| Year |
Citation |
Score |
| 2015 |
Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD. History of the ribosome and the origin of translation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621738 DOI: 10.1073/Pnas.1509761112 |
0.381 |
|
| 2015 |
Garmann RF, Gopal A, Athavale SS, Knobler CM, Gelbart WM, Harvey SC. Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy. Rna (New York, N.Y.). 21: 877-86. PMID 25752599 DOI: 10.1261/Rna.047506.114 |
0.422 |
|
| 2014 |
Bernier CR, Petrov AS, Waterbury CC, Jett J, Li F, Freil LE, Xiong X, Wang L, Migliozzi BL, Hershkovits E, Xue Y, Hsiao C, Bowman JC, Harvey SC, Grover MA, et al. RiboVision suite for visualization and analysis of ribosomes. Faraday Discussions. 169: 195-207. PMID 25340471 DOI: 10.1039/C3Fd00126A |
0.34 |
|
| 2014 |
Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, Williams LD. Evolution of the ribosome at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 10251-6. PMID 24982194 DOI: 10.1073/Pnas.1407205111 |
0.401 |
|
| 2014 |
Petrov AS, Bernier CR, Gulen B, Waterbury CC, Hershkovits E, Hsiao C, Harvey SC, Hud NV, Fox GE, Wartell RM, Williams LD. Secondary structures of rRNAs from all three domains of life. Plos One. 9: e88222. PMID 24505437 DOI: 10.1371/Journal.Pone.0088222 |
0.393 |
|
| 2014 |
Harvey SC. Comment on the letter by A. Ben-Shaul: "entropy, energy, and bending of DNA in viral capsids". Biophysical Journal. 106: 489-92. PMID 24461024 DOI: 10.1016/J.Bpj.2013.12.012 |
0.336 |
|
| 2013 |
Rahman KS, Cui G, Harvey SC, McCarty NA. Modeling the conformational changes underlying channel opening in CFTR. Plos One. 8: e74574. PMID 24086355 DOI: 10.1371/Journal.Pone.0074574 |
0.336 |
|
| 2013 |
Harvey SC, Zeng Y, Heitsch CE. The icosahedral RNA virus as a grotto: organizing the genome into stalagmites and stalactites. Journal of Biological Physics. 39: 163-72. PMID 23860866 DOI: 10.1007/S10867-013-9312-1 |
0.424 |
|
| 2013 |
Petrov AS, Bernier CR, Hershkovits E, Xue Y, Waterbury CC, Hsiao C, Stepanov VG, Gaucher EA, Grover MA, Harvey SC, Hud NV, Wartell RM, Fox GE, Williams LD. Secondary structure and domain architecture of the 23S and 5S rRNAs. Nucleic Acids Research. 41: 7522-35. PMID 23771137 DOI: 10.1093/Nar/Gkt513 |
0.362 |
|
| 2013 |
Hsiao C, Chou IC, Okafor CD, Bowman JC, O'Neill EB, Athavale SS, Petrov AS, Hud NV, Wartell RM, Harvey SC, Williams LD. RNA with iron(II) as a cofactor catalyses electron transfer. Nature Chemistry. 5: 525-8. PMID 23695635 DOI: 10.1038/Nchem.1649 |
0.331 |
|
| 2013 |
Hsiao C, Lenz TK, Peters JK, Fang PY, Schneider DM, Anderson EJ, Preeprem T, Bowman JC, O'Neill EB, Lie L, Athavale SS, Gossett JJ, Trippe C, Murray J, Petrov AS, ... ... Harvey SC, et al. Molecular paleontology: a biochemical model of the ancestral ribosome. Nucleic Acids Research. 41: 3373-85. PMID 23355613 DOI: 10.1093/Nar/Gkt023 |
0.422 |
|
| 2013 |
Athavale SS, Gossett JJ, Bowman JC, Hud NV, Williams LD, Harvey SC. In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus. Plos One. 8: e54384. PMID 23349871 DOI: 10.1371/Journal.Pone.0054384 |
0.425 |
|
| 2013 |
Rahman KS, Cui G, McCarty NA, Harvey SC. Molecular Dynamics Simulations of CFTR Gating and Conductance Biophysical Journal. 104: 624a-625a. DOI: 10.1016/J.Bpj.2012.11.3457 |
0.362 |
|
| 2013 |
Harvey SC, Athavale S, Jared Gossett J, Zeng Y. The Role of RNA Secondary Structure in Viral Assembly Biophysical Journal. 104: 414a. DOI: 10.1016/J.Bpj.2012.11.2308 |
0.405 |
|
| 2012 |
Zeng Y, Larson SB, Heitsch CE, McPherson A, Harvey SC. A model for the structure of satellite tobacco mosaic virus. Journal of Structural Biology. 180: 110-6. PMID 22750417 DOI: 10.1016/J.Jsb.2012.06.008 |
0.441 |
|
| 2012 |
Swenson MS, Anderson J, Ash A, Gaurav P, Sükösd Z, Bader DA, Harvey SC, Heitsch CE. GTfold: enabling parallel RNA secondary structure prediction on multi-core desktops. Bmc Research Notes. 5: 341. PMID 22747589 DOI: 10.1186/1756-0500-5-341 |
0.375 |
|
| 2012 |
Petrov AS, Bernier CR, Hsiao C, Okafor CD, Tannenbaum E, Stern J, Gaucher E, Schneider D, Hud NV, Harvey SC, Williams LD. RNA-magnesium-protein interactions in large ribosomal subunit. The Journal of Physical Chemistry. B. 116: 8113-20. PMID 22712611 DOI: 10.1021/Jp304723W |
0.372 |
|
| 2012 |
Athavale SS, Petrov AS, Hsiao C, Watkins D, Prickett CD, Gossett JJ, Lie L, Bowman JC, O'Neill E, Bernier CR, Hud NV, Wartell RM, Harvey SC, Williams LD. RNA folding and catalysis mediated by iron (II). Plos One. 7: e38024. PMID 22701543 DOI: 10.1371/Journal.Pone.0038024 |
0.342 |
|
| 2012 |
Athavale SS, Gossett JJ, Hsiao C, Bowman JC, O'Neill E, Hershkovitz E, Preeprem T, Hud NV, Wartell RM, Harvey SC, Williams LD. Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state. Rna (New York, N.Y.). 18: 752-8. PMID 22334759 DOI: 10.1261/Rna.030692.111 |
0.329 |
|
| 2012 |
Shefaet Rahman K, Cui G, McCarty NA, Harvey SC. A Homology-Based Molecular Model of the Closed State of Human CFTR Biophysical Journal. 102: 547a. DOI: 10.1016/J.Bpj.2011.11.2985 |
0.334 |
|
| 2011 |
Chen W, Lou J, Hsin J, Schulten K, Harvey SC, Zhu C. Molecular dynamics simulations of forced unbending of integrin α(v)β₃. Plos Computational Biology. 7: e1001086. PMID 21379327 DOI: 10.1371/Journal.Pcbi.1001086 |
0.33 |
|
| 2011 |
Harvey SC, Petrov AS, Devkota B, Boz MB. Computational approaches to modeling viral structure and assembly. Methods in Enzymology. 487: 513-43. PMID 21187237 DOI: 10.1016/B978-0-12-381270-4.00018-4 |
0.787 |
|
| 2011 |
Petrov AS, Bowman JC, Harvey SC, Williams LD. Bidentate RNA-magnesium clamps: on the origin of the special role of magnesium in RNA folding. Rna (New York, N.Y.). 17: 291-7. PMID 21173199 DOI: 10.1261/Rna.2390311 |
0.394 |
|
| 2011 |
Petrov AS, Harvey SC. Role of DNA-DNA interactions on the structure and thermodynamics of bacteriophages Lambda and P4. Journal of Structural Biology. 174: 137-46. PMID 21074621 DOI: 10.1016/J.Jsb.2010.11.007 |
0.316 |
|
| 2011 |
Boz MB, Preeprem T, Harvey SC. Assembly of an Unenveloped Icosahedral RNA Viruses using Coarse-Grained Models Biophysical Journal. 100: 402a. DOI: 10.1016/J.Bpj.2010.12.2387 |
0.789 |
|
| 2009 |
Harvey SC, Petrov AS, Devkota B, Boz MB. Viral assembly: a molecular modeling perspective. Physical Chemistry Chemical Physics : Pccp. 11: 10553-64. PMID 20145801 DOI: 10.1039/B912884K |
0.786 |
|
| 2009 |
Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E, Sali A, Harvey SC, Frank J. Comprehensive molecular structure of the eukaryotic ribosome. Structure (London, England : 1993). 17: 1591-604. PMID 20004163 DOI: 10.1016/J.Str.2009.09.015 |
0.734 |
|
| 2009 |
Petrov AS, Locker CR, Harvey SC. Characterization of DNA conformation inside bacterial viruses. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 021914. PMID 19792158 DOI: 10.1103/Physreve.80.021914 |
0.315 |
|
| 2009 |
Devkota B, Petrov AS, Lemieux S, Boz MB, Tang L, Schneemann A, Johnson JE, Harvey SC. Structural and electrostatic characterization of pariacoto virus: implications for viral assembly. Biopolymers. 91: 530-8. PMID 19226622 DOI: 10.1002/Bip.21168 |
0.806 |
|
| 2009 |
Petrov AS, Sarkar T, Hud NV, Harvey SC. Modeling DNA Condensation Phenomena by Coarse-Gained Models: Biophysical Journal. 96: 422a. DOI: 10.1016/J.Bpj.2008.12.2160 |
0.342 |
|
| 2009 |
Boz MB, Harvey SC. Capsid Assembly in Small, Unenveloped Icosahedral DNA and RNA Viruses Biophysical Journal. 96: 419a. DOI: 10.1016/J.Bpj.2008.12.2144 |
0.778 |
|
| 2008 |
Tan RK, Devkota B, Harvey SC. YUP.SCX: coaxing atomic models into medium resolution electron density maps. Journal of Structural Biology. 163: 163-74. PMID 18572416 DOI: 10.1016/J.Jsb.2008.05.001 |
0.684 |
|
| 2008 |
Petrov AS, Harvey SC. Packaging double-helical DNA into viral capsids: structures, forces, and energetics. Biophysical Journal. 95: 497-502. PMID 18487310 DOI: 10.1529/Biophysj.108.131797 |
0.336 |
|
| 2008 |
Mears JA, Stagg SM, Harvey SC. Modeling Large RNA Assemblies using a Reduced Representation Handbook of Rna Biochemistry. 546-559. DOI: 10.1002/9783527619504.ch33 |
0.744 |
|
| 2007 |
Petrov AS, Boz MB, Harvey SC. The conformation of double-stranded DNA inside bacteriophages depends on capsid size and shape. Journal of Structural Biology. 160: 241-8. PMID 17919923 DOI: 10.1016/J.Jsb.2007.08.012 |
0.754 |
|
| 2007 |
Petrov AS, Lim-Hing K, Harvey SC. Packaging of DNA by bacteriophage epsilon15: structure, forces, and thermodynamics. Structure (London, England : 1993). 15: 807-12. PMID 17637341 DOI: 10.1016/J.Str.2007.05.005 |
0.342 |
|
| 2007 |
Locker CR, Fuller SD, Harvey SC. DNA organization and thermodynamics during viral packing. Biophysical Journal. 93: 2861-9. PMID 17573426 DOI: 10.1529/Biophysj.106.094771 |
0.317 |
|
| 2007 |
Petrov AS, Harvey SC. Structural and thermodynamic principles of viral packaging. Structure (London, England : 1993). 15: 21-7. PMID 17223529 DOI: 10.1016/J.Str.2006.11.013 |
0.337 |
|
| 2006 |
Tan RK, Petrov AS, Harvey SC. YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models. Journal of Chemical Theory and Computation. 2: 529-540. PMID 22844233 DOI: 10.1021/Ct050323R |
0.338 |
|
| 2006 |
Catte A, Patterson JC, Jones MK, Jerome WG, Bashtovyy D, Su Z, Gu F, Chen J, Aliste MP, Harvey SC, Li L, Weinstein G, Segrest JP. Novel changes in discoidal high density lipoprotein morphology: a molecular dynamics study. Biophysical Journal. 90: 4345-60. PMID 16581834 DOI: 10.1529/Biophysj.105.071456 |
0.323 |
|
| 2006 |
Mears JA, Sharma MR, Gutell RR, McCook AS, Richardson PE, Caulfield TR, Agrawal RK, Harvey SC. A structural model for the large subunit of the mammalian mitochondrial ribosome. Journal of Molecular Biology. 358: 193-212. PMID 16510155 DOI: 10.1016/J.Jmb.2006.01.094 |
0.793 |
|
| 2006 |
Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E. The RNA Ontology Consortium: an open invitation to the RNA community. Rna (New York, N.Y.). 12: 533-41. PMID 16484377 DOI: 10.1261/Rna.2343206 |
0.39 |
|
| 2006 |
Locker CR, Harvey SC. A model for viral genome packing Multiscale Modeling and Simulation. 5: 1264-1279. DOI: 10.1137/060650684 |
0.351 |
|
| 2006 |
Cui Q, Tan RKZ, Harvey SC, Case DA. Low-resolution molecular dynamics simulations of the 30S ribosomal subunit Multiscale Modeling and Simulation. 5: 1248-1263. DOI: 10.1137/05064850X |
0.437 |
|
| 2005 |
Stagg SM, Harvey SC. Exploring the flexibility of ribosome recycling factor using molecular dynamics. Biophysical Journal. 89: 2659-66. PMID 16055531 DOI: 10.1529/Biophysj.104.052373 |
0.648 |
|
| 2005 |
Richardson PE, Manchekar M, Dashti N, Jones MK, Beigneux A, Young SG, Harvey SC, Segrest JP. Assembly of lipoprotein particles containing apolipoprotein-B: structural model for the nascent lipoprotein particle. Biophysical Journal. 88: 2789-800. PMID 15653747 DOI: 10.1529/Biophysj.104.046235 |
0.551 |
|
| 2004 |
Li L, Chen J, Mishra VK, Kurtz JA, Cao D, Klon AE, Harvey SC, Anantharamaiah GM, Segrest JP. Double belt structure of discoidal high density lipoproteins: molecular basis for size heterogeneity. Journal of Molecular Biology. 343: 1293-311. PMID 15491614 DOI: 10.1016/J.Jmb.2004.09.017 |
0.727 |
|
| 2004 |
Tihova M, Dryden KA, Le TV, Harvey SC, Johnson JE, Yeager M, Schneemann A. Nodavirus coat protein imposes dodecahedral RNA structure independent of nucleotide sequence and length. Journal of Virology. 78: 2897-905. PMID 14990708 DOI: 10.1128/Jvi.78.6.2897-2905.2004 |
0.433 |
|
| 2004 |
LaMarque JC, Le TV, Harvey SC. Packaging double-helical DNA into viral capsids. Biopolymers. 73: 348-55. PMID 14755571 DOI: 10.1002/Bip.10529 |
0.371 |
|
| 2003 |
Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nature Structural Biology. 10: 899-906. PMID 14566331 DOI: 10.1038/Nsb1003 |
0.635 |
|
| 2003 |
Dupuy LC, Kelly NJ, Elgavish TE, Harvey SC, Morrow CD. Probing the importance of tRNA anticodon: human immunodeficiency virus type 1 (HIV-1) RNA genome complementarity with an HIV-1 that selects tRNA(Glu) for replication. Journal of Virology. 77: 8756-64. PMID 12885895 DOI: 10.1128/Jvi.77.16.8756-8764.2003 |
0.753 |
|
| 2003 |
Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J. Study of the structural dynamics of the E coli 70S ribosome using real-space refinement. Cell. 113: 789-801. PMID 12809609 DOI: 10.1016/S0092-8674(03)00427-6 |
0.646 |
|
| 2003 |
Stagg SM, Mears JA, Harvey SC. A structural model for the assembly of the 30S subunit of the ribosome. Journal of Molecular Biology. 328: 49-61. PMID 12683996 DOI: 10.1016/S0022-2836(03)00174-8 |
0.756 |
|
| 2003 |
Sheldahl C, Xing J, Dong WJ, Harvey SC, Cheung HC. The calcium-saturated cTnI/cTnC complex: structure of the inhibitory region of cTnI. Biophysical Journal. 84: 1057-64. PMID 12547787 DOI: 10.1016/S0006-3495(03)74922-4 |
0.749 |
|
| 2003 |
Harvey SC, Wang C, Teletchea S, Lavery R. Motifs in nucleic acids: molecular mechanics restraints for base pairing and base stacking. Journal of Computational Chemistry. 24: 1-9. PMID 12483670 DOI: 10.1002/Jcc.10173 |
0.365 |
|
| 2002 |
Arsuaga J, Tan RK, Vazquez M, Sumners DW, Harvey SC. Investigation of viral DNA packaging using molecular mechanics models. Biophysical Chemistry. 101: 475-84. PMID 12488021 DOI: 10.1016/S0301-4622(02)00197-7 |
0.346 |
|
| 2002 |
Klon AE, Segrest JP, Harvey SC. Molecular dynamics simulations on discoidal HDL particles suggest a mechanism for rotation in the apo A-I belt model. Journal of Molecular Biology. 324: 703-21. PMID 12460572 DOI: 10.1016/S0022-2836(02)01143-9 |
0.749 |
|
| 2002 |
Stagg SM, Valle M, Agrawal RK, Frank J, Harvey SC. Problems with the transorientation hypothesis. Rna (New York, N.Y.). 8: 1093-4. PMID 12358427 DOI: 10.1017/S1355838202027061 |
0.65 |
|
| 2002 |
Klon AE, Segrest JP, Harvey SC. Comparative models for human apolipoprotein A-I bound to lipid in discoidal high-density lipoprotein particles. Biochemistry. 41: 10895-905. PMID 12206659 DOI: 10.1021/Bi020315M |
0.726 |
|
| 2002 |
Mears JA, Cannone JJ, Stagg SM, Gutell RR, Agrawal RK, Harvey SC. Modeling a minimal ribosome based on comparative sequence analysis. Journal of Molecular Biology. 321: 215-34. PMID 12144780 DOI: 10.1016/S0022-2836(02)00568-5 |
0.768 |
|
| 2002 |
Waugh A, Gendron P, Altman R, Brown JW, Case D, Gautheret D, Harvey SC, Leontis N, Westbrook J, Westhof E, Zuker M, Major F. RNAML: a standard syntax for exchanging RNA information. Rna (New York, N.Y.). 8: 707-17. PMID 12088144 DOI: 10.1017/S1355838202028017 |
0.384 |
|
| 2002 |
Flood C, Gustafsson M, Richardson PE, Harvey SC, Segrest JP, Borén J. Identification of the proteoglycan binding site in apolipoprotein B48. The Journal of Biological Chemistry. 277: 32228-33. PMID 12070165 DOI: 10.1074/Jbc.M204053200 |
0.492 |
|
| 2001 |
Olson WK, Bansal M, Burley SK, Dickerson RE, Gerstein M, Harvey SC, Heinemann U, Lu XJ, Neidle S, Shakked Z, Sklenar H, Suzuki M, Tung CS, Westhof E, Wolberger C, et al. A standard reference frame for the description of nucleic acid base-pair geometry. Journal of Molecular Biology. 313: 229-37. PMID 11601858 DOI: 10.1006/Jmbi.2001.4987 |
0.329 |
|
| 2001 |
Elgavish T, Cannone JJ, Lee JC, Harvey SC, Gutell RR. AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices. Journal of Molecular Biology. 310: 735-53. PMID 11453684 DOI: 10.1006/Jmbi.2001.4807 |
0.779 |
|
| 2001 |
Stagg SM, Frazer-Abel AA, Hagerman PJ, Harvey SC. Structural studies of the tRNA domain of tmRNA. Journal of Molecular Biology. 309: 727-35. PMID 11397092 DOI: 10.1006/Jmbi.2001.4632 |
0.622 |
|
| 2000 |
Sardesai NY, Stagg SM, Vanloock MS, Harvey SC, Schimmel P. RNA scaffolds for minihelix-based aminoacyl transfer: design of "transpeptizymes". Journal of Biomolecular Structure & Dynamics. 17: 29-37. PMID 22607404 DOI: 10.1080/07391102.2000.10506601 |
0.797 |
|
| 2000 |
VanLoock MS, Agrawal RK, Gabashvili IS, Qi L, Frank J, Harvey SC. Movement of the decoding region of the 16 S ribosomal RNA accompanies tRNA translocation. Journal of Molecular Biology. 304: 507-15. PMID 11099376 DOI: 10.1006/Jmbi.2000.4213 |
0.738 |
|
| 2000 |
Klon AE, Jones MK, Segrest JP, Harvey SC. Molecular belt models for the apolipoprotein A-I Paris and Milano mutations. Biophysical Journal. 79: 1679-85. PMID 10969027 DOI: 10.1016/S0006-3495(00)76417-4 |
0.738 |
|
| 1999 |
Segrest JP, Jones MK, Klon AE, Sheldahl CJ, Hellinger M, De Loof H, Harvey SC. A detailed molecular belt model for apolipoprotein A-I in discoidal high density lipoprotein. The Journal of Biological Chemistry. 274: 31755-8. PMID 10542194 DOI: 10.1074/jbc.274.45.31755 |
0.759 |
|
| 1999 |
Sheldahl C, Harvey SC. Molecular dynamics on a model for nascent high-density lipoprotein: role of salt bridges. Biophysical Journal. 76: 1190-8. PMID 10049304 DOI: 10.1016/S0006-3495(99)77283-8 |
0.759 |
|
| 1999 |
Wang R, Alexander RW, VanLoock M, Vladimirov S, Bukhtiyarov Y, Harvey SC, Cooperman BS. Three-dimensional placement of the conserved 530 loop of 16 S rRNA and of its neighboring components in the 30 S subunit. Journal of Molecular Biology. 286: 521-40. PMID 9973568 DOI: 10.1006/Jmbi.1998.2493 |
0.747 |
|
| 1999 |
VanLoock MS, Easterwood TR, Harvey SC. Major groove binding of the tRNA/mRNA complex to the 16 S ribosomal RNA decoding site. Journal of Molecular Biology. 285: 2069-78. PMID 9925785 DOI: 10.1006/Jmbi.1998.2442 |
0.754 |
|
| 1999 |
Elgavish T, VanLoock MS, Harvey SC. Exploring three-dimensional structures of the HIV-1 RNA/tRNALys3 initiation complex. Journal of Molecular Biology. 285: 449-53. PMID 9878419 DOI: 10.1006/Jmbi.1998.2310 |
0.777 |
|
| 1998 |
VanLoock MS, Harris BA, Harvey SC. To knot or not to knot? Examination of 16S ribosomal RNA models. Journal of Biomolecular Structure & Dynamics. 16: 709-13. PMID 10052626 DOI: 10.1080/07391102.1998.10508282 |
0.763 |
|
| 1998 |
Harvey SC, VanLoock MS, Rasterwood TR, Tan RKZ. Molecular Modeling Studies on the Ribosome Acs Symposium Series. 682: 369-378. DOI: 10.1007/Bf00999589 |
0.4 |
|
| 1997 |
VanLoock MS, Easterwood TR, Harvey SC. tRNA/mRNA/rRNA interactions in the Escherichia coli ribosomal decoding site with and without bound aminoglycoside. Nucleic Acids Symposium Series. 68. PMID 9478209 |
0.692 |
|
| 1997 |
Harvey SC. Slipped structures in DNA triplet repeat sequences: entropic contributions to genetic instabilities. Biochemistry. 36: 3047-9. PMID 9115978 DOI: 10.1021/Bi962771E |
0.339 |
|
| 1996 |
Tan RK, Sprous D, Harvey SC. Molecular dynamics simulations of small DNA plasmids: effects of sequence and supercoiling on intramolecular motions. Biopolymers. 39: 259-78. PMID 8679953 DOI: 10.1002/(Sici)1097-0282(199608)39:2<259::Aid-Bip12>3.0.Co;2-9 |
0.328 |
|
| 1996 |
Sprous D, Tan RK, Harvey SC. Molecular modeling of closed circular DNA thermodynamic ensembles. Biopolymers. 39: 243-58. PMID 8679952 DOI: 10.1002/(Sici)1097-0282(199608)39:2<243::Aid-Bip11>3.0.Co;2-F |
0.336 |
|
| 1996 |
Dlakic M, Park K, Griffith JD, Harvey SC, Harrington RE. The organic crystallizing agent 2-methyl-2,4-pentanediol reduces DNA curvature by means of structural changes in A-tracts. The Journal of Biological Chemistry. 271: 17911-9. PMID 8663567 DOI: 10.1074/Jbc.271.30.17911 |
0.336 |
|
| 1996 |
Sanghani SR, Zakrzewska K, Harvey SC, Lavery R. Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature. Nucleic Acids Research. 24: 1632-7. PMID 8649979 DOI: 10.1093/Nar/24.9.1632 |
0.311 |
|
| 1995 |
Easterwood TR, Harvey SC. Modeling the structure of the ribosome. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 73: 751-6. PMID 8721991 DOI: 10.1139/O95-083 |
0.434 |
|
| 1994 |
Rudnicki WR, Lesyng B, Harvey SC. Lagrangian molecular dynamics using selected conformational degrees of freedom, with application to the pseudorotation dynamics of furanose rings. Biopolymers. 34: 383-92. PMID 8161710 DOI: 10.1002/Bip.360340310 |
0.302 |
|
| 1994 |
Segrest JP, Garber DW, Brouillette CG, Harvey SC, Anantharamaiah GM. The amphipathic alpha helix: a multifunctional structural motif in plasma apolipoproteins. Advances in Protein Chemistry. 45: 303-69. PMID 8154372 DOI: 10.1016/S0065-3233(08)60643-9 |
0.365 |
|
| 1994 |
Easterwood TR, Major F, Malhotra A, Harvey SC. Orientations of transfer RNA in the ribosomal A and P sites. Nucleic Acids Research. 22: 3779-86. PMID 7937092 DOI: 10.1093/Nar/22.18.3779 |
0.371 |
|
| 1994 |
Harris ME, Nolan JM, Malhotra A, Brown JW, Harvey SC, Pace NR. Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA. The Embo Journal. 13: 3953-63. PMID 7521297 DOI: 10.1002/J.1460-2075.1994.Tb06711.X |
0.435 |
|
| 1994 |
Malhotra A, Tan RK, Harvey SC. Modeling large RNAs and ribonucleoprotein particles using molecular mechanics techniques. Biophysical Journal. 66: 1777-95. PMID 7521223 DOI: 10.1016/S0006-3495(94)80972-5 |
0.449 |
|
| 1994 |
Malhotra A, Harvey SC. A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit. Journal of Molecular Biology. 240: 308-40. PMID 7518524 DOI: 10.1006/Jmbi.1994.1448 |
0.438 |
|
| 1993 |
Harvey SC. Zippier zaps: faster electrostatics calculations. Biophysical Journal. 65: 19-20. PMID 8369427 DOI: 10.1016/S0006-3495(93)81029-4 |
0.306 |
|
| 1993 |
Harvey SC, Gabb HA. Conformational transitions using molecular dynamics with minimum biasing. Biopolymers. 33: 1167-72. PMID 8364152 DOI: 10.1002/Bip.360330803 |
0.325 |
|
| 1993 |
Pearce LL, Harvey SC. Langevin dynamics studies of unsaturated phospholipids in a membrane environment. Biophysical Journal. 65: 1084-92. PMID 8241389 DOI: 10.1016/S0006-3495(93)81143-3 |
0.313 |
|
| 1993 |
Malhotra A, Gabb HA, Harvey SC. Modeling large nucleic acids Current Opinion in Structural Biology. 3: 241-246. DOI: 10.1016/S0959-440X(05)80159-9 |
0.385 |
|
| 1992 |
Gabb HA, Harris ME, Pandey NB, Marzluff WF, Harvey SC. Molecular modeling to predict the structural and biological effects of mutations in a highly conserved histone mRNA loop sequence. Journal of Biomolecular Structure & Dynamics. 9: 1119-30. PMID 1637506 DOI: 10.1080/07391102.1992.10507983 |
0.337 |
|
| 1990 |
Malhotra A, Tan RK, Harvey SC. Prediction of the three-dimensional structure of Escherichia coli 30S ribosomal subunit: a molecular mechanics approach. Proceedings of the National Academy of Sciences of the United States of America. 87: 1950-4. PMID 2408047 DOI: 10.1073/Pnas.87.5.1950 |
0.436 |
|
| 1990 |
Sharp KA, Honig B, Harvey SC. Electrical potential of transfer RNAs: codon-anticodon recognition. Biochemistry. 29: 340-6. PMID 2405900 DOI: 10.1021/Bi00454A006 |
0.338 |
|
| 1989 |
Tan RK, Harvey SC. Molecular mechanics model of supercoiled DNA. Journal of Molecular Biology. 205: 573-91. PMID 2926819 DOI: 10.1016/0022-2836(89)90227-1 |
0.35 |
|
| 1989 |
Prabahakaran M, Harvey SC. Models for two tRNAs bound to successive codons on mRNA on the ribosome. Journal of Biomolecular Structure & Dynamics. 7: 167-79. PMID 2818867 DOI: 10.1080/07391102.1989.10507758 |
0.419 |
|
| 1989 |
Lopez-Lacomba JL, Guzman M, Cortijo M, Mateo PL, Aguirre R, Harvey SC, Cheung HC. Differential scanning calorimetric study of the thermal unfolding of myosin rod, light meromyosin, and subfragment 2. Biopolymers. 28: 2143-59. PMID 2690963 DOI: 10.1002/Bip.360281208 |
0.57 |
|
| 1988 |
Tan RK, Prabhakaran M, Tung CS, Harvey SC. AUGUR: a program to predict, display and analyze the tertiary structure of B-DNA. Computer Applications in the Biosciences : Cabios. 4: 147-51. PMID 3382989 DOI: 10.1093/Bioinformatics/4.1.147 |
0.307 |
|
| 1988 |
Prabhakaran M, Harvey SC. Molecular dynamics of structural transitions and intercalation in DNA. Biopolymers. 27: 1239-48. PMID 3219395 DOI: 10.1002/Bip.360270805 |
0.311 |
|
| 1988 |
Harvey SC, Luo J, Lavery R. DNA stem-loop structures in oligopurine-oligopyrimidine triplexes. Nucleic Acids Research. 16: 11795-809. PMID 3211749 DOI: 10.1093/Nar/16.24.11795 |
0.344 |
|
| 1987 |
Prabhakaran M, Harvey SC. Asymmetric oscillations in cyclodextrin--a molecular dynamics study. Biopolymers. 26: 1087-96. PMID 3620575 DOI: 10.1002/Bip.360260708 |
0.307 |
|
| 1987 |
Tung CS, Harvey SC. A common structural feature in promoter sequences of E. coli. Nucleic Acids Research. 15: 4973-85. PMID 3299261 DOI: 10.1093/Nar/15.12.4973 |
0.323 |
|
| 1987 |
Tan RK, Harvey SC. A comparison of six DNA bending models. Journal of Biomolecular Structure & Dynamics. 5: 497-512. PMID 3271483 DOI: 10.1080/07391102.1987.10506410 |
0.312 |
|
| 1986 |
Tung CS, Harvey SC. Computer graphics program to reveal the dependence of the gross three-dimensional structure of the B-DNA double helix on primary structure. Nucleic Acids Research. 14: 381-7. PMID 3753773 DOI: 10.1093/Nar/14.1.381 |
0.327 |
|
| 1986 |
Harvey SC, Prabhakaran M. Ribose puckering: Structure, dynamics, energetics, and the pseudorotation cycle Journal of the American Chemical Society. 108: 6128-6136. DOI: 10.1021/Ja00280A004 |
0.323 |
|
| 1985 |
Prabhakaran M, Harvey SC. Molecular dynamics anneals large-scale deformations of model macromolecules: Stretching the DNA double helix to form an intercalation site Journal of Physical Chemistry. 89: 5767-5769. DOI: 10.1021/J100272A038 |
0.374 |
|
| 1984 |
Tung CS, Harvey SC, McCammon JA. Large-amplitude bending motions in phenylalanine transfer RNA. Biopolymers. 23: 2173-93. PMID 6568122 DOI: 10.1002/Bip.360231106 |
0.319 |
|
| 1984 |
Harvey SC, Prabhakaran M, Mao B, McCammon JA. Phenylalanine transfer RNA: molecular dynamics simulation. Science (New York, N.Y.). 223: 1189-91. PMID 6560785 DOI: 10.1126/Science.6560785 |
0.314 |
|
| 1984 |
Tung CS, Harvey SC. A molecular mechanical model to predict the helix twist angles of B-DNA. Nucleic Acids Research. 12: 3343-56. PMID 6326059 DOI: 10.1093/Nar/12.7.3343 |
0.35 |
|
| 1983 |
Prabhakaran M, Harvey SC, Mao B, McCammon JA. Molecular dynamics of phenylalanine transfer RNA. Journal of Biomolecular Structure & Dynamics. 1: 357-69. PMID 6401115 DOI: 10.1080/07391102.1983.10507447 |
0.361 |
|
| 1981 |
Harvey SC, McCammon JA. Intramolecular flexibility in phenylalanine transfer RNA. Nature. 294: 286-7. PMID 7029310 DOI: 10.1038/294286A0 |
0.413 |
|
| 1980 |
Harvey SC, Cheung HC. Transport properties of particles with segmental flexibility. II. Decay of fluorescence polarization anisotropy from hinged macromolecules Biopolymers. 19: 913-930. DOI: 10.1002/Bip.1980.360190414 |
0.587 |
|
| 1977 |
Harvey SC, Cheung HC. Fluorescence depolarization studies on the flexibility of myosin rod. Biochemistry. 16: 5181-7. PMID 921927 DOI: 10.1021/Bi00643A004 |
0.561 |
|
| 1977 |
Harvey SC, Cheung HC, Thames KE. Cooperativity in F-actin filaments on binding of myosin subfragments, demonstrated by fluorescence of 1, N6- ethenoadenosine diphosphate. Archives of Biochemistry and Biophysics. 179: 391-6. PMID 322615 DOI: 10.1016/0003-9861(77)90126-6 |
0.558 |
|
| 1976 |
Harvey SC, Cheung HC. Fluorescence studies of 1,N6-ethenoadenosine triphosphate bound to G-actin: the nucleotide base is inaccessible to water. Biochemical and Biophysical Research Communications. 73: 865-8. PMID 15625854 DOI: 10.1016/0006-291X(76)90201-1 |
0.558 |
|
| 1976 |
Harvey SC, Cheung HC. Fluorescence studies of 1,N6-ethenoadenosine triphosphate bound to G-actin: The nucleotide base is inaccessible to water Biochemical and Biophysical Research Communications. 73: 865-868. DOI: 10.1016/0006-291X(76)90201-1 |
0.512 |
|
| 1974 |
Thames KE, Cheung HC, Harvey SC. Binding of 1,N6-ethanoadenosine triphosphate to actin. Biochemical and Biophysical Research Communications. 60: 1252-61. PMID 4214008 DOI: 10.1016/0006-291X(74)90333-7 |
0.576 |
|
| 1972 |
Harvey SC, Cheung HC. Computer simulation of fluorescence depolarization due to brownian motion. Proceedings of the National Academy of Sciences of the United States of America. 69: 3670-2. PMID 16592039 DOI: 10.1073/Pnas.69.12.3670 |
0.506 |
|
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