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Andrea J. Berman, Ph.D. - Publications

Affiliations: 
2012- Biological Sciences University of Pittsburgh, Pittsburgh, PA, United States 
Area:
Biochemistry, structural chemistry
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Nguyen E, Sosa JA, Cassidy KC, Berman AJ. Comparative analysis of the LARP1 C-terminal DM15 region through Coelomate evolution. Plos One. 19: e0308574. PMID 39190712 DOI: 10.1371/journal.pone.0308574  0.671
2021 Jia JJ, Lahr RM, Solgaard MT, Moraes BJ, Pointet R, Yang AD, Celucci G, Graber TE, Hoang HD, Niklaus MR, Pena IA, Hollensen AK, Smith EM, Chaker-Margot M, Anton L, ... ... Berman AJ, et al. mTORC1 promotes TOP mRNA translation through site-specific phosphorylation of LARP1. Nucleic Acids Research. PMID 33398329 DOI: 10.1093/nar/gkaa1239  0.421
2020 Eozenou C, Gonen N, Touzon MS, Jorgensen A, Yatsenko SA, Fusee L, Kamel AK, Gellen B, Guercio G, Singh P, Witchel S, Berman AJ, Mainpal R, Totonchi M, Mohseni Meybodi A, et al. Testis formation in XX individuals resulting from novel pathogenic variants in Wilms' tumor 1 () gene. Proceedings of the National Academy of Sciences of the United States of America. PMID 32493750 DOI: 10.1073/Pnas.1921676117  0.31
2020 Berman AJ, Thoreen CC, Dedeic Z, Chettle J, Roux PP, Sarah BP. Controversies around the function of LARP1. Rna Biology. 1-11. PMID 32233986 DOI: 10.1080/15476286.2020.1733787  0.493
2020 Cassidy KC, Kaminsky JC, Berman AJ, Durrant JD. Secondary-Structure Changes Impact LARP1/mRNA Binding: Simulations and Experiments Suggest New Avenues for Anti-Cancer Drug Discovery Biophysical Journal. 118: 297a. DOI: 10.1016/J.Bpj.2019.11.1685  0.573
2019 Cassidy KC, Lahr RM, Kaminsky JC, Mack S, Fonseca BD, Das SR, Berman AJ, Durrant JD. Capturing the Mechanism Underlying TOP mRNA Binding to LARP1. Structure (London, England : 1993). PMID 31676287 DOI: 10.1016/J.Str.2019.10.006  0.632
2019 Al-Ashtal HA, Rubottom CM, Leeper TC, Berman AJ. The LARP1 La-Module recognizes both ends of TOP mRNAs. Rna Biology. 1-11. PMID 31601159 DOI: 10.1080/15476286.2019.1669404  0.539
2019 Cassidy KC, Lahr RM, Kaminsky JC, Berman AJ, Durrant JD. Capturing the Mechanism Underlying Top-Binding to the LARP1 DM15 Region Biophysical Journal. 116: 434a. DOI: 10.1016/J.Bpj.2018.11.2337  0.61
2018 Amatya N, Childs EE, Cruz JA, Aggor FEY, Garg AV, Berman AJ, Gudjonsson JE, Atasoy U, Gaffen SL. IL-17 integrates multiple self-reinforcing, feed-forward mechanisms through the RNA binding protein Arid5a. Science Signaling. 11. PMID 30301788 DOI: 10.1126/Scisignal.Aat4617  0.378
2018 Zamora PF, Hu L, Knowlton JJ, Lahr RM, Moreno RA, Berman AJ, Prasad BVV, Dermody TS. Reovirus Nonstructural Protein σNS Acts as an RNA-Stability Factor Promoting Viral Genome Replication. Journal of Virology. PMID 29769334 DOI: 10.1128/Jvi.00563-18  0.401
2018 Fonseca BD, Lahr RM, Damgaard CK, Alain T, Berman AJ. LARP1 on TOP of ribosome production. Wiley Interdisciplinary Reviews. Rna. e1480. PMID 29722158 DOI: 10.1002/Wrna.1480  0.503
2017 Lahr RM, Fonseca BD, Ciotti GE, Al-Ashtal HA, Jia JJ, Niklaus MR, Blagden SP, Allain T, Berman AJ. La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs. Elife. 6. PMID 28379136 DOI: 10.7554/Elife.24146  0.576
2017 Lahr RM, Fonseca BD, Ciotti GE, Al-Ashtal HA, Jia J, Niklaus MR, Blagden SP, Alain T, Berman AJ. Author response: La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs Elife. DOI: 10.7554/Elife.24146.025  0.454
2015 Hopkins TG, Mura M, Al-Ashtal HA, Lahr RM, Abd-Latip N, Sweeney K, Lu H, Weir J, El-Bahrawy M, Steel JH, Ghaem-Maghami S, Aboagye EO, Berman AJ, Blagden SP. The RNA-binding protein LARP1 is a post-transcriptional regulator of survival and tumorigenesis in ovarian cancer. Nucleic Acids Research. PMID 26717985 DOI: 10.1093/Nar/Gkv1515  0.405
2015 Lahr RM, Mack SM, Héroux A, Blagden SP, Bousquet-Antonelli C, Deragon JM, Berman AJ. The La-related protein 1-specific domain repurposes HEAT-like repeats to directly bind a 5'TOP sequence. Nucleic Acids Research. PMID 26206669 DOI: 10.1093/Nar/Gkv748  0.557
2012 Berman AJ, Cech TR. SnapShot: telomeres and telomerase. Cell. 151: 1138-1138.e1. PMID 23178129 DOI: 10.1016/J.Cell.2012.11.008  0.45
2011 Berman AJ, Akiyama BM, Stone MD, Cech TR. The RNA accordion model for template positioning by telomerase RNA during telomeric DNA synthesis. Nature Structural & Molecular Biology. 18: 1371-5. PMID 22101935 DOI: 10.1038/Nsmb.2174  0.583
2010 Berman AJ, Gooding AR, Cech TR. Tetrahymena telomerase protein p65 induces conformational changes throughout telomerase RNA (TER) and rescues telomerase reverse transcriptase and TER assembly mutants. Molecular and Cellular Biology. 30: 4965-76. PMID 20713447 DOI: 10.1128/Mcb.00827-10  0.519
2007 Berman AJ, Kamtekar S, Goodman JL, Lázaro JM, de Vega M, Blanco L, Salas M, Steitz TA. Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases. The Embo Journal. 26: 3494-505. PMID 17611604 DOI: 10.1038/Sj.Emboj.7601780  0.549
2006 Kamtekar S, Berman AJ, Wang J, Lázaro JM, de Vega M, Blanco L, Salas M, Steitz TA. The phi29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition. The Embo Journal. 25: 1335-43. PMID 16511564 DOI: 10.1038/Sj.Emboj.7601027  0.599
2006 Eakin CM, Berman AJ, Miranker AD. A native to amyloidogenic transition regulated by a backbone trigger. Nature Structural & Molecular Biology. 13: 202-8. PMID 16491088 DOI: 10.1038/Nsmb1068  0.302
2005 Rodríguez I, Lázaro JM, Blanco L, Kamtekar S, Berman AJ, Wang J, Steitz TA, Salas M, de Vega M. A specific subdomain in phi29 DNA polymerase confers both processivity and strand-displacement capacity. Proceedings of the National Academy of Sciences of the United States of America. 102: 6407-12. PMID 15845765 DOI: 10.1073/Pnas.0500597102  0.555
2005 Wang J, Kamtekar S, Berman AJ, Steitz TA. Correction of X-ray intensities from single crystals containing lattice-translocation defects. Acta Crystallographica. Section D, Biological Crystallography. 61: 67-74. PMID 15608377 DOI: 10.1107/S0907444904026721  0.485
2004 Kamtekar S, Berman AJ, Wang J, Lázaro JM, de Vega M, Blanco L, Salas M, Steitz TA. Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29. Molecular Cell. 16: 609-18. PMID 15546620 DOI: 10.1016/J.Molcel.2004.10.019  0.568
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