| Year |
Citation |
Score |
| 2019 |
Ripoll DR, Wallqvist A, Chaudhury S. Molecular Simulations Reveal the Role of Antibody Fine Specificity and Viral Maturation State on Antibody-Dependent Enhancement of Infection in Dengue Virus. Frontiers in Cellular and Infection Microbiology. 9: 200. PMID 31275864 DOI: 10.3389/Fcimb.2019.00200 |
0.31 |
|
| 2017 |
Ripoll DR, Mitchell DAJ, Dupuy LC, Wallqvist A, Schmaljohn C, Chaudhury S. Combinatorial peptide-based epitope mapping from Ebola virus DNA vaccines and infections reveals residue-level determinants of antibody binding. Human Vaccines & Immunotherapeutics. 0. PMID 28922082 DOI: 10.1080/21645515.2017.1360454 |
0.37 |
|
| 2017 |
Chaudhury S, Regules JA, Darko CA, Dutta S, Wallqvist A, Waters NC, Jongert E, Lemiale F, Bergmann-Leitner ES. Delayed fractional dose regimen of the RTS,S/AS01 malaria vaccine candidate enhances an IgG4 response that inhibits serum opsonophagocytosis. Scientific Reports. 7: 7998. PMID 28801554 DOI: 10.1038/S41598-017-08526-5 |
0.319 |
|
| 2017 |
Mitchell DAJ, Dupuy LC, Sanchez-Lockhart M, Palacios G, Back JW, Shimanovskaya K, Chaudhury S, Ripoll DR, Wallqvist A, Schmaljohn CS. Epitope mapping of Ebola virus dominant and subdominant glycoprotein epitopes facilitates construction of an epitope-based DNA vaccine able to focus the antibody response in mice. Human Vaccines & Immunotherapeutics. 0. PMID 28699812 DOI: 10.1080/21645515.2017.1347740 |
0.346 |
|
| 2016 |
Lee DW, Khavrutskii IV, Wallqvist A, Bavari S, Cooper CL, Chaudhury S. BRILIA: Integrated Tool for High-Throughput Annotation and Lineage Tree Assembly of B-Cell Repertoires. Frontiers in Immunology. 7: 681. PMID 28144239 DOI: 10.3389/Fimmu.2016.00681 |
0.321 |
|
| 2016 |
Ripoll DR, Khavrutskii I, Wallqvist A, Chaudhury S. Modeling the Role of Epitope Arrangement on Antibody Binding Stoichiometry in Flaviviruses. Biophysical Journal. 111: 1641-1654. PMID 27760352 DOI: 10.1016/J.Bpj.2016.09.003 |
0.397 |
|
| 2016 |
Chaudhury S, Ockenhouse CF, Regules JA, Dutta S, Wallqvist A, Jongert E, Waters NC, Lemiale F, Bergmann-Leitner E. The biological function of antibodies induced by the RTS,S/AS01 malaria vaccine candidate is determined by their fine specificity. Malaria Journal. 15: 301. PMID 27245446 DOI: 10.1186/S12936-016-1348-9 |
0.327 |
|
| 2015 |
Chaudhury S, Ripoll DR, Wallqvist A. Structure-based pKa prediction provides a thermodynamic basis for the role of histidines in pH-induced conformational transitions in dengue virus. Biochemistry and Biophysics Reports. 4: 375-385. PMID 29124227 DOI: 10.1016/J.Bbrep.2015.10.014 |
0.382 |
|
| 2015 |
Loers G, Saini V, Mishra B, Gul S, Chaudhury S, Wallqvist A, Kaur G, Schachner M. Vinorelbine and epirubicin share common features with polysialic acid and modulate neuronal and glial functions. Journal of Neurochemistry. PMID 26443186 DOI: 10.1111/Jnc.13383 |
0.338 |
|
| 2014 |
Chaudhury S, Reifman J, Wallqvist A. Simulation of B cell affinity maturation explains enhanced antibody cross-reactivity induced by the polyvalent malaria vaccine AMA1. Journal of Immunology (Baltimore, Md. : 1950). 193: 2073-86. PMID 25080483 DOI: 10.4049/Jimmunol.1401054 |
0.327 |
|
| 2014 |
Munagala S, Sirasani G, Kokkonda P, Phadke M, Krynetskaia N, Lu P, Sharom FJ, Chaudhury S, Abdulhameed MD, Tawa G, Wallqvist A, Martinez R, Childers W, Abou-Gharbia M, Krynetskiy E, et al. Synthesis and evaluation of Strychnos alkaloids as MDR reversal agents for cancer cell eradication. Bioorganic & Medicinal Chemistry. 22: 1148-55. PMID 24405813 DOI: 10.1016/J.Bmc.2013.12.022 |
0.312 |
|
| 2013 |
Bergmann-Leitner ES, Chaudhury S, Steers NJ, Sabato M, Delvecchio V, Wallqvist AS, Ockenhouse CF, Angov E. Computational and experimental validation of B and T-cell epitopes of the in vivo immune response to a novel malarial antigen. Plos One. 8: e71610. PMID 23977087 DOI: 10.1371/Journal.Pone.0071610 |
0.402 |
|
| 2013 |
Chaudhury S, Abdulhameed MD, Singh N, Tawa GJ, D'haeseleer PM, Zemla AT, Navid A, Zhou CE, Franklin MC, Cheung J, Rudolph MJ, Love J, Graf JF, Rozak DA, Dankmeyer JL, et al. Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction. Plos One. 8: e63369. PMID 23704901 DOI: 10.1371/Journal.Pone.0063369 |
0.37 |
|
| 2012 |
Chaudhury S, Olson MA, Tawa G, Wallqvist A, Lee MS. Efficient Conformational Sampling in Explicit Solvent Using a Hybrid Replica Exchange Molecular Dynamics Method. Journal of Chemical Theory and Computation. 8: 677-87. PMID 26596615 DOI: 10.1021/Ct200529B |
0.328 |
|
| 2012 |
Singh N, Chaudhury S, Liu R, AbdulHameed MD, Tawa G, Wallqvist A. QSAR classification model for antibacterial compounds and its use in virtual screening. Journal of Chemical Information and Modeling. 52: 2559-69. PMID 23013546 DOI: 10.1021/Ci300336V |
0.332 |
|
| 2012 |
Ripoll DR, Khavrutskii IV, Chaudhury S, Liu J, Kuschner RA, Wallqvist A, Reifman J. Quantitative predictions of binding free energy changes in drug-resistant influenza neuraminidase. Plos Computational Biology. 8: e1002665. PMID 22956900 DOI: 10.1371/Journal.Pcbi.1002665 |
0.334 |
|
| 2012 |
Singh N, Sun H, Chaudhury S, Abdulhameed MD, Wallqvist A, Tawa G. A physicochemical descriptor-based scoring scheme for effective and rapid filtering of kinase-like chemical space. Journal of Cheminformatics. 4: 4. PMID 22316383 DOI: 10.1186/1758-2946-4-4 |
0.308 |
|
| 2012 |
AbdulHameed MD, Chaudhury S, Singh N, Sun H, Wallqvist A, Tawa GJ. Exploring polypharmacology using a ROCS-based target fishing approach. Journal of Chemical Information and Modeling. 52: 492-505. PMID 22196353 DOI: 10.1021/Ci2003544 |
0.49 |
|
| 2011 |
Chaudhury S, Berrondo M, Weitzner BD, Muthu P, Bergman H, Gray JJ. Benchmarking and analysis of protein docking performance in Rosetta v3.2. Plos One. 6: e22477. PMID 21829626 DOI: 10.1371/Journal.Pone.0022477 |
0.727 |
|
| 2011 |
Olson MA, Chaudhury S, Lee MS. Comparison between self-guided Langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations. Journal of Computational Chemistry. 32: 3014-22. PMID 21793008 DOI: 10.1002/Jcc.21883 |
0.463 |
|
| 2010 |
Sircar A, Chaudhury S, Kilambi KP, Berrondo M, Gray JJ. A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19 Proteins: Structure, Function and Bioinformatics. 78: 3115-3123. PMID 20535822 DOI: 10.1002/Prot.22765 |
0.667 |
|
| 2010 |
Chaudhury S, Lyskov S, Gray JJ. PyRosetta: A script-based interface for implementing molecular modeling algorithms using Rosetta Bioinformatics. 26: 689-691. PMID 20061306 DOI: 10.1093/Bioinformatics/Btq007 |
0.596 |
|
| 2009 |
Chaudhury S, Gray JJ. Identification of Structural Mechanisms of HIV-1 Protease Specificity Using Computational Peptide Docking: Implications for Drug Resistance Structure. 17: 1636-1648. PMID 20004167 DOI: 10.1016/J.Str.2009.10.008 |
0.542 |
|
| 2009 |
Sivasubramanian A, Sircar A, Chaudhury S, Gray JJ. Toward high-resolution homology modeling of antibody F v regions and application to antibody-antigen docking Proteins: Structure, Function and Bioinformatics. 74: 497-514. PMID 19062174 DOI: 10.1002/Prot.22309 |
0.721 |
|
| 2008 |
Chaudhury S, Gray JJ. Conformer Selection and Induced Fit in Flexible Backbone Protein-Protein Docking Using Computational and NMR Ensembles Journal of Molecular Biology. 381: 1068-1087. PMID 18640688 DOI: 10.1016/J.Jmb.2008.05.042 |
0.678 |
|
| 2008 |
Pickin KA, Chaudhury S, Dancy BCR, Gray JJ, Cole PA. Analysis of protein kinase autophosphorylation using expressed protein ligation and computational modeling Journal of the American Chemical Society. 130: 5667-5669. PMID 18396877 DOI: 10.1021/Ja711244H |
0.537 |
|
| 2007 |
Chaudhury S, Sircar A, Sivasubramanian A, Berrondo M, Gray JJ. Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12 Proteins: Structure, Function and Genetics. 69: 793-800. PMID 17894347 DOI: 10.1002/Prot.21731 |
0.671 |
|
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