Gordon D. Ginder, M.D. - Related publications

Human Genetics Virginia Commonwealth University, Richmond, VA, United States 
Molecular Biology, Genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Levy O, Amit G, Vaknin D, Snir T, Efroni S, Castaldi P, Liu YY, Cohen HY, Bashan A. Age-related loss of gene-to-gene transcriptional coordination among single cells. Nature Metabolism. PMID 33139959 DOI: 10.1038/s42255-020-00304-4   
2020 An SY, Lee M, Yoon HK, Abekura F, Kim KS, Kim DH, Kim HJ, Lee K, Kim CH, Lee YC. Regulation of human β-galactoside α2,6-sialyltransferase (hST6Gal I) gene expression during differentiation of human osteoblastic MG-63 cells. Glycoconjugate Journal. PMID 33108606 DOI: 10.1007/s10719-020-09959-3   
2020 Bandekar AC, Subedi S, Ioerger TR, Sassetti CM. Cell-Cycle-Associated Expression Patterns Predict Gene Function in Mycobacteria. Current Biology : Cb. PMID 32916109 DOI: 10.1016/j.cub.2020.07.070   
2020 Tsai A, Galupa R, Crocker J. Robust and efficient gene regulation through localized nuclear microenvironments. Development (Cambridge, England). 147. PMID 33020073 DOI: 10.1242/dev.161430   
2020 Tarbier M, Mackowiak SD, Frade J, Catuara-Solarz S, Biryukova I, Gelali E, Menéndez DB, Zapata L, Ossowski S, Bienko M, Gallant CJ, Friedländer MR. Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells. Nature Communications. 11: 5445. PMID 33116115 DOI: 10.1038/s41467-020-19011-5   
2020 Zhou J, Zhao CC, Wu X, Shi JS, Zhou R, Wu ZF, Li ZC. Transcriptome heterogeneity of porcine ear fibroblast and its potential influence on embryo development in nuclear transplantation. Yi Chuan = Hereditas. 42: 898-915. PMID 32952124 DOI: 10.16288/j.yczz.20-190   
2020 Brown JC. Involvement of promoter/enhancers in a feedback loop to regulate human gene expression. Heliyon. 6: e04934. PMID 32995621 DOI: 10.1016/j.heliyon.2020.e04934   
2020 N'Diaye A, Byrns B, Cory AT, Nilsen KT, Walkowiak S, Sharpe A, Robinson SJ, Pozniak CJ. Machine learning analyses of methylation profiles uncovers tissue-specific gene expression patterns in wheat. The Plant Genome. 13: e20027. PMID 33016606 DOI: 10.1002/tpg2.20027   
2020 Xu H, Wang J, Liang Y, Fu Y, Li S, Huang J, Xu H, Zou W, Chen B. TriTag: an integrative tool to correlate chromatin dynamics and gene expression in living cells. Nucleic Acids Research. PMID 33104788 DOI: 10.1093/nar/gkaa906   
2020 Hallikas O, Das Roy R, Christensen MM, Renvoisé E, Sulic AM, Jernvall J. System-level analyses of keystone genes required for mammalian tooth development. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 33128445 DOI: 10.1002/jez.b.23009   
2020 Jasenosky LD, Nambu A, Tsytsykova AV, Ranjbar S, Haridas V, Kruidenier L, Tough DF, Goldfeld AE. Identification of a Distal Locus Enhancer Element That Controls Cell Type-Specific and Gene Expression in Human T Cells. Journal of Immunology (Baltimore, Md. : 1950). PMID 32978279 DOI: 10.4049/jimmunol.1901311   
2020 Quan FS, Kong HH, Lee HA, Chu KB, Moon EK. Identification of differentially expressed genes during its intracellular growth in . Heliyon. 6: e05238. PMID 33088972 DOI: 10.1016/j.heliyon.2020.e05238   
2020 Kang M, Lee S, Lee D, Kim S. Learning Cell-Type-Specific Gene Regulation Mechanisms by Multi-Attention Based Deep Learning With Regulatory Latent Space. Frontiers in Genetics. 11: 869. PMID 33133123 DOI: 10.3389/fgene.2020.00869   
2020 Modesto P, Fernandez JLC, Martini I, Zoccola R, Pugliano MC, Ciucis CG, Goria M, Ferrari A, Razzuoli E. Characterization of D-17 Canine Osteosarcoma Cell Line and Evaluation of Its Ability to Response to Infective Stressor Used as Alternative Anticancer Therapy. Animals : An Open Access Journal From Mdpi. 10. PMID 33126659 DOI: 10.3390/ani10111981   
2020 Banupriya N, Bhat BV, Vickneshwaran V, Sridhar MG. Effect of zinc supplementation on relative expression of immune response genes in neonates with sepsis: A preliminary study. The Indian Journal of Medical Research. 152: 296-302. PMID 33107490 DOI: 10.4103/ijmr.IJMR_557_18   
2020 Tu Z, Shen Y, Wen S, Zong Y, Li H. Alternative Splicing Enhances the Transcriptome Complexity of . Frontiers in Plant Science. 11: 578100. PMID 33072153 DOI: 10.3389/fpls.2020.578100   
2020 Kong N, Jung I. Long-range chromatin interactions in pathogenic gene expression control. Transcription. 1-6. PMID 33151112 DOI: 10.1080/21541264.2020.1843958   
2020 Adlat S, Sah RK, Hayel F, Chen Y, Bah FB, Al-Azab M, Bahadar N, Myint M, Oo ZM, Nasser MI, Zhang L, Feng X, Zheng Y. Global transcriptome study of Dip2B-deficient mouse embryonic lung fibroblast reveals its important roles in cell proliferation and development. Computational and Structural Biotechnology Journal. 18: 2381-2390. PMID 33005301 DOI: 10.1016/j.csbj.2020.08.030   
2020 Ma S, Zhang B, LaFave LM, Earl AS, Chiang Z, Hu Y, Ding J, Brack A, Kartha VK, Tay T, Law T, Lareau C, Hsu YC, Regev A, Buenrostro JD. Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin. Cell. PMID 33098772 DOI: 10.1016/j.cell.2020.09.056   
2020 Brown CY, Sadlon T, Hope CM, Wong YY, Wong S, Liu N, Withers H, Brown K, Bandara V, Gundsambuu B, Pederson S, Breen J, Robertson SA, Forrest A, Beyer M, et al. Molecular Insights Into Regulatory T-Cell Adaptation to Self, Environment, and Host Tissues: Plasticity or Loss of Function in Autoimmune Disease. Frontiers in Immunology. 11: 1269. PMID 33072063 DOI: 10.3389/fimmu.2020.01269   
2020 Díez-Villanueva A, Sanz-Pamplona R, Carreras-Torres R, Moratalla-Navarro F, Alonso MH, Paré-Brunet L, Aussó S, Guinó E, Solé X, Cordero D, Salazar R, Berdasco M, Peinado MA, Moreno V. DNA methylation events in transcription factors and gene expression changes in colon cancer. Epigenomics. 12: 1593-1610. PMID 32957849 DOI: 10.2217/epi-2020-0029   
2020 Díez-Villanueva A, Sanz-Pamplona R, Carreras-Torres R, Moratalla-Navarro F, Alonso MH, Paré-Brunet L, Aussó S, Guinó E, Solé X, Cordero D, Salazar R, Berdasco M, Peinado MA, Moreno V. DNA methylation events in transcription factors and gene expression changes in colon cancer. Epigenomics. 12: 1593-1610. PMID 32957849 DOI: 10.2217/epi-2020-0029   
2020 Fazal Z, Singh R, Fang F, Bikorimana E, Baldwin H, Corbet A, Tomlin M, Yerby C, Adra N, Albany C, Lee S, Freemantle SJ, Nephew KP, Christensen BC, Spinella MJ. Hypermethylation and global remodelling of DNA methylation is associated with acquired cisplatin resistance in testicular germ cell tumours. Epigenetics. 1-14. PMID 33126827 DOI: 10.1080/15592294.2020.1834926   
2020 Jain N, Nitisa D, Pirsko V, Cakstina I. Selecting suitable reference genes for qPCR normalization: a comprehensive analysis in MCF-7 breast cancer cell line. Bmc Molecular and Cell Biology. 21: 68. PMID 32977762 DOI: 10.1186/s12860-020-00313-x   
2020 Gómez-Saldivar G, Osuna-Luque J, Semple JI, Glauser DA, Jarriault S, Meister P. Tissue-Specific Transcription Footprinting Using NoI Dam (RAPID) in . Genetics. PMID 33037050 DOI: 10.1534/genetics.120.303774   
2020 Vangala P, Murphy R, Quinodoz SA, Gellatly K, McDonel P, Guttman M, Garber M. High-Resolution Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen Detection. Molecular Cell. PMID 32991830 DOI: 10.1016/j.molcel.2020.09.005   
2020 Polkoff KM, Chung J, Simpson SG, Gleason K, Piedrahita JA. Validation of Transgene Expression in Gene-Edited Pigs Using CRISPR Transcriptional Activators. The Crispr Journal. 3: 409-418. PMID 33095051 DOI: 10.1089/crispr.2020.0037   
2020 Gouveia GR, Ferreira SC, Siqueira SAC, de Pádua Covas Lage LA, Hallack Neto AE, de Oliveira Costa R, Pereira J. Overexpression of OCT-1 gene is a biomarker of adverse prognosis for diffuse large B-cell lymphoma (DLBCL): data from a retrospective cohort of 77 Brazilian patients. Bmc Cancer. 20: 1041. PMID 33121489 DOI: 10.1186/s12885-020-07553-2   
2020 Yousuf M, Iuliani I, Veetil RT, Seshasayee ASN, Sclavi B, Cosentino Lagomarsino M. Early fate of exogenous promoters in E. coli. Nucleic Acids Research. 48: 2348-2356. PMID 31960057 DOI: 10.1093/nar/gkz1196   
2020 Ziegler N, Bader E, Epanchintsev A, Margerie D, Kannt A, Schmoll D. AMPKβ1 and AMPKβ2 define an isoform-specific gene signature in human pluripotent stem cells, differentially mediating cardiac lineage specification. The Journal of Biological Chemistry. PMID 33067322 DOI: 10.1074/jbc.RA120.013990   
2020 Kirtana R, Manna S, Patra SK. Molecular mechanisms of KDM5A in cellular functions: Facets during development and disease. Experimental Cell Research. 112314. PMID 33010254 DOI: 10.1016/j.yexcr.2020.112314   
2020 Kirtana R, Manna S, Patra SK. Molecular mechanisms of KDM5A in cellular functions: Facets during development and disease. Experimental Cell Research. 112314. PMID 33010254 DOI: 10.1016/j.yexcr.2020.112314   
2020 Tung KF, Pan CY, Chen CH, Lin WC. Top-ranked expressed gene transcripts of human protein-coding genes investigated with GTEx dataset. Scientific Reports. 10: 16245. PMID 33004865 DOI: 10.1038/s41598-020-73081-5   
2020 Bui TT, Lee D, Selvarajoo K. ScatLay: utilizing transcriptome-wide noise for identifying and visualizing differentially expressed genes. Scientific Reports. 10: 17483. PMID 33060728 DOI: 10.1038/s41598-020-74564-1   
2020 Cabrera-Mendoza B, Martínez-Magaña JJ, Genis-Mendoza AD, Monroy-Jaramillo N, Walss-Bass C, Fries GR, García-Dolores F, López-Armenta M, Flores G, Vázquez-Roque RA, Nicolini H. Brain Gene Expression-DNA Methylation Correlation in Suicide Completers: Preliminary Results. Revista De Investigacion Clinica; Organo Del Hospital De Enfermedades De La Nutricion. 73. PMID 33057323 DOI: 10.24875/RIC.19003250   
2020 Deschepper CF. Regulatory effects of the Uty/Ddx3y locus on neighboring chromosome Y genes and autosomal mRNA transcripts in adult mouse non-reproductive cells. Scientific Reports. 10: 14900. PMID 32913328 DOI: 10.1038/s41598-020-71447-3   
2020 Chen W, Zhang X, Bi K, Zhou H, Xu J, Dai Y, Diao H. Comprehensive Study of Tumor Immune Microenvironment and Relevant Genes in Hepatocellular Carcinoma Identifies Potential Prognostic Significance. Frontiers in Oncology. 10: 554165. PMID 33072579 DOI: 10.3389/fonc.2020.554165   
2020 Men S, Yu Y. Prospects for Use of Single-Cell Sequencing to Assess DNA Methylation in Asthma. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 26: e925514. PMID 33009362 DOI: 10.12659/MSM.925514   
2020 Wang Z, Sheng C, Kan G, Yao C, Geng R, Chen S. RNAi Screening Identifies that TEX10 Promotes the Proliferation of Colorectal Cancer Cells by Increasing NF-B Activation. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 7: 2000593. PMID 32995120 DOI: 10.1002/advs.202000593   
2020 Xu PC, He WF, Cheng B. [Exploration of the mechanism of human platelet-rich plasma in regulating and controlling human epidermal stem cells for promoting wound re-epithelialization at transcriptome level]. Zhonghua Shao Shang Za Zhi = Zhonghua Shaoshang Zazhi = Chinese Journal of Burns. 36: 915-922. PMID 33105943 DOI: 10.3760/cma.j.cn501120-20200707-00341   
2020 Li L, Li Y, Timothy Sembiring Meliala I, Kasim V, Wu S. Biological roles of Yin Yang 2: Its implications in physiological and pathological events. Journal of Cellular and Molecular Medicine. PMID 32969187 DOI: 10.1111/jcmm.15919   
2020 Zhang X, Xiang Y, He D, Liang B, Wang C, Luo J, Zheng F. Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data. Frontiers in Genetics. 11: 778. PMID 33033488 DOI: 10.3389/fgene.2020.00778   
2020 Peng L, Li EM, Xu LY. From start to end: phase separation and transcriptional regulation. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194641. PMID 33017669 DOI: 10.1016/j.bbagrm.2020.194641   
2020 Luo H, Lin Y, Liu T, Lai FL, Zhang CT, Gao F, Zhang R. DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools. Nucleic Acids Research. PMID 33095861 DOI: 10.1093/nar/gkaa917   
2020 Terzi Cizmecioglu N, Huang J, Keskin EG, Wang X, Esen I, Chen F, Orkin SH. Arid4b is critical for mouse embryonic stem cell differentiation towards mesoderm and endoderm, linking epigenetics to pluripotency exit. The Journal of Biological Chemistry. PMID 33060200 DOI: 10.1074/jbc.RA120.015534   
2020 Charest J, Daniele T, Wang J, Bykov A, Mandlbauer A, Asparuhova M, Röhsner J, Gutiérrez-Pérez P, Cochella L. Combinatorial Action of Temporally Segregated Transcription Factors. Developmental Cell. PMID 33002421 DOI: 10.1016/j.devcel.2020.09.002   
2020 Macharia TN, Bellieny-Rabelo D, Moleleki LN. Transcriptome Profiling of Potato ( L.) Responses to Root-Knot Nematode () Infestation during A Compatible Interaction. Microorganisms. 8. PMID 32967109 DOI: 10.3390/microorganisms8091443   
2020 Wang L, Qiao H. Chromatin regulation in plant hormone and plant stress responses. Current Opinion in Plant Biology. 57: 164-170. PMID 33142261 DOI: 10.1016/j.pbi.2020.08.007   
2020 Sun Y, Yu Q, Li L, Mei Z, Zhou B, Liu S, Pan T, Wu L, Lei Y, Liu L, Drmanac R, Ma K, Liu S. Single-cell RNA profiling links ncRNAs to spatiotemporal gene expression during C. elegans embryogenesis. Scientific Reports. 10: 18863. PMID 33139759 DOI: 10.1038/s41598-020-75801-3   
2020 Lu J, Huang XY, Wang YH, Xie JW, Wang JB, Lin JX, Chen QY, Cao LL, Li P, Huang CM, Zheng CH. POC1A acts as a promising prognostic biomarker associated with high tumor immune cell infiltration in gastric cancer. Aging. 12: 18982-19011. PMID 33052878 DOI: 10.18632/aging.103624