| Year |
Citation |
Score |
| 2025 |
Krishnaswamy S, Givechian K, Rocha J, Yang E, Liu C, Greene K, Ying R, Caron E, Iwasaki A. ImmunoStruct: a multimodal neural network framework for immunogenicity prediction from peptide-MHC sequence, structure, and biochemical properties. Research Square. PMID 40470208 DOI: 10.21203/rs.3.rs-6606336/v1 |
0.325 |
|
| 2024 |
Kovalchik KA, Hamelin DJ, Kubiniok P, Bourdin B, Mostefai F, Poujol R, Paré B, Simpson SM, Sidney J, Bonneil É, Courcelles M, Saini SK, Shahbazy M, Kapoor S, Rajesh V, ... ... Caron E, et al. Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines. Nature Communications. 15: 10316. PMID 39609459 DOI: 10.1038/s41467-024-54734-9 |
0.647 |
|
| 2024 |
Weitzen M, Shahbazy M, Kapoor S, Caron E. Deciphering the HLA-E immunopeptidome with mass spectrometry: an opportunity for universal mRNA vaccines and T-cell-directed immunotherapies. Frontiers in Immunology. 15: 1442783. PMID 39301027 DOI: 10.3389/fimmu.2024.1442783 |
0.36 |
|
| 2023 |
Huang X, Gan Z, Cui H, Lan T, Liu Y, Caron E, Shao W. The SysteMHC Atlas v2.0, an updated resource for mass spectrometry-based immunopeptidomics. Nucleic Acids Research. PMID 38000392 DOI: 10.1093/nar/gkad1068 |
0.365 |
|
| 2023 |
Stutzmann C, Peng J, Wu Z, Savoie C, Sirois I, Thibault P, Wheeler AR, Caron E. Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery. Cell Reports Methods. 3: 100511. PMID 37426761 DOI: 10.1016/j.crmeth.2023.100511 |
0.508 |
|
| 2022 |
Kovalchik K, Hamelin D, Caron E. Generation of HLA Allele-Specific Spectral Libraries to Identify and Quantify Immunopeptidomes by SWATH/DIA-MS. Methods in Molecular Biology (Clifton, N.J.). 2420: 137-147. PMID 34905171 DOI: 10.1007/978-1-0716-1936-0_11 |
0.399 |
|
| 2021 |
Kovalchik KA, Ma Q, Wessling L, Saab F, Despault J, Kubiniok P, Hamelin DJ, Faridi P, Li C, Purcell AW, Jang A, Paramithiotis E, Tognetti M, Reiter L, Bruderer R, ... ... Caron E, et al. MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Data Sets. Molecular & Cellular Proteomics : McP. 100178. PMID 34798331 DOI: 10.1016/j.mcpro.2021.100178 |
0.678 |
|
| 2021 |
Saab F, Hamelin DJ, Ma Q, Kovalchik KA, Sirois I, Faridi P, Li C, Purcell AW, Kubiniok P, Caron E. RHybridFinder: An R package to process immunopeptidomic data for putative hybrid peptide discovery. Star Protocols. 2: 100875. PMID 34746858 DOI: 10.1016/j.xpro.2021.100875 |
0.35 |
|
| 2021 |
Sirois I, Isabelle M, Duquette JD, Saab F, Caron E. Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis. Journal of Visualized Experiments : Jove. PMID 34723952 DOI: 10.3791/63052 |
0.408 |
|
| 2020 |
Shao W, Caron E, Pedrioli P, Aebersold R. The SysteMHC Atlas: a Computational Pipeline, a Website, and a Data Repository for Immunopeptidomic Analyses. Methods in Molecular Biology (Clifton, N.J.). 2120: 173-181. PMID 32124319 DOI: 10.1007/978-1-0716-0327-7_12 |
0.328 |
|
| 2019 |
Vizcaíno JA, Kubiniok P, Kovalchik K, Ma Q, Duquette JD, Mongrain I, Deutsch EW, Peters B, Sette A, Sirois I, Caron E. The Human Immunopeptidome Project: a roadmap to predict and treat immune diseases. Molecular & Cellular Proteomics : McP. PMID 31744855 DOI: 10.1074/Mcp.R119.001743 |
0.396 |
|
| 2018 |
Schuster H, Shao W, Weiss T, Pedrioli PGA, Roth P, Weller M, Campbell DS, Deutsch EW, Moritz RL, Planz O, Rammensee HG, Aebersold R, Caron E. A tissue-based draft map of the murine MHC class I immunopeptidome. Scientific Data. 5: 180157. PMID 30084848 DOI: 10.1038/Sdata.2018.157 |
0.469 |
|
| 2017 |
Shao W, Pedrioli PGA, Wolski W, Scurtescu C, Schmid E, Vizcaíno JA, Courcelles M, Schuster H, Kowalewski D, Marino F, Arlehamn CSL, Vaughan K, Peters B, Sette A, Ottenhoff THM, ... ... Caron E, et al. The SysteMHC Atlas project. Nucleic Acids Research. PMID 28985418 DOI: 10.1093/Nar/Gkx664 |
0.705 |
|
| 2017 |
Caron E, Aebersold R, Banaei-Esfahani A, Chong C, Bassani-Sternberg M. A Case for a Human Immuno-Peptidome Project Consortium. Immunity. 47: 203-208. PMID 28813649 DOI: 10.1016/J.Immuni.2017.07.010 |
0.338 |
|
| 2017 |
Vaughan K, Xu X, Caron E, Peters B, Sette A. Deciphering the MHC-associated peptidome: a review of naturally processed ligand data. Expert Review of Proteomics. PMID 28756714 DOI: 10.1080/14789450.2017.1361825 |
0.386 |
|
| 2017 |
Caron E, Roncagalli R, Hase T, Wolski WE, Choi M, Menoita MG, Durand S, García-Blesa A, Fierro-Monti I, Sajic T, Heusel M, Weiss T, Malissen M, Schlapbach R, Collins BC, et al. Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry. Cell Reports. 18: 3219-3226. PMID 28355572 DOI: 10.1016/J.Celrep.2017.03.019 |
0.318 |
|
| 2016 |
Faridi P, Aebersold R, Caron E. A first dataset toward a standardized community-driven global mapping of the human immunopeptidome. Data in Brief. 7: 201-5. PMID 26958639 DOI: 10.1016/J.Dib.2016.02.016 |
0.466 |
|
| 2015 |
Caron E, Kowalewski DJ, Chiek Koh C, Sturm T, Schuster H, Aebersold R. Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry. Molecular & Cellular Proteomics : McP. 14: 3105-17. PMID 26628741 DOI: 10.1074/Mcp.O115.052431 |
0.473 |
|
| 2014 |
Rosenberger G, Koh CC, Guo T, Röst HL, Kouvonen P, Collins BC, Heusel M, Liu Y, Caron E, Vichalkovski A, Faini M, Schubert OT, Faridi P, Ebhardt HA, Matondo M, et al. A repository of assays to quantify 10,000 human proteins by SWATH-MS. Scientific Data. 1: 140031. PMID 25977788 DOI: 10.1038/Sdata.2014.31 |
0.338 |
|
| 2014 |
Gubin MM, Zhang X, Schuster H, Caron E, Ward JP, Noguchi T, Ivanova Y, Hundal J, Arthur CD, Krebber WJ, Mulder GE, Toebes M, Vesely MD, Lam SS, Korman AJ, et al. Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens. Nature. 515: 577-81. PMID 25428507 DOI: 10.1038/Nature13988 |
0.342 |
|
| 2011 |
Caron E, Vincent K, Fortier MH, Laverdure JP, Bramoullé A, Hardy MP, Voisin G, Roux PP, Lemieux S, Thibault P, Perreault C. The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation. Molecular Systems Biology. 7: 533. PMID 21952136 DOI: 10.1038/Msb.2011.68 |
0.546 |
|
| 2010 |
de Verteuil D, Muratore-Schroeder TL, Granados DP, Fortier MH, Hardy MP, Bramoullé A, Caron E, Vincent K, Mader S, Lemieux S, Thibault P, Perreault C. Deletion of immunoproteasome subunits imprints on the transcriptome and has a broad impact on peptides presented by major histocompatibility complex I molecules. Molecular & Cellular Proteomics : McP. 9: 2034-47. PMID 20484733 DOI: 10.1074/Mcp.M900566-Mcp200 |
0.571 |
|
| 2009 |
Granados DP, Tanguay PL, Hardy MP, Caron E, de Verteuil D, Meloche S, Perreault C. ER stress affects processing of MHC class I-associated peptides. Bmc Immunology. 10: 10. PMID 19220912 DOI: 10.1186/1471-2172-10-10 |
0.416 |
|
| 2008 |
Fortier MH, Caron E, Hardy MP, Voisin G, Lemieux S, Perreault C, Thibault P. The MHC class I peptide repertoire is molded by the transcriptome. The Journal of Experimental Medicine. 205: 595-610. PMID 18299400 DOI: 10.1084/Jem.20071985 |
0.592 |
|
| 2007 |
Fortier M, Caron E, De Verteuil D, Perreault C, Thibault P. Influence of mTOR Signalling Pathway on the MHC I Immunopeptidome. Blood. 110: 3887-3887. DOI: 10.1182/Blood.V110.11.3887.3887 |
0.598 |
|
| 2007 |
Fortier M, Caron E, Hardy M, Voisin G, Lemieux S, Perreault C, Thibault P. The MHC I Immunopeptidome Is Moulded by the Transcriptome and Conceals a Tissue-Specific Signature. Blood. 110: 1327-1327. DOI: 10.1182/Blood.V110.11.1327.1327 |
0.596 |
|
| 2005 |
Caron E, Charbonneau R, Huppé G, Brochu S, Perreault C. The structure and location of SIMP/STT3B account for its prominent imprint on the MHC I immunopeptidome. International Immunology. 17: 1583-96. PMID 16263756 DOI: 10.1093/Intimm/Dxh336 |
0.44 |
|
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