Year |
Citation |
Score |
2023 |
Mohamad-Fauzi N, Shaw C, Foutouhi SH, Hess M, Kong N, Kol A, Storey DB, Desai PT, Shah J, Borjesson D, Murray JD, Weimer BC. enhances osteogenic differentiation in adipose-derived mesenchymal stem cells. Frontiers in Cell and Developmental Biology. 11: 1077350. PMID 37009487 DOI: 10.3389/fcell.2023.1077350 |
0.752 |
|
2021 |
Beck KL, Haiminen N, Chambliss D, Edlund S, Kunitomi M, Huang BC, Kong N, Ganesan B, Baker R, Markwell P, Kawas B, Davis M, Prill RJ, Krishnareddy H, Seabolt E, ... ... Weimer BC, et al. Monitoring the microbiome for food safety and quality using deep shotgun sequencing. Npj Science of Food. 5: 3. PMID 33558514 DOI: 10.1038/s41538-020-00083-y |
0.708 |
|
2020 |
Higdon SM, Pozzo T, Tibbett EJ, Chiu C, Jeannotte R, Weimer BC, Bennett AB. Diazotrophic bacteria from maize exhibit multifaceted plant growth promotion traits in multiple hosts. Plos One. 15: e0239081. PMID 32925972 DOI: 10.1371/Journal.Pone.0239081 |
0.359 |
|
2020 |
Dias B, Weimer B. Conversion of methionine to thiols by lactococci, lactobacilli, and brevibacteria Applied and Environmental Microbiology. 64: 3320-6. PMID 9726877 DOI: 10.1128/Aem.64.9.3320-3326.1998 |
0.338 |
|
2019 |
Haiminen N, Edlund S, Chambliss D, Kunitomi M, Weimer BC, Ganesan B, Baker R, Markwell P, Davis M, Huang BC, Kong N, Prill RJ, Marlowe CH, Quintanar A, Pierre S, et al. Food authentication from shotgun sequencing reads with an application on high protein powders. Npj Science of Food. 3: 24. PMID 33772018 DOI: 10.1038/s41538-019-0056-6 |
0.697 |
|
2019 |
Haiminen N, Edlund S, Chambliss D, Kunitomi M, Weimer BC, Ganesan B, Baker R, Markwell P, Davis M, Huang BC, Kong N, Prill RJ, Marlowe CH, Quintanar A, Pierre S, et al. Food authentication from shotgun sequencing reads with an application on high protein powders. Npj Science of Food. 3: 24. PMID 31754632 DOI: 10.1038/s41538-019-0056-6 |
0.697 |
|
2019 |
Kaufman JH, Elkins CA, Davis M, Weis AM, Huang BC, Mammel MK, Patel IR, Beck KL, Edlund S, Chambliss D, Douglas J, Bianco S, Kunitomi M, Weimer BC. Insular Microbiogeography: Three Pathogens as Exemplars. Current Issues in Molecular Biology. 36: 89-108. PMID 31596250 DOI: 10.21775/Cimb.036.089 |
0.341 |
|
2018 |
Weimer BC, Chen P, Desai PT, Chen D, Shah J. Whole Cell Cross-Linking to Discover Host-Microbe Protein Cognate Receptor/Ligand Pairs. Frontiers in Microbiology. 9: 1585. PMID 30072965 DOI: 10.3389/Fmicb.2018.01585 |
0.76 |
|
2017 |
Chen P, Reiter T, Huang B, Kong N, Weimer BC. Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection. Pathogens (Basel, Switzerland). 6. PMID 29257110 DOI: 10.3390/Pathogens6040068 |
0.34 |
|
2017 |
Arabyan N, Huang BC, Weimer BC. Draft Genome Sequences of Salmonella enterica Serovar Typhimurium LT2 with Deleted Chitinases That Are Emerging Virulence Factors. Genome Announcements. 5. PMID 28774970 DOI: 10.1128/Genomea.00659-17 |
0.328 |
|
2017 |
Stevens JR, Jones TR, Lefevre M, Ganesan B, Weimer BC. SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree. Computational and Structural Biotechnology Journal. 15: 372-378. PMID 28748045 DOI: 10.1016/J.Csbj.2017.06.002 |
0.712 |
|
2017 |
Kong N, Davis M, Arabyan N, Huang BC, Weis AM, Chen P, Thao K, Ng W, Chin N, Foutouhi S, Foutouhi A, Kaufman J, Xie Y, Storey DB, Weimer BC. Draft Genome Sequences of 1,183 Salmonella Strains from the 100K Pathogen Genome Project. Genome Announcements. 5. PMID 28705963 DOI: 10.1128/Genomea.00518-17 |
0.436 |
|
2017 |
Emond-Rheault JG, Jeukens J, Freschi L, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Colavecchio A, Barrere V, Cadieux B, Arya G, Bekal S, Berry C, Burnett E, Cavestri C, Chapin TK, ... ... Weimer BC, et al. A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. Frontiers in Microbiology. 8: 996. PMID 28626454 DOI: 10.3389/Fmicb.2017.00996 |
0.348 |
|
2017 |
Arabyan N, Huang BC, Weimer BC. Draft Genome Sequences of Salmonella Lysozyme Gene Knockout Mutants. Genome Announcements. 5. PMID 28596411 DOI: 10.1128/Genomea.00519-17 |
0.313 |
|
2017 |
Arabyan N, Huang BC, Weimer BC. Amylases and Their Importance during Glycan Degradation: Genome Sequence Release of Salmonella Amylase Knockout Strains. Genome Announcements. 5. PMID 28522713 DOI: 10.1128/Genomea.00355-17 |
0.305 |
|
2017 |
Arabyan N, Weis AM, Huang BC, Weimer BC. Implication of Sialidases in Salmonella Infection: Genome Release of Sialidase Knockout Strains from Salmonella enterica Serovar Typhimurium LT2. Genome Announcements. 5. PMID 28495784 DOI: 10.1128/Genomea.00341-17 |
0.356 |
|
2017 |
Weis AM, Gilpin B, Huang BC, Kong N, Chen P, Weimer BC. Shigella Draft Genome Sequences: Resources for Food Safety and Public Health. Genome Announcements. 5. PMID 28428292 DOI: 10.1128/Genomea.00176-17 |
0.315 |
|
2017 |
Draper JL, Hansen LM, Bernick DL, Abedrabbo S, Underwood JG, Kong N, Huang BC, Weis AM, Weimer BC, van Vliet AH, Pourmand N, Solnick JV, Karplus K, Ottemann KM. Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains. Mbio. 8. PMID 28223462 DOI: 10.1128/Mbio.02321-16 |
0.34 |
|
2017 |
Chen P, Kong N, Huang B, Thao K, Ng W, Storey DB, Arabyan N, Foutouhi A, Foutouhi S, Weimer BC. 100K Pathogen Genome Project: 306 Listeria Draft Genome Sequences for Food Safety and Public Health. Genome Announcements. 5. PMID 28183778 DOI: 10.1128/Genomea.00967-16 |
0.314 |
|
2017 |
Weis AM, Huang BC, Storey DB, Kong N, Chen P, Arabyan N, Gilpin B, Mason C, Townsend AK, Smith WA, Byrne BA, Taff CC, Weimer BC. Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project. Genome Announcements. 5. PMID 28057746 DOI: 10.1128/Genomea.00925-16 |
0.307 |
|
2016 |
Weis AM, Clothier KA, Huang BC, Kong N, Weimer BC. Draft Genome Sequences of Campylobacter jejuni Strains That Cause Abortion in Livestock. Genome Announcements. 4. PMID 27908990 DOI: 10.1128/Genomea.01324-16 |
0.308 |
|
2016 |
Chen P, den Bakker HC, Korlach J, Kong N, Storey DB, Paxinos EE, Ashby M, Clark T, Luong K, Wiedmann M, Weimer BC. Comparative Genomics Reveal the Diversity of Restriction Methylation Systems in Listeria monocytogenes. Applied and Environmental Microbiology. PMID 27836852 DOI: 10.1128/Aem.02091-16 |
0.342 |
|
2016 |
Park D, Arabyan N, Williams CC, Song T, Mitra A, Weimer BC, Maverakis E, Lebrilla CB. Salmonella Typhimurium enzymatically landscapes the host intestinal epithelial cell surface glycome to increase invasion. Molecular & Cellular Proteomics : McP. PMID 27754876 DOI: 10.1074/Mcp.M116.063206 |
0.335 |
|
2016 |
Weis AM, Storey DB, Taff CC, Townsend AK, Huang BC, Kong NT, Clothier KA, Spinner A, Byrne BA, Weimer BC. Genomic Comparisons and Zoonotic Potential of Campylobacter Between Birds, Primates, and Livestock. Applied and Environmental Microbiology. PMID 27736787 DOI: 10.1128/Aem.01746-16 |
0.338 |
|
2016 |
Arabyan N, Park D, Foutouhi S, Weis AM, Huang BC, Williams CC, Desai P, Shah J, Jeannotte R, Kong N, Lebrilla CB, Weimer BC. Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. Scientific Reports. 6: 29525. PMID 27389966 DOI: 10.1038/Srep29525 |
0.77 |
|
2016 |
Weimer BC, Storey DB, Elkins CA, Baker RC, Markwell P, Chambliss DD, Edlund SB, Kaufman JH. Defining the food microbiome for authentication, safety, and process management Ibm Journal of Research and Development. 60: 1:1-1:13. DOI: 10.1147/Jrd.2016.2582598 |
0.324 |
|
2015 |
Dhanasekaran AR, Pearson JL, Ganesan B, Weimer BC. Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction. Bmc Bioinformatics. 16: 62. PMID 25887958 DOI: 10.1186/S12859-015-0462-Y |
0.746 |
|
2015 |
Lüdeke CH, Kong N, Weimer BC, Fischer M, Jones JL. Complete Genome Sequences of a Clinical Isolate and an Environmental Isolate of Vibrio parahaemolyticus. Genome Announcements. 3. PMID 25814612 DOI: 10.1128/Genomea.00216-15 |
0.308 |
|
2014 |
Ferreyra JA, Wu KJ, Hryckowian AJ, Bouley DM, Weimer BC, Sonnenburg JL. Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance. Cell Host & Microbe. 16: 770-7. PMID 25498344 DOI: 10.1016/J.Chom.2014.11.003 |
0.31 |
|
2014 |
Shah J, Desai PT, Weimer BC. Genetic mechanisms underlying the pathogenicity of cold-stressed Salmonella enterica serovar typhimurium in cultured intestinal epithelial cells. Applied and Environmental Microbiology. 80: 6943-53. PMID 25192993 DOI: 10.1128/Aem.01994-14 |
0.773 |
|
2014 |
Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer BC, Wiedmann M, Weinstock GM, Fields PI, McClelland M. Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerging Infectious Diseases. 20: 1481-9. PMID 25147968 DOI: 10.3201/Eid2009.131095 |
0.661 |
|
2014 |
Ganesan B, Weimer BC, Pinzon J, Dao Kong N, Rompato G, Brothersen C, McMahon DJ. Probiotic bacteria survive in Cheddar cheese and modify populations of other lactic acid bacteria. Journal of Applied Microbiology. 116: 1642-56. PMID 24905221 DOI: 10.1111/Jam.12482 |
0.727 |
|
2014 |
Chen P, Jeannotte R, Weimer BC. Exploring bacterial epigenomics in the next-generation sequencing era: a new approach for an emerging frontier. Trends in Microbiology. 22: 292-300. PMID 24725482 DOI: 10.1016/J.Tim.2014.03.005 |
0.32 |
|
2014 |
Bua-In S, Paisooksantivatana Y, Weimer B, Chowpongpang S. Molecular cloning and expression levels of the monoterpene synthase gene (ZMM1) in Cassumunar ginger (Zingiber montanum (Koenig) Link ex Dietr.) Archives of Biological Sciences. 66: 1321-1331. DOI: 10.2298/Abs1404321B |
0.31 |
|
2013 |
He X, Mishchuk DO, Shah J, Weimer BC, Slupsky CM. Cross-talk between E. coli strains and a human colorectal adenocarcinoma-derived cell line. Scientific Reports. 3: 3416. PMID 24301462 DOI: 10.1038/Srep03416 |
0.734 |
|
2013 |
Shah J, Desai PT, Chen D, Stevens JR, Weimer BC. Preadaptation to cold stress in Salmonella enterica serovar Typhimurium increases survival during subsequent acid stress exposure. Applied and Environmental Microbiology. 79: 7281-9. PMID 24056458 DOI: 10.1128/Aem.02621-13 |
0.773 |
|
2013 |
Ng KM, Ferreyra JA, Higginbottom SK, Lynch JB, Kashyap PC, Gopinath S, Naidu N, Choudhury B, Weimer BC, Monack DM, Sonnenburg JL. Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature. 502: 96-9. PMID 23995682 DOI: 10.1038/Nature12503 |
0.389 |
|
2013 |
Maga EA, Weimer BC, Murray JD. Dissecting the role of milk components on gut microbiota composition. Gut Microbes. 4: 136-9. PMID 23235404 DOI: 10.4161/Gmic.23188 |
0.304 |
|
2012 |
Maga EA, Desai PT, Weimer BC, Dao N, Kültz D, Murray JD. Consumption of lysozyme-rich milk can alter microbial fecal populations. Applied and Environmental Microbiology. 78: 6153-60. PMID 22752159 DOI: 10.1128/Aem.00956-12 |
0.674 |
|
2012 |
Heithoff DM, Shimp WR, House JK, Xie Y, Weimer BC, Sinsheimer RL, Mahan MJ. Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature. Plos Pathogens. 8: e1002647. PMID 22511871 DOI: 10.1371/Journal.Ppat.1002647 |
0.464 |
|
2012 |
Barboza M, Pinzon J, Wickramasinghe S, Froehlich JW, Moeller I, Smilowitz JT, Ruhaak LR, Huang J, Lönnerdal B, German JB, Medrano JF, Weimer BC, Lebrilla CB. Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactation enhancing its role in pathogenic bacteria-host interactions. Molecular & Cellular Proteomics : McP. 11: M111.015248. PMID 22261723 DOI: 10.1074/Mcp.M111.015248 |
0.357 |
|
2011 |
Marcobal A, Barboza M, Sonnenburg ED, Pudlo N, Martens EC, Desai P, Lebrilla CB, Weimer BC, Mills DA, German JB, Sonnenburg JL. Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways. Cell Host & Microbe. 10: 507-14. PMID 22036470 DOI: 10.1016/J.Chom.2011.10.007 |
0.661 |
|
2010 |
Parnell JJ, Rompato G, Latta LC, Pfrender ME, Van Nostrand JD, He Z, Zhou J, Andersen G, Champine P, Ganesan B, Weimer BC. Functional biogeography as evidence of gene transfer in hypersaline microbial communities. Plos One. 5: e12919. PMID 20957119 DOI: 10.1371/Journal.Pone.0012919 |
0.715 |
|
2010 |
LoCascio RG, Desai P, Sela DA, Weimer BC, Mills DA. Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization. Applied and Environmental Microbiology. 76: 7373-7381. PMID 20802066 DOI: 10.1128/Aem.00675-10 |
0.671 |
|
2009 |
Bugger H, Chen D, Riehle C, Soto J, Theobald HA, Hu XX, Ganesan B, Weimer BC, Abel ED. Tissue-specific remodeling of the mitochondrial proteome in type 1 diabetic akita mice. Diabetes. 58: 1986-97. PMID 19542201 DOI: 10.2337/Db09-0259 |
0.679 |
|
2008 |
Lee JH, Karamychev VN, Kozyavkin SA, Mills D, Pavlov AR, Pavlova NV, Polouchine NN, Richardson PM, Shakhova VV, Slesarev AI, Weimer B, O'Sullivan DJ. Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth. Bmc Genomics. 9: 247. PMID 18505588 DOI: 10.1186/1471-2164-9-247 |
0.337 |
|
2008 |
Desai PT, Walsh MK, Weimer BC. Solid-phase capture of pathogenic bacteria by using gangliosides and detection with real-time PCR. Applied and Environmental Microbiology. 74: 2254-8. PMID 18263751 DOI: 10.1128/Aem.02601-07 |
0.646 |
|
2007 |
Ganesan B, Stuart MR, Weimer BC. Carbohydrate starvation causes a metabolically active but nonculturable state in Lactococcus lactis. Applied and Environmental Microbiology. 73: 2498-512. PMID 17293521 DOI: 10.1128/Aem.01832-06 |
0.741 |
|
2007 |
Chen D, Liang M, DeWald D, Weimer B, Peel MD, Bugbee B, Michaelson J, Davis E, Wu Y. Identification of dehydration responsive genes from two non-nodulated alfalfa cultivars using Medicago truncatula microarrays Acta Physiologiae Plantarum. 30: 183-199. DOI: 10.1007/S11738-007-0107-5 |
0.31 |
|
2006 |
Liang Y, Gardner DR, Miller CD, Chen D, Anderson AJ, Weimer BC, Sims RC. Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS. Applied and Environmental Microbiology. 72: 7821-8. PMID 17041157 DOI: 10.1128/Aem.01274-06 |
0.312 |
|
2006 |
Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, ... ... Weimer B, et al. Comparative genomics of the lactic acid bacteria. Proceedings of the National Academy of Sciences of the United States of America. 103: 15611-6. PMID 17030793 DOI: 10.1073/Pnas.0607117103 |
0.755 |
|
2006 |
Ganesan B, Dobrowolski P, Weimer BC. Identification of the leucine-to-2-methylbutyric acid catabolic pathway of Lactococcus lactis. Applied and Environmental Microbiology. 72: 4264-73. PMID 16751541 DOI: 10.1128/Aem.00448-06 |
0.749 |
|
2004 |
Xie Y, Chou LS, Cutler A, Weimer B. DNA Macroarray profiling of Lactococcus lactis subsp. lactis IL1403 gene expression during environmental stresses. Applied and Environmental Microbiology. 70: 6738-47. PMID 15528540 DOI: 10.1128/Aem.70.11.6738-6747.2004 |
0.759 |
|
2004 |
Ganesan B, Seefeldt K, Weimer BC. Fatty acid production from amino acids and alpha-keto acids by Brevibacterium linens BL2. Applied and Environmental Microbiology. 70: 6385-93. PMID 15528496 DOI: 10.1128/Aem.70.11.6385-6393.2004 |
0.728 |
|
2004 |
Ganesan B, Weimer BC. Role of aminotransferase IlvE in production of branched-chain fatty acids by Lactococcus lactis subsp. lactis. Applied and Environmental Microbiology. 70: 638-41. PMID 14711703 DOI: 10.1128/Aem.70.1.638-641.2004 |
0.719 |
|
2004 |
Ganesan B, Seefeldt K, Koka RC, Dias B, Weimer BC. Monocarboxylic acid production by lactococci and lactobacilli International Dairy Journal. 14: 237-246. DOI: 10.1016/J.Idairyj.2003.07.004 |
0.72 |
|
2003 |
Ummadi M, Weimer BC. Use of capillary electrophoresis and laser-induced fluorescence for attomole detection of amino acids. Journal of Chromatography. A. 964: 243-53. PMID 12198853 DOI: 10.1016/S0021-9673(02)00692-1 |
0.333 |
|
2002 |
Klaenhammer T, Altermann E, Arigoni F, Bolotin A, Breidt F, Broadbent J, Cano R, Chaillou S, Deutscher J, Gasson M, van de Guchte M, Guzzo J, Hartke A, Hawkins T, Hols P, ... ... Weimer B, et al. Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek. 82: 29-58. PMID 12369195 DOI: 10.1023/A:1020638309912 |
0.364 |
|
2002 |
Ummadi M, Weimer BC. Tryptophan catabolism in Brevibacterium linens as a potential cheese flavor adjunct. Journal of Dairy Science. 84: 1773-82. PMID 11518299 DOI: 10.3168/Jds.S0022-0302(01)74614-0 |
0.343 |
|
2001 |
Seefeldt KE, Weimer BC. Diversity of sulfur compound production in lactic acid bacteria. Journal of Dairy Science. 83: 2740-6. PMID 11132840 DOI: 10.3168/Jds.S0022-0302(00)75168-X |
0.329 |
|
2001 |
Chou L, Weimer BC, Cutler R. Relationship of arginine and lactose utilization by Lactococcus lactis ssp. lactis ML3 International Dairy Journal. 11: 253-258. DOI: 10.1016/S0958-6946(01)00055-3 |
0.738 |
|
1999 |
Pederson JA, Mileski GJ, Weimer BC, Steele JL. Genetic characterization of a cell envelope-associated proteinase from Lactobacillus helveticus CNRZ32 Journal of Bacteriology. 181: 4592-4597. PMID 10419958 DOI: 10.1128/Jb.181.15.4592-4597.1999 |
0.369 |
|
1999 |
Chou LS, Weimer B. Isolation and characterization of acid- and bile-tolerant isolates from strains of Lactobacillus acidophilus. Journal of Dairy Science. 82: 23-31. PMID 10022003 DOI: 10.3168/Jds.S0022-0302(99)75204-5 |
0.368 |
|
1999 |
Stuart MR, Chou LS, Weimer BC. Influence of carbohydrate starvation and arginine on culturability and amino acid utilization of lactococcus lactis subsp. lactis. Applied and Environmental Microbiology. 65: 665-73. PMID 9925598 DOI: 10.1128/Aem.65.2.665-673.1999 |
0.743 |
|
1999 |
Weimer B, Seefeldt K, Dias B. Antonie Van Leeuwenhoek. 76: 247-261. DOI: 10.1023/A:1002050625344 |
0.32 |
|
1997 |
Gao S, Oh DH, Broadbent JR, Johnson ME, Weimer BC, Steele JL. Aromatic amino acid catabolism by lactococci Lait. 77: 371-381. DOI: 10.1051/Lait:1997325 |
0.364 |
|
1991 |
Oberg CJ, Weimer BC, Moyes LV, Brown RJ, Richardson GH. Proteolytic Characterization of Lactobacillus delbrueckii ssp. bulgaricus Strains by the o-Phthaldialdehyde Test and Amino Acid Analysis Journal of Dairy Science. 74: 398-403. DOI: 10.3168/Jds.S0022-0302(91)78181-2 |
0.323 |
|
1989 |
Weimer B, Oberg C, Moyes L, Brown R, Richardson G. Comparison of Classical Ion Exchange Amino Acid Analysis and o-Phthaldialdehyde Methods to Characterize Proteolysis by Lactobacillus bulgaricus Journal of Dairy Science. 72: 2873-2876. DOI: 10.3168/Jds.S0022-0302(89)79437-6 |
0.304 |
|
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