Christopher Mason - Publications

Affiliations: 
Cornell University, Weill Medical College, Burke Res. Institute, New York, NY, United States 

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Li S, Garrett-Bakelman FE, Chung SS, Sanders MA, Hricik T, Rapaport F, Patel J, Dillon R, Vijay P, Brown AL, Perl AE, Cannon J, Bullinger L, Luger S, Becker M, ... ... Mason CE, et al. Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia. Nature Medicine. PMID 27322744 DOI: 10.1038/Nm.4125  0.36
2016 Li S, Mason C, Melnick A. Genetic and epigenetic heterogeneity in acute myeloid leukemia. Current Opinion in Genetics & Development. 36: 100-106. PMID 27162099 DOI: 10.1016/J.Gde.2016.03.011  0.36
2016 Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. A benchmark for RNA-seq quantification pipelines. Genome Biology. 17: 74. PMID 27107712 DOI: 10.1186/S13059-016-0940-1  0.36
2016 Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, ... ... Mason CE, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/Ncomms10164  0.36
2015 Betel D, Socci ND, Khanin R, Mason CE, Rapaport F. Response to Zhou and Robinson. Genome Biology. 16: 223. PMID 26450418 DOI: 10.1186/s13059-015-0782-2  0.36
2015 Webster AF, Zumbo P, Fostel J, Gandara J, Hester SD, Recio L, Williams A, Wood CE, Yauk CL, Mason CE. Mining the archives: a cross-platform analysis of gene expression profiles in archival formalin-fixed paraffin-embedded (FFPE) tissue. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 26361796 DOI: 10.1093/toxsci/kfv195  0.36
2015 Chhangawala S, Rudy G, Mason CE, Rosenfeld JA. The impact of read length on quantification of differentially expressed genes and splice junction detection. Genome Biology. 16: 131. PMID 26100517 DOI: 10.1186/S13059-015-0697-Y  0.36
2015 Shih AH, Jiang Y, Meydan C, Shank K, Pandey S, Barreyro L, Antony-Debre I, Viale A, Socci N, Sun Y, Robertson A, Cavatore M, de Stanchina E, Hricik T, Rapaport F, ... ... Mason C, et al. Mutational cooperativity linked to combinatorial epigenetic gain of function in acute myeloid leukemia. Cancer Cell. 27: 502-15. PMID 25873173 DOI: 10.1016/J.Ccell.2015.03.009  0.36
2015 Garrett-Bakelman FE, Sheridan CK, Kacmarczyk TJ, Ishii J, Betel D, Alonso A, Mason CE, Figueroa ME, Melnick AM. Enhanced reduced representation bisulfite sequencing for assessment of DNA methylation at base pair resolution. Journal of Visualized Experiments : Jove. e52246. PMID 25742437 DOI: 10.3791/52246  0.36
2015 Hu W, Dooley J, Chung SS, Chandramohan D, Cimmino L, Mukherjee S, Mason CE, de Strooper B, Liston A, Park CY. miR-29a maintains mouse hematopoietic stem cell self-renewal by regulating Dnmt3a. Blood. 125: 2206-16. PMID 25634742 DOI: 10.1182/Blood-2014-06-585273  0.36
2015 Akalin A, Franke V, Vlahoviček K, Mason CE, Schübeler D. Genomation: a toolkit to summarize, annotate and visualize genomic intervals. Bioinformatics (Oxford, England). 31: 1127-9. PMID 25417204 DOI: 10.1093/bioinformatics/btu775  0.36
2015 Peng X, Thierry-Mieg J, Thierry-Mieg D, Nishida A, Pipes L, Bozinoski M, Thomas MJ, Kelly S, Weiss JM, Raveendran M, Muzny D, Gibbs RA, Rogers J, Schroth GP, Katze MG, ... Mason CE, et al. Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR). Nucleic Acids Research. 43: D737-42. PMID 25392405 DOI: 10.1093/Nar/Gku1110  0.36
2014 Dubchak I, Balasubramanian S, Wang S, Meyden C, Sulakhe D, Poliakov A, Börnigen D, Xie B, Taylor A, Ma J, Paciorkowski AR, Mirzaa GM, Dave P, Agam G, Xu J, ... ... Mason CE, et al. An integrative computational approach for prioritization of genomic variants. Plos One. 9: e114903. PMID 25506935 DOI: 10.1371/Journal.Pone.0114903  0.36
2014 Rampal R, Alkalin A, Madzo J, Vasanthakumar A, Pronier E, Patel J, Li Y, Ahn J, Abdel-Wahab O, Shih A, Lu C, Ward PS, Tsai JJ, Hricik T, Tosello V, ... ... Mason CE, et al. DNA hydroxymethylation profiling reveals that WT1 mutations result in loss of TET2 function in acute myeloid leukemia. Cell Reports. 9: 1841-55. PMID 25482556 DOI: 10.1016/J.Celrep.2014.11.004  0.36
2014 Li S, Garrett-Bakelman F, Perl AE, Luger SM, Zhang C, To BL, Lewis ID, Brown AL, D'Andrea RJ, Ross ME, Levine R, Carroll M, Melnick A, Mason CE. Dynamic evolution of clonal epialleles revealed by methclone. Genome Biology. 15: 472. PMID 25260792 DOI: 10.1186/S13059-014-0472-5  0.36
2014 Li S, ?abaj PP, Zumbo P, Sykacek P, Shi W, Shi L, Phan J, Wu PY, Wang M, Wang C, Thierry-Mieg D, Thierry-Mieg J, Kreil DP, Mason CE. Detecting and correcting systematic variation in large-scale RNA sequencing data. Nature Biotechnology. 32: 888-95. PMID 25150837 DOI: 10.1038/nbt.3000  0.36
2014 Li S, Tighe SW, Nicolet CM, Grove D, Levy S, Farmerie W, Viale A, Wright C, Schweitzer PA, Gao Y, Kim D, Boland J, Hicks B, Kim R, Chhangawala S, ... ... Mason CE, et al. Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study. Nature Biotechnology. 32: 915-25. PMID 25150835 DOI: 10.1038/Nbt.2972  0.36
2014 Chiron D, Di Liberto M, Martin P, Huang X, Sharman J, Blecua P, Mathew S, Vijay P, Eng K, Ali S, Johnson A, Chang B, Ely S, Elemento O, Mason CE, et al. Cell-cycle reprogramming for PI3K inhibition overrides a relapse-specific C481S BTK mutation revealed by longitudinal functional genomics in mantle cell lymphoma. Cancer Discovery. 4: 1022-35. PMID 25082755 DOI: 10.1158/2159-8290.CD-14-0098  0.36
2014 Li S, Mason CE. The pivotal regulatory landscape of RNA modifications Annual Review of Genomics and Human Genetics. 15: 127-150. PMID 24898039 DOI: 10.1146/annurev-genom-090413-025405  0.36
2014 Peng X, Pipes L, Xiong H, Green RR, Jones DC, Ruzzo WL, Schroth GP, Mason CE, Palermo RE, Katze MG. Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data. Journal of Medical Primatology. 43: 317-28. PMID 24810475 DOI: 10.1111/Jmp.12125  0.36
2014 Rosenfeld J, Mason C. Response to 'pervasive sequence patents cover the entire human genome' - authors' reply. Genome Medicine. 6: 15. PMID 24764495 DOI: 10.1186/Gm532  0.36
2014 Mason CE, Porter SG, Smith TM. Characterizing multi-omic data in systems biology. Advances in Experimental Medicine and Biology. 799: 15-38. PMID 24292960 DOI: 10.1007/978-1-4614-8778-4_2  0.36
2013 Abdel-Wahab O, Gao J, Adli M, Dey A, Trimarchi T, Chung YR, Kuscu C, Hricik T, Ndiaye-Lobry D, Lafave LM, Koche R, Shih AH, Guryanova OA, Kim E, Li S, ... ... Mason CE, et al. Deletion of Asxl1 results in myelodysplasia and severe developmental defects in vivo. The Journal of Experimental Medicine. 210: 2641-59. PMID 24218140 DOI: 10.1084/Jem.20131141  0.36
2013 Ricarte-Filho JC, Li S, Garcia-Rendueles ME, Montero-Conde C, Voza F, Knauf JA, Heguy A, Viale A, Bogdanova T, Thomas GA, Mason CE, Fagin JA. Identification of kinase fusion oncogenes in post-Chernobyl radiation-induced thyroid cancers. The Journal of Clinical Investigation. 123: 4935-44. PMID 24135138 DOI: 10.1172/Jci69766  0.36
2013 Cameron P, Corne DW, Mason CE, Rosenfeld J. Crowdfunding genomics and bioinformatics. Genome Biology. 14: 134. PMID 24079746 DOI: 10.1186/Gb-2013-14-9-134  0.36
2013 Lu C, Venneti S, Akalin A, Fang F, Ward PS, Dematteo RG, Intlekofer AM, Chen C, Ye J, Hameed M, Nafa K, Agaram NP, Cross JR, Khanin R, Mason CE, et al. Induction of sarcomas by mutant IDH2. Genes & Development. 27: 1986-98. PMID 24065766 DOI: 10.1101/Gad.226753.113  0.36
2013 Rapaport F, Khanin R, Liang Y, Pirun M, Krek A, Zumbo P, Mason CE, Socci ND, Betel D. Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data. Genome Biology. 14: R95. PMID 24020486 DOI: 10.1186/gb-2013-14-9-r95  0.36
2013 Rosenfeld GE, Mercer EJ, Mason CE, Evans T. Small heat shock proteins Hspb7 and Hspb12 regulate early steps of cardiac morphogenesis. Developmental Biology. 381: 389-400. PMID 23850773 DOI: 10.1016/J.Ydbio.2013.06.025  0.36
2013 Li S, Garrett-Bakelman FE, Akalin A, Zumbo P, Levine R, To BL, Lewis ID, Brown AL, D'Andrea RJ, Melnick A, Mason CE. An optimized algorithm for detecting and annotating regional differential methylation. Bmc Bioinformatics. 14: S10. PMID 23735126 DOI: 10.1186/1471-2105-14-S5-S10  0.36
2013 Chiron D, Martin P, Di Liberto M, Huang X, Ely S, Lannutti BJ, Leonard JP, Mason CE, Chen-Kiang S. Induction of prolonged early G1 arrest by CDK4/CDK6 inhibition reprograms lymphoma cells for durable PI3Kδ inhibition through PIK3IP1. Cell Cycle (Georgetown, Tex.). 12: 1892-900. PMID 23676220 DOI: 10.4161/cc.24928  0.36
2013 Rosenfeld JA, Mason CE. Pervasive sequence patents cover the entire human genome. Genome Medicine. 5: 27. PMID 23522065 DOI: 10.1186/Gm431  0.36
2013 Saletore Y, Chen-Kiang S, Mason CE. Novel RNA regulatory mechanisms revealed in the epitranscriptome Rna Biology. 10: 342-346. PMID 23434792 DOI: 10.4161/rna.23812  0.36
2013 Meyer JA, Wang J, Hogan LE, Yang JJ, Dandekar S, Patel JP, Tang Z, Zumbo P, Li S, Zavadil J, Levine RL, Cardozo T, Hunger SP, Raetz EA, Evans WE, ... ... Mason CE, et al. Relapse-specific mutations in NT5C2 in childhood acute lymphoblastic leukemia. Nature Genetics. 45: 290-4. PMID 23377183 DOI: 10.1038/Ng.2558  0.36
2013 Pan X, Durrett RE, Zhu H, Tanaka Y, Li Y, Zi X, Marjani SL, Euskirchen G, Ma C, Lamotte RH, Park IH, Snyder MP, Mason CE, Weissman SM. Two methods for full-length RNA sequencing for low quantities of cells and single cells. Proceedings of the National Academy of Sciences of the United States of America. 110: 594-9. PMID 23267071 DOI: 10.1073/Pnas.1217322109  0.36
2013 Pipes L, Li S, Bozinoski M, Palermo R, Peng X, Blood P, Kelly S, Weiss JM, Thierry-Mieg J, Thierry-Mieg D, Zumbo P, Chen R, Schroth GP, Mason CE, Katze MG. The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics. Nucleic Acids Research. 41: D906-14. PMID 23203872 DOI: 10.1093/Nar/Gks1268  0.36
2012 Saletore Y, Meyer K, Korlach J, Vilfan ID, Jaffrey S, Mason CE. The birth of the Epitranscriptome: deciphering the function of RNA modifications. Genome Biology. 13: 175. PMID 23113984 DOI: 10.1186/Gb-2012-13-10-175  0.36
2012 Akalin A, Kormaksson M, Li S, Garrett-Bakelman FE, Figueroa ME, Melnick A, Mason CE. methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles. Genome Biology. 13: R87. PMID 23034086 DOI: 10.1186/Gb-2012-13-10-R87  0.36
2012 Busque L, Patel JP, Figueroa ME, Vasanthakumar A, Provost S, Hamilou Z, Mollica L, Li J, Viale A, Heguy A, Hassimi M, Socci N, Bhatt PK, Gonen M, Mason CE, et al. Recurrent somatic TET2 mutations in normal elderly individuals with clonal hematopoiesis. Nature Genetics. 44: 1179-81. PMID 23001125 DOI: 10.1038/Ng.2413  0.36
2012 Rosenfeld JA, Mason CE, Smith TM. Limitations of the human reference genome for personalized genomics. Plos One. 7: e40294. PMID 22811759 DOI: 10.1371/Journal.Pone.0040294  0.36
2012 Akalin A, Garrett-Bakelman FE, Kormaksson M, Busuttil J, Zhang L, Khrebtukova I, Milne TA, Huang Y, Biswas D, Hess JL, Allis CD, Roeder RG, Valk PJ, Löwenberg B, Delwel R, ... ... Mason CE, et al. Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia. Plos Genetics. 8: e1002781. PMID 22737091 DOI: 10.1371/Journal.Pgen.1002781  0.36
2012 Meyer KD, Saletore Y, Zumbo P, Elemento O, Mason CE, Jaffrey SR. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell. 149: 1635-46. PMID 22608085 DOI: 10.1016/J.Cell.2012.05.003  0.36
2012 Griesi-Oliveira K, Moreira Dde P, Davis-Wright N, Sanders S, Mason C, Orabona GM, Vadasz E, Bertola DR, State MW, Passos-Bueno MR. A complex chromosomal rearrangement involving chromosomes 2, 5, and X in autism spectrum disorder. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 159: 529-36. PMID 22592906 DOI: 10.1002/Ajmg.B.32059  0.36
2012 Mason CE, Elemento O. Faster sequencers, larger datasets, new challenges Genome Biology. 13: 314. PMID 22452984 DOI: 10.1186/gb4008  0.36
2012 Fuentes Fajardo KV, Adams D, Mason CE, Sincan M, Tifft C, Toro C, Boerkoel CF, Gahl W, Markello T. Detecting false-positive signals in exome sequencing. Human Mutation. 33: 609-13. PMID 22294350 DOI: 10.1002/Humu.22033  0.36
2012 Weiss J, Hurley LA, Harris RM, Finlayson C, Tong M, Fisher LA, Moran JL, Beier DR, Mason C, Jameson JL. ENU mutagenesis in mice identifies candidate genes for hypogonadism. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 346-55. PMID 22258617 DOI: 10.1007/S00335-011-9388-5  0.36
2012 Perry GH, Reeves D, Melsted P, Ratan A, Miller W, Michelini K, Louis EE, Pritchard JK, Mason CE, Gilad Y. A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar. Genome Biology and Evolution. 4: 126-35. PMID 22155688 DOI: 10.1093/Gbe/Evr132  0.36
2011 Sanders SJ, Ercan-Sencicek AG, Hus V, Luo R, Murtha MT, Moreno-De-Luca D, Chu SH, Moreau MP, Gupta AR, Thomson SA, Mason CE, Bilguvar K, Celestino-Soper PB, Choi M, Crawford EL, et al. Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism. Neuron. 70: 863-85. PMID 21658581 DOI: 10.1016/J.Neuron.2011.05.002  0.36
2010 Mason CE, Zumbo P, Sanders S, Folk M, Robinson D, Aydt R, Gollery M, Welsh M, Olson NE, Smith TM. Standardizing the next generation of bioinformatics software development with BioHDF (HDF5). Advances in Experimental Medicine and Biology. 680: 693-700. PMID 20865556 DOI: 10.1007/978-1-4419-5913-3_77  0.36
2010 Ercan-Sencicek AG, Stillman AA, Ghosh AK, Bilguvar K, O'Roak BJ, Mason CE, Abbott T, Gupta A, King RA, Pauls DL, Tischfield JA, Heiman GA, Singer HS, Gilbert DL, Hoekstra PJ, et al. L-histidine decarboxylase and Tourette's syndrome. The New England Journal of Medicine. 362: 1901-8. PMID 20445167 DOI: 10.1056/Nejmoa0907006  0.36
2010 Mason CE, Shu FJ, Wang C, Session RM, Kallen RG, Sidell N, Yu T, Liu MH, Cheung E, Kallen CB. Location analysis for the estrogen receptor-alpha reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements. Nucleic Acids Research. 38: 2355-68. PMID 20047966 DOI: 10.1093/nar/gkp1188  0.36
2009 Bilguvar K, Ozturk AK, Bayrakli F, Guzel A, DiLuna ML, Bayri Y, Tatli M, Tekes S, Arlier Z, Yasuno K, Mason CE, Lifton RP, State MW, Gunel M. The syndrome of pachygyria, mental retardation, and arachnoid cysts maps to 11p15. American Journal of Medical Genetics. Part A. 149: 2569-72. PMID 19876906 DOI: 10.1002/Ajmg.A.33063  0.36
2009 Bayrakli F, Guney I, Bayri Y, Ercan-Sencicek AG, Ceyhan D, Cankaya T, Mason C, Bilguvar K, Bayrakli S, Mane SM, State MW, Gunel M. A novel heterozygous deletion within the 3' region of the PAX6 gene causing isolated aniridia in a large family group. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 16: 1610-4. PMID 19793656 DOI: 10.1016/J.Jocn.2009.03.022  0.36
2009 Johnson MB, Kawasawa YI, Mason CE, Krsnik Z, Coppola G, Bogdanovi? D, Geschwind DH, Mane SM, State MW, Sestan N. Functional and evolutionary insights into human brain development through global transcriptome analysis. Neuron. 62: 494-509. PMID 19477152 DOI: 10.1016/J.Neuron.2009.03.027  0.36
2009 Gauhar Z, Sun LV, Hua S, Mason CE, Fuchs F, Li TR, Boutros M, White KP. Genomic mapping of binding regions for the Ecdysone receptor protein complex. Genome Research. 19: 1006-13. PMID 19237466 DOI: 10.1101/Gr.081349.108  0.36
2008 Bilguvar K, Yasuno K, Niemelä M, Ruigrok YM, von Und Zu Fraunberg M, van Duijn CM, van den Berg LH, Mane S, Mason CE, Choi M, Gaál E, Bayri Y, Kolb L, Arlier Z, Ravuri S, et al. Susceptibility loci for intracranial aneurysm in European and Japanese populations. Nature Genetics. 40: 1472-7. PMID 18997786 DOI: 10.1038/Ng.240  0.36
2008 Fernandez TV, García-González IJ, Mason CE, Hernández-Zaragoza G, Ledezma-Rodríguez VC, Anguiano-Alvarez VM, E'Vega R, Gutiérrez-Angulo M, Maya ML, García-Bejarano HE, González-Cruz M, Barrios S, Atorga R, López-Cardona MG, Armendariz-Borunda J, et al. Molecular characterization of a patient with 3p deletion syndrome and a review of the literature. American Journal of Medical Genetics. Part A. 146: 2746-52. PMID 18837054 DOI: 10.1002/Ajmg.A.32533  0.36
2008 Vicario S, Mason CE, White KP, Powell JR. Developmental stage and level of codon usage bias in Drosophila. Molecular Biology and Evolution. 25: 2269-77. PMID 18755761 DOI: 10.1093/Molbev/Msn189  0.36
2008 Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Research. 18: 1509-17. PMID 18550803 DOI: 10.1101/Gr.079558.108  0.36
2008 Tüysüz B, Bayrakli F, DiLuna ML, Bilguvar K, Bayri Y, Yalcinkaya C, Bursali A, Ozdamar E, Korkmaz B, Mason CE, Ozturk AK, Lifton RP, State MW, Gunel M. Novel NTRK1 mutations cause hereditary sensory and autonomic neuropathy type IV: demonstration of a founder mutation in the Turkish population. Neurogenetics. 9: 119-25. PMID 18322713 DOI: 10.1007/S10048-008-0121-9  0.36
2008 Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 407: 199-215. PMID 17996400 DOI: 10.1016/J.Gene.2007.10.012  0.36
2007 Bilguvar K, Bydon M, Bayrakli F, Ercan-Sencicek AG, Bayri Y, Mason C, DiLuna ML, Seashore M, Bronen R, Lifton RP, State M, Gunel M. A novel syndrome of cerebral cavernous malformation and Greig cephalopolysyndactyly: Laboratory investigation Journal of Neurosurgery. 107: 495-499. PMID 18154020 DOI: 10.3171/Ped-07/12/495  0.36
2007 Bayrakli F, Bilguvar K, Mason CE, DiLuna ML, Bayri Y, Gungor L, Terzi M, Mane SM, Lifton RP, State MW, Gunel M. Rapid identification of disease-causing mutations using copy number analysis within linkage intervals. Human Mutation. 28: 1236-40. PMID 17676595 DOI: 10.1002/Humu.20592  0.36
2003 Malehorn DE, Telmer CA, McEwen SB, An J, Kinsey AD, Retchless AC, Mason C, Vieta WM, Jarvik JW. Detection of cystic fibrosis mutations by peptide mass signature genotyping. Clinical Chemistry. 49: 1318-30. PMID 12881448 DOI: 10.1373/49.8.1318  0.36
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