals. Molecular Ecology. 23: 1301-17. PMID 24118574 DOI: 10.1111/Mec.12501  0.362
2013 Metcalf JL, Wegener Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, Humphrey GC, Gebert MJ, Van Treuren W, Berg-Lyons D, Keepers K, Guo Y, Bullard J, Fierer N, Carter DO, et al. A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. Elife. 2: e01104. PMID 24137541 DOI: 10.7554/Elife.01104  0.305
2013 Ursell LK, Van Treuren W, Metcalf JL, Pirrung M, Gewirtz A, Knight R. Replenishing our defensive microbes. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 810-7. PMID 23836415 DOI: 10.1002/Bies.201300018  0.346
2013 McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-LoÅ¡o T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, ... ... Metcalf JL, et al. Animals in a bacterial world, a new imperative for the life sciences. Proceedings of the National Academy of Sciences of the United States of America. 110: 3229-36. PMID 23391737 DOI: 10.1073/Pnas.1218525110  0.337
2012 Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Reinhard K, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM. Insights from characterizing extinct human gut microbiomes. Plos One. 7: e51146. PMID 23251439 DOI: 10.1371/Journal.Pone.0051146  0.358
2012 Metcalf JL, Love Stowell S, Kennedy CM, Rogers KB, McDonald D, Epp J, Keepers K, Cooper A, Austin JJ, Martin AP. Historical stocking data and 19th century DNA reveal human-induced changes to native diversity and distribution of cutthroat trout. Molecular Ecology. 21: 5194-207. PMID 22998121 DOI: 10.1111/Mec.12028  0.555
2012 Ursell LK, Metcalf JL, Parfrey LW, Knight R. Defining the human microbiome. Nutrition Reviews. 70: S38-44. PMID 22861806 DOI: 10.1111/J.1753-4887.2012.00493.X  0.342
2012 Gonzalez A, King A, Robeson MS, Song S, Shade A, Metcalf JL, Knight R. Characterizing microbial communities through space and time. Current Opinion in Biotechnology. 23: 431-6. PMID 22154467 DOI: 10.1016/J.Copbio.2011.11.017  0.333
2012 Rawlence NJ, Metcalf JL, Wood JR, Worthy TH, Austin JJ, Cooper A. The effect of climate and environmental change on the megafaunal moa of New Zealand in the absence of humans Quaternary Science Reviews. 50: 141-153. DOI: 10.1016/J.Quascirev.2012.07.004  0.391
2011 Gonzalez A, Clemente JC, Shade A, Metcalf JL, Song S, Prithiviraj B, Palmer BE, Knight R. Our microbial selves: what ecology can teach us. Embo Reports. 12: 775-84. PMID 21720391 DOI: 10.1038/Embor.2011.137  0.37
2009 Orlando L, Metcalf JL, Alberdi MT, Telles-Antunes M, Bonjean D, Otte M, Martin F, Eisenmann V, Mashkour M, Morello F, Prado JL, Salas-Gismondi R, Shockey BJ, Wrinn PJ, Vasil'ev SK, et al. Revising the recent evolutionary history of equids using ancient DNA. Proceedings of the National Academy of Sciences of the United States of America. 106: 21754-9. PMID 20007379 DOI: 10.1073/Pnas.0903672106  0.38
2009 Pritchard VL, Metcalf JL, Jones K, Martin AP, Cowley DE. Population structure and genetic management of Rio Grande cutthroat trout (Oncorhynchus clarkii virginalis) Conservation Genetics. 10: 1209-1221. DOI: 10.1007/S10592-008-9652-8  0.5
2008 Metcalf JL, Siegle MR, Martin AP. Hybridization dynamics between Colorado's native cutthroat trout and introduced rainbow trout. The Journal of Heredity. 99: 149-56. PMID 18238784 DOI: 10.1093/Jhered/Esm118  0.519
2007 Metcalf JL, Pritchard VL, Silvestri SM, Jenkins JB, Wood JS, Cowley DE, Evans RP, Shiozawa DK, Martin AP. Across the great divide: genetic forensics reveals misidentification of endangered cutthroat trout populations. Molecular Ecology. 16: 4445-54. PMID 17727621 DOI: 10.1111/J.1365-294X.2007.03472.X  0.523
2007 Pritchard VL, Jones K, Metcalf JL, Martin AP, Wilkinson P, Cowley DE. Characterization of tetranucleotide microsatellites for Rio Grande cutthroat trout and rainbow trout, and their cross-amplification in other cutthroat trout subspecies Molecular Ecology Notes. 7: 594-596. DOI: 10.1111/J.1471-8286.2007.01695.X  0.456
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