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James A. Foster - Publications

Affiliations: 
University of Idaho, Moscow, ID, United States 
Area:
Computer Science
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lackey KA, Williams JE, Meehan CL, Zachek JA, Benda ED, Price WJ, Foster JA, Sellen DW, Kamau-Mbuthia EW, Kamundia EW, Mbugua S, Moore SE, Prentice AM, K DG, Kvist LJ, et al. What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study. Frontiers in Nutrition. 6: 45. PMID 31058158 DOI: 10.3389/Fnut.2019.00045  0.316
2015 Beck D, Foster JA. Machine learning classifiers provide insight into the relationship between microbial communities and bacterial vaginosis. Biodata Mining. 8: 23. PMID 26294933 DOI: 10.1186/S13040-015-0055-3  0.559
2015 Zhbannikov IY, Foster JA. MetAmp: combining amplicon data from multiple markers for OTU analysis. Bioinformatics (Oxford, England). 31: 1830-2. PMID 25630378 DOI: 10.1093/Bioinformatics/Btv049  0.352
2015 Beck D, Dennis C, Foster JA. Seed: a user-friendly tool for exploring and visualizing microbial community data. Bioinformatics (Oxford, England). 31: 602-3. PMID 25332377 DOI: 10.1093/Bioinformatics/Btu693  0.521
2015 Beck D, Foster JA. Machine learning classifiers provide insight into the relationship between microbial communities and bacterial vaginosis Biodata Mining. 8: 1-9. DOI: 10.1186/s13040-015-0055-3  0.499
2014 Baker YS, Agrawal R, Foster JA, Beck D, Dozier G. Detecting Bacterial Vaginosis Using Machine Learning. Proceedings of the 2014 Acm Southeast Regional Conference / Association For Computing Machinery-Digital Library. 2014. PMID 26753179 DOI: 10.1145/2638404.2638521  0.466
2014 Baker YS, Agrawal R, Foster JA, Beck D, Dozier G. APPLYING MACHINE LEARNING TECHNIQUES IN DETECTING BACTERIAL VAGINOSIS. Proceedings / International Conference On Machine Learning and Cybernetics. International Conference On Machine Learning and Cybernetics. 2014: 241-246. PMID 25914861 DOI: 10.1109/ICMLC.2014.7009123  0.483
2014 Carter J, Beck D, Williams H, Foster J, Dozier G. GA-Based Selection of Vaginal Microbiome Features Associated with Bacterial Vaginosis. Genetic and Evolutionary Computation Conference : [Proceedings] / Sponsored by Acm Sigevo. Genetic and Evolutionary Computation Conference. 2014: 265-268. PMID 25541628 DOI: 10.1145/2576768.2598378  0.484
2014 Beck D, Foster JA. Machine learning techniques accurately classify microbial communities by bacterial vaginosis characteristics. Plos One. 9: e87830. PMID 24498380 DOI: 10.1371/Journal.Pone.0087830  0.565
2014 Baker YS, Beck D, Agrawal R, Dozier G, Foster JA. Detecting Bacterial Vaginosis using machine learning Proceedings of the 2014 Acm Southeast Regional Conference, Acm SE 2014. DOI: 10.1145/2638404.2638521  0.438
2013 Allen HK, Bunge J, Foster JA, Bayles DO, Stanton TB. Estimation of viral richness from shotgun metagenomes using a frequency count approach. Microbiome. 1: 5. PMID 24451229 DOI: 10.1186/2049-2618-1-5  0.31
2013 Zhbannikov IY, Hunter SS, Settles ML, Foster JA. SlopMap: a software application tool for quick and flexible identification of similar sequences using exact k-mer matching. Journal of Data Mining in Genomics & Proteomics. 4. PMID 24404406 DOI: 10.4172/2153-0602.1000133  0.307
2013 Foster JA. Introduction to special section: Best of EuroGP/EvoBio Genetic Programming and Evolvable Machines. 14: 429-430. DOI: 10.1007/S10710-013-9194-9  0.313
2012 Silva S, Foster JA. Guest editorial: special issue on selected papers from the European conference on genetic programming. Genetic Programming and Evolvable Machines. 13: 271-273. PMID 27182197 DOI: 10.1007/S10710-012-9167-4  0.313
2012 Copeland WK, Krishnan V, Beck D, Settles M, Foster JA, Cho KC, Day M, Hickey R, Schütte UM, Zhou X, Williams CJ, Forney LJ, Abdo Z. mcaGUI: microbial community analysis R-Graphical User Interface (GUI). Bioinformatics (Oxford, England). 28: 2198-9. PMID 22692220 DOI: 10.1093/Bioinformatics/Bts338  0.561
2012 Foster JA, Bunge J, Gilbert JA, Moore JH. Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life. Briefings in Bioinformatics. 13: 420-9. PMID 22308073 DOI: 10.1093/Bib/Bbr080  0.324
2011 Day MD, Beck D, Foster JA. Microbial Communities as Experimental Units. Bioscience. 61: 398-406. PMID 21731083 DOI: 10.1525/Bio.2011.61.5.9  0.552
2011 Hunt KM, Foster JA, Forney LJ, Schütte UM, Beck DL, Abdo Z, Fox LK, Williams JE, McGuire MK, McGuire MA. Characterization of the diversity and temporal stability of bacterial communities in human milk. Plos One. 6: e21313. PMID 21695057 DOI: 10.1371/Journal.Pone.0021313  0.553
2011 Beck D, Settles M, Foster JA. OTUbase: an R infrastructure package for operational taxonomic unit data. Bioinformatics (Oxford, England). 27: 1700-1. PMID 21498398 DOI: 10.1093/Bioinformatics/Btr196  0.518
2010 Schütte UM, Abdo Z, Foster J, Ravel J, Bunge J, Solheim B, Forney LJ. Bacterial diversity in a glacier foreland of the high Arctic. Molecular Ecology. 19: 54-66. PMID 20331770 DOI: 10.1111/J.1365-294X.2009.04479.X  0.303
2007 Zhou X, Brown CJ, Abdo Z, Davis CC, Hansmann MA, Joyce P, Foster JA, Forney LJ. Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women. The Isme Journal. 1: 121-33. PMID 18043622 DOI: 10.1038/Ismej.2007.12  0.304
2007 Shyu C, Soule T, Bent SJ, Foster JA, Forney LJ. MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes. Microbial Ecology. 53: 562-70. PMID 17406775 DOI: 10.1007/S00248-006-9106-0  0.627
2006 Evans J, Sheneman L, Foster J. Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method. Journal of Molecular Evolution. 62: 785-92. PMID 16752216 DOI: 10.1007/S00239-005-0176-2  0.304
2004 Shyu C, Sheneman L, Foster JA. Multiple sequence alignment with evolutionary computation Genetic Programming and Evolvable Machines. 5: 121-144. DOI: 10.1023/B:Genp.0000023684.05565.78  0.603
2003 Imamura K, Soule T, Heckendorn RB, Foster JA. Behavioral diversity and a probabilistically optimal GP ensemble Genetic Programming and Evolvable Machines. 4: 235-253. DOI: 10.1023/A:1025124423708  0.519
2003 Shyu C, Foster JA. Evolving consensus sequence for multiple sequence alignment with a genetic algorithm Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2724: 2313-2324.  0.568
2002 Shyu C, Foster JA, Liao KX, Bent SJ, Sale K, Forney LJ, Soule T. MiCA: Web-based computational tools for the analysis of microbial community structure and composition based on T-RFLP of 16S rRNA genes Proceedings - Ieee Computer Society Bioinformatics Conference, Csb 2002. 341. DOI: 10.1109/CSB.2002.1039364  0.584
2002 Shyu C, Foster JA, Forney LJ. Electronic polymerase chain reaction (EPCR) search algorithm Proceedings - Ieee Computer Society Bioinformatics Conference, Csb 2002. 338. DOI: 10.1109/CSB.2002.1039361  0.518
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