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Nader Pourmand - Publications

Affiliations: 
Biomolecular Engineering and Bioinformatics University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
Bioinformatics Biology, Immunology
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Chaves G, Stanley J, Pourmand N. Mutant Huntingtin Affects Diabetes and Alzheimer's Markers in Human and Cell Models of Huntington's Disease. Cells. 8. PMID 31450785 DOI: 10.3390/Cells8090962  0.313
2019 Tollis M, Robbins J, Webb AE, Kuderna LFK, Caulin AF, Garcia JD, Bèrubè M, Pourmand N, Marques-Bonet T, O'Connell MJ, Palsbøll PJ, Maley CC. Return to the sea, get huge, beat cancer: an analysis of cetacean genomes including an assembly for the humpback whale (Megaptera novaeangliae). Molecular Biology and Evolution. PMID 31070747 DOI: 10.1093/Molbev/Msz099  0.323
2018 Franco M, Panas MW, Marino ND, Lee MW, Buchholz KR, Kelly FD, Bednarski JJ, Sleckman BP, Pourmand N, Boothroyd JC. Erratum for Franco et al., "A Novel Secreted Protein, MYR1, Is Central to 's Manipulation of Host Cells". Mbio. 9. PMID 30279290 DOI: 10.1128/Mbio.01869-18  0.544
2018 Khan SY, Ali M, Kabir F, Chen R, Na CH, Lee MW, Pourmand N, Hackett SF, Riazuddin SA. Identification of novel transcripts and peptides in developing murine lens. Scientific Reports. 8: 11162. PMID 30042402 DOI: 10.1038/S41598-018-28727-W  0.525
2018 Bulbul G, Chaves G, Olivier J, Ozel RE, Pourmand N. Nanopipettes as Monitoring Probes for the Single Living Cell: State of the Art and Future Directions in Molecular Biology. Cells. 7. PMID 29882813 DOI: 10.3390/Cells7060055  0.328
2017 Draper JL, Hansen LM, Bernick DL, Abedrabbo S, Underwood JG, Kong N, Huang BC, Weis AM, Weimer BC, van Vliet AH, Pourmand N, Solnick JV, Karplus K, Ottemann KM. Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains. Mbio. 8. PMID 28223462 DOI: 10.1128/Mbio.02321-16  0.326
2016 Khan SY, Vasanth S, Kabir F, Gottsch JD, Khan AO, Chaerkady R, Lee MW, Leitch CC, Ma Z, Laux J, Villasmil R, Khan SN, Riazuddin S, Akram J, Cole RN, ... ... Pourmand N, et al. FOXE3 contributes to Peters anomaly through transcriptional regulation of an autophagy-associated protein termed DNAJB1. Nature Communications. 7: 10953. PMID 27218149 DOI: 10.1038/Ncomms10953  0.55
2015 Yau C, Meyer L, Benz S, Vaske C, Scott G, Egan B, Labhart P, Pourmand N, Benz CC. FOXM1 cistrome predicts breast cancer metastatic outcome better than FOXM1 expression levels or tumor proliferation index. Breast Cancer Research and Treatment. 154: 23-32. PMID 26456572 DOI: 10.1007/S10549-015-3589-7  0.302
2015 Wu A, Zhang Q, Lambert G, Khin Z, Gatenby RA, Kim HJ, Pourmand N, Bussey K, Davies PC, Sturm JC, Austin RH. Ancient hot and cold genes and chemotherapy resistance emergence. Proceedings of the National Academy of Sciences of the United States of America. PMID 26240372 DOI: 10.1073/Pnas.1512396112  0.511
2015 Khan SY, Hackett SF, Lee MC, Pourmand N, Talbot CC, Riazuddin SA. Transcriptome Profiling of Developing Murine Lens Through RNA Sequencing. Investigative Ophthalmology & Visual Science. 56: 4919-26. PMID 26225632 DOI: 10.1167/Iovs.14-16253  0.35
2015 Youngren JF, Foye A, Thomas G, Stuart JM, Goldstein T, Robert B, Bivol A, Sokolov A, Ryan CJ, Pourmand N, Beer TM, Evans CP, Lara P, Gleave ME, Chi KN, et al. Abstract A12: Identification of pathways associated with abiraterone resistance in metastatic castration resistant prostate cancer: Preliminary results from the SU2C/AACR West Coast Prostate Cancer Dream Team Clinical Cancer Research. 21. DOI: 10.1158/1557-3265.Pms14-A12  0.317
2015 Lopez-Diaz F, Lee MW, Tariq M, Khan S, Dayn Y, Vaske C, Pourmand N, Emerson BM. Abstract A09: Single-cell RNA sequencing reveals phenotypic plasticity of drug tolerant, clonal populations of cancer cells Clinical Cancer Research. 21. DOI: 10.1158/1557-3265.Pms14-A09  0.581
2014 Lee MC, Lopez-Diaz FJ, Khan SY, Tariq MA, Dayn Y, Vaske CJ, Radenbaugh AJ, Kim HJ, Emerson BM, Pourmand N. Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 111: E4726-35. PMID 25339441 DOI: 10.1073/Pnas.1404656111  0.538
2014 Zhang Q, Bos J, Tarnopolskiy G, Sturm JC, Kim H, Pourmand N, Austin RH. You cannot tell a book by looking at the cover: Cryptic complexity in bacterial evolution. Biomicrofluidics. 8: 052004. PMID 25332728 DOI: 10.1063/1.4894410  0.453
2014 Wride DA, Pourmand N, Bray WM, Kosarchuk JJ, Nisam SC, Quan TK, Berkeley RF, Katzman S, Hartzog GA, Dobkin CE, Scott Lokey R. Confirmation of the cellular targets of benomyl and rapamycin using next-generation sequencing of resistant mutants in S. cerevisiae. Molecular Biosystems. 10: 3179-87. PMID 25257345 DOI: 10.1039/C4Mb00146J  0.306
2014 Actis P, Maalouf MM, Kim HJ, Lohith A, Vilozny B, Seger RA, Pourmand N. Compartmental genomics in living cells revealed by single-cell nanobiopsy. Acs Nano. 8: 546-53. PMID 24279711 DOI: 10.1021/Nn405097U  0.533
2013 Foye A, Bengtsson H, Kim HJ, Taylor BS, Pourmand N, Febbo PG. Feasibility of RNA sequencing to detect TMPRSS2:ERG fusions following laser capture microdissection of prostate cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 76. PMID 28137101 DOI: 10.1200/Jco.2013.31.6_Suppl.76  0.517
2013 Akhras MS, Pettersson E, Diamond L, Unemo M, Okamoto J, Davis RW, Pourmand N. The Sequencing Bead Array (SBA), a next-generation digital suspension array. Plos One. 8: e76696. PMID 24116138 DOI: 10.1371/Journal.Pone.0076696  0.362
2013 Kim HJ, Pourmand N. HLA typing from RNA-seq data using hierarchical read weighting [corrected]. Plos One. 8: e67885. PMID 23840783 DOI: 10.1371/Journal.Pone.0067885  0.504
2013 Khan SY, Tariq MA, Perrott JP, Brumbaugh CD, Kim HJ, Shabbir MI, Ramesh GT, Pourmand N. Distinctive microRNA expression signatures in proton-irradiated mice Molecular and Cellular Biochemistry. 382: 225-235. PMID 23817773 DOI: 10.1007/S11010-013-1738-Z  0.469
2013 Lopez-Diaz FJ, Lee MW, Tariq MA, Dayn Y, Khan SY, Vaske C, Pourmand N, Emerson BM. Abstract PR05: Single-cell RNA sequencing reveals phenotypic plasticity of drug tolerant clonal populations of cancer cells Cancer Research. 73. DOI: 10.1158/1538-7445.Fbcr13-Pr05  0.588
2013 Yau C, Meyer L, Benz S, Vaske C, Scott G, Egan B, Labhart P, Mitchell E, Pourmand N, Benz C. Abstract 1813: FOXM1 target genes associated with cell cycle regulation predict breast cancer metastatic outcome. Cancer Research. 73: 1813-1813. DOI: 10.1158/1538-7445.Am2013-1813  0.339
2012 Adam Seger R, Actis P, Penfold C, Maalouf M, Vilozny B, Pourmand N. Voltage controlled nano-injection system for single-cell surgery. Nanoscale. 4: 5843-6. PMID 22899383 DOI: 10.1039/C2Nr31700A  0.301
2012 Hyman RW, St Onge RP, Kim H, Tamaresis JS, Miranda M, Aparicio AM, Fukushima M, Pourmand N, Giudice LC, Davis RW. Molecular probe technology detects bacteria without culture. Bmc Microbiology. 12: 29. PMID 22404909 DOI: 10.1186/1471-2180-12-29  0.521
2012 Vaske C, Lee W, Benz S, Sanborn J, Emerson B, Pourmand N, Lopez DF. Abstract P2-06-05: Single-cell RNA sequencing of paclitaxol-treated breast cancer cell lines to find individual cell response Cancer Research. 72. DOI: 10.1158/0008-5472.Sabcs12-P2-06-05  0.354
2012 Actis P, Kan SY, Penfold C, Vilozny B, Pourmand N. Single-Cell Biopsy using Nanopipettes Biophysical Journal. 102: 188a. DOI: 10.1016/J.Bpj.2011.11.1027  0.358
2011 Brumbaugh CD, Kim HJ, Giovacchini M, Pourmand N. NanoStriDE: Normalization and differential expression analysis of NanoString nCounter data Bmc Bioinformatics. 12. PMID 22177214 DOI: 10.1186/1471-2105-12-479  0.515
2011 Zhang Q, Lambert G, Liao D, Kim H, Robin K, Tung CK, Pourmand N, Austin RH. Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments. Science (New York, N.Y.). 333: 1764-7. PMID 21940899 DOI: 10.1126/Science.1208747  0.468
2011 Tariq MA, Kim HJ, Jejelowo O, Pourmand N. Whole-transcriptome RNAseq analysis from minute amount of total RNA. Nucleic Acids Research. 39: e120. PMID 21737426 DOI: 10.1093/Nar/Gkr547  0.526
2011 Olasagasti F, Kim HJ, Pourmand N, Deamer DW. Non-enzymatic transfer of sequence information under plausible prebiotic conditions. Biochimie. 93: 556-61. PMID 21130835 DOI: 10.1016/J.Biochi.2010.11.012  0.516
2011 Seger RA, Actis P, Vilozny B, Pourmand N. Single Cell Sensing and Manipulation by Scanning Nanopore Microscopy Biophysical Journal. 100: 183a. DOI: 10.1016/J.Bpj.2010.12.1219  0.33
2011 Actis P, Seger AR, Vilozny B, Jejelowo O, Pourmand N. Single Cell Immunoassay with Sting Sensors Biophysical Journal. 100: 169a. DOI: 10.1016/J.Bpj.2010.12.1143  0.357
2010 Actis P, Mak AC, Pourmand N. Functionalized nanopipettes: toward label-free, single cell biosensors. Bioanalytical Reviews. 1: 177-185. PMID 20730113 DOI: 10.1007/S12566-010-0013-Y  0.319
2010 Farias-Hesson E, Erikson J, Atkins A, Shen P, Davis RW, Scharfe C, Pourmand N. Semi-automated library preparation for high-throughput DNA sequencing platforms. Journal of Biomedicine & Biotechnology. 2010: 617469. PMID 20625503 DOI: 10.1155/2010/617469  0.347
2010 Smith AM, Heisler LE, St.Onge RP, Farias-Hesson E, Wallace IM, Bodeau J, Harris AN, Perry KM, Giaever G, Pourmand N, Nislow C. Highly-multiplexed barcode sequencing: An efficient method for parallel analysis of pooled samples Nucleic Acids Research. 38: e142-e142. PMID 20460461 DOI: 10.1093/Nar/Gkq368  0.348
2010 Tariq MA, Pourmand N. Template tailoring: Accurate determination of heterozygous alleles using peptide nucleic acid and dideoxyNTP. Electrophoresis. 31: 1322-9. PMID 20408144 DOI: 10.1002/Elps.200900631  0.334
2010 Actis P, Jejelowo O, Pourmand N. Label-Free Immunoassay Based on Functionalized Nanopipette Probes Biophysical Journal. 98: 602a. DOI: 10.1016/J.Bpj.2009.12.3280  0.341
2009 Gorgani N, Ahlbrand S, Patterson A, Pourmand N. Detection of point mutations associated with antibiotic resistance in Pseudomonas aeruginosa. International Journal of Antimicrobial Agents. 34: 414-8. PMID 19656662 DOI: 10.1016/J.Ijantimicag.2009.05.013  0.31
2009 Actis P, Umehara S, Pourmand N, Karhanek M. Nanopipette surface modification for biosensing Biophysical Journal. 96: 646a. DOI: 10.1016/J.Bpj.2008.12.3843  0.318
2008 Osterfeld SJ, Yu H, Gaster RS, Caramuta S, Xu L, Han SJ, Hall DA, Wilson RJ, Sun S, White RL, Davis RW, Pourmand N, Wang SX. Multiplex protein assays based on real-time magnetic nanotag sensing. Proceedings of the National Academy of Sciences of the United States of America. 105: 20637-40. PMID 19074273 DOI: 10.1073/Pnas.0810822105  0.306
2008 Villablanca A, Karhanek M, Caramuta S, Yu H, Jejelowo O, Webb CD, Pourmand N. Suspension bead array branch migration displacement assay for rapid STR analysis. Electrophoresis. 29: 4109-14. PMID 18958881 DOI: 10.1002/Elps.200700866  0.309
2008 Xu L, Yu H, Akhras MS, Han SJ, Osterfeld S, White RL, Pourmand N, Wang SX. Giant magnetoresistive biochip for DNA detection and HPV genotyping. Biosensors & Bioelectronics. 24: 99-103. PMID 18457945 DOI: 10.1016/J.Bios.2008.03.030  0.316
2007 Akhras MS, Unemo M, Thiyagarajan S, Nyrén P, Davis RW, Fire AZ, Pourmand N. Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications. Plos One. 2: e915. PMID 17878950 DOI: 10.1371/Journal.Pone.0000915  0.342
2007 Pourmand N, Caramuta S, Villablanca A, Mori S, Karhanek M, Wang SX, Davis RW. Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 104: 6146-51. PMID 17389407 DOI: 10.1073/Pnas.0700921104  0.309
2007 Akhras MS, Thiyagarajan S, Villablanca AC, Davis RW, Nyrén P, Pourmand N. PathogenMip assay: a multiplex pathogen detection assay. Plos One. 2: e223. PMID 17311101 DOI: 10.1371/Journal.Pone.0000223  0.323
2006 Thiyagarajan S, Karhanek M, Akhras M, Davis RW, Pourmand N. PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens. Bmc Bioinformatics. 7: 500. PMID 17105657 DOI: 10.1186/1471-2105-7-500  0.33
2006 Gharizadeh B, Herman ZS, Eason RG, Jejelowo O, Pourmand N. Large-scale pyrosequencing of synthetic DNA: a comparison with results from Sanger dideoxy sequencing. Electrophoresis. 27: 3042-7. PMID 16800029 DOI: 10.1002/Elps.200500834  0.343
2006 Pourmand N, Karhanek M, Persson HH, Webb CD, Lee TH, Zahradníková A, Davis RW. Direct electrical detection of DNA synthesis. Proceedings of the National Academy of Sciences of the United States of America. 103: 6466-70. PMID 16614066 DOI: 10.1073/Pnas.0601184103  0.309
2006 Gharizadeh B, Akhras M, Nourizad N, Ghaderi M, Yasuda K, Nyrén P, Pourmand N. Methodological improvements of pyrosequencing technology. Journal of Biotechnology. 124: 504-11. PMID 16530870 DOI: 10.1016/J.Jbiotec.2006.01.025  0.34
2005 Gharizadeh B, Akhras M, Unemo M, Wretlind B, Nyrén P, Pourmand N. Detection of gyrA mutations associated with ciprofloxacin resistance in Neisseria gonorrhoeae by rapid and reliable pre-programmed short DNA sequencing. International Journal of Antimicrobial Agents. 26: 486-90. PMID 16274961 DOI: 10.1016/J.Ijantimicag.2005.08.017  0.317
2005 Gharizadeh B, Oggionni M, Zheng B, Akom E, Pourmand N, Ahmadian A, Wallin KL, Nyrén P. Type-specific multiple sequencing primers: a novel strategy for reliable and rapid genotyping of human papillomaviruses by pyrosequencing technology. The Journal of Molecular Diagnostics : Jmd. 7: 198-205. PMID 15858143 DOI: 10.1016/S1525-1578(10)60546-6  0.347
2004 Eason RG, Pourmand N, Tongprasit W, Herman ZS, Anthony K, Jejelowo O, Davis RW, Stolc V. Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains. Proceedings of the National Academy of Sciences of the United States of America. 101: 11046-51. PMID 15258289 DOI: 10.1073/Pnas.0403672101  0.341
2003 Jain M, Thorstenson YR, Faulkner DM, Pourmand N, Jones T, Au M, Oefner PJ, White KP, Davis RW. Genotyping African haplotypes in ATM using a co-spotted single-base extension assay. Human Mutation. 22: 214-21. PMID 12938086 DOI: 10.1002/Humu.10250  0.307
2001 Nordström T, Gharizadeh B, Pourmand N, Nyren P, Ronaghi M. Method enabling fast partial sequencing of cDNA clones Analytical Biochemistry. 292: 266-271. PMID 11355860 DOI: 10.1006/Abio.2001.5094  0.342
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