Valerie Reinke - Publications

Yale University, New Haven, CT 
Genetics, Human Development

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Xu J, Kudron MM, Victorsen A, Gao J, Ammouri HN, Navarro FCP, Gevirtzman L, Waterston RH, White KP, Reinke V, Gerstein M. To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq. Nucleic Acids Research. PMID 33347581 DOI: 10.1093/nar/gkaa1155  1
2017 Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, ... ... Reinke V, et al. The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. PMID 29284660 DOI: 10.1534/genetics.117.300657  1
2016 Weicksel SE, Mahadav A, Moyle M, Cipriani PG, Kudron M, Pincus Z, Bahmanyar S, Abriola L, Merkel J, Gutwein M, Fernandez AG, Piano F, Gunsalus KC, Reinke V. A novel small molecule that disrupts a key event during the oocyte-to-embryo transition in C. elegans. Development (Cambridge, England). PMID 27510972 DOI: 10.1242/dev.140046  0.92
2014 Kasper DM, Wang G, Gardner KE, Johnstone TG, Reinke V. The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance. Developmental Cell. 31: 145-58. PMID 25373775 DOI: 10.1016/j.devcel.2014.09.015  0.92
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... Reinke V, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/nature13668  0.92
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Reinke V, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/nature13424  0.92
2014 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, ... Reinke V, et al. Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. 512: 400-5. PMID 25164749 DOI: 10.1038/nature13497  0.92
2014 Byrne AB, Walradt T, Gardner KE, Hubbert A, Reinke V, Hammarlund M. Insulin/IGF1 signaling inhibits age-dependent axon regeneration. Neuron. 81: 561-73. PMID 24440228 DOI: 10.1016/j.neuron.2013.11.019  0.92
2013 Reinke V, Krause M, Okkema P. Transcriptional regulation of gene expression in C. elegans. Wormbook : the Online Review of C. Elegans Biology. 1-34. PMID 23801596 DOI: 10.1895/wormbook.1.45.2  0.92
2013 Fontrodona L, Porta-de-la-Riva M, Morán T, Niu W, Díaz M, Aristizábal-Corrales D, Villanueva A, Schwartz S, Reinke V, Cerón J. RSR-2, the Caenorhabditis elegans ortholog of human spliceosomal component SRm300/SRRM2, regulates development by influencing the transcriptional machinery. Plos Genetics. 9: e1003543. PMID 23754964 DOI: 10.1371/journal.pgen.1003543  0.92
2013 Kudron M, Niu W, Lu Z, Wang G, Gerstein M, Snyder M, Reinke V. Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs. Genome Biology. 14: R5. PMID 23347407 DOI: 10.1186/gb-2013-14-1-r5  0.92
2012 Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, Angermann K, Hasse S, Rupprecht M, Vinis E, Tinney M, Preston E, Zinke A, Enst S, Teichgraber T, Janette J, ... ... Reinke V, et al. A genome-scale resource for in vivo tag-based protein function exploration in C. elegans. Cell. 150: 855-66. PMID 22901814 DOI: 10.1016/j.cell.2012.08.001  0.92
2011 Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM. Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nature Genetics. 43: 1179-85. PMID 22019781 DOI: 10.1038/ng.948  0.92
2011 Engelmann I, Griffon A, Tichit L, Montañana-Sanchis F, Wang G, Reinke V, Waterston RH, Hillier LW, Ewbank JJ. A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans Plos One. 6. PMID 21602919 DOI: 10.1371/journal.pone.0019055  0.92
2011 Petrella LN, Wang W, Spike CA, Rechtsteiner A, Reinke V, Strome S. synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival. Development (Cambridge, England). 138: 1069-79. PMID 21343362 DOI: 10.1242/dev.059501  0.92
2011 Waters KA, Reinke V. Extrinsic and intrinsic control of germ cell proliferation in Caenorhabditis elegans Molecular Reproduction and Development. 78: 151-160. PMID 21337453 DOI: 10.1002/mrd.21289  0.92
2011 Schober CS, Aydiner F, Booth CJ, Seli E, Reinke V. The kinase VRK1 is required for normal meiotic progression in mammalian oogenesis. Mechanisms of Development. 128: 178-90. PMID 21277975 DOI: 10.1016/j.mod.2011.01.004  0.92
2011 Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, ... Reinke V, et al. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Research. 21: 276-85. PMID 21177971 DOI: 10.1101/gr.110189.110  0.92
2011 Spencer WC, Zeller G, Watson JD, Henz SR, Watkins KL, McWhirter RD, Petersen S, Sreedharan VT, Widmer C, Jo J, Reinke V, Petrella L, Strome S, Von Stetina SE, Katz M, et al. A spatial and temporal map of C. elegans gene expression. Genome Research. 21: 325-41. PMID 21177967 DOI: 10.1101/gr.114595.110  0.92
2011 Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, ... ... Reinke V, et al. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Research. 21: 245-54. PMID 21177963 DOI: 10.1101/gr.114587.110  0.92
2010 Lei H, Fukushige T, Niu W, Sarov M, Reinke V, Krause M. A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques. Plos One. 5: e15898. PMID 21209968 DOI: 10.1371/journal.pone.0015898  0.92
2010 Agarwal A, Koppstein D, Rozowsky J, Sboner A, Habegger L, Hillier LW, Sasidharan R, Reinke V, Waterston RH, Gerstein M. Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays Bmc Genomics. 11. PMID 20565764 DOI: 10.1186/1471-2164-11-383  0.92
2010 Li X, Panea C, Wiggins CH, Reinke V, Leslie C. Learning "graph-mer" motifs that predict gene expression trajectories in development. Plos Computational Biology. 6: e1000761. PMID 20454681 DOI: 10.1371/journal.pcbi.1000761  0.92
2010 Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, ... ... Reinke V, et al. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. Plos Genetics. 6: e1000848. PMID 20174564 DOI: 10.1371/journal.pgen.1000848  0.92
2009 Niwa R, Hada K, Moliyama K, Ohniwa RL, Tan YM, Olsson-Carter K, Chi W, Reinke V, Slack FJ. C. elegans sym-1 is a downstream target of the hunchback-like-1 developmental timing transcription factor. Cell Cycle (Georgetown, Tex.). 8: 4147-54. PMID 19923914  0.92
2009 Katz DJ, Edwards TM, Reinke V, Kelly WG. A C. elegans LSD1 demethylase contributes to germline immortality by reprogramming epigenetic memory. Cell. 137: 308-20. PMID 19379696 DOI: 10.1016/j.cell.2009.02.015  0.92
2009 Chi W, Reinke V. DPL-1 (DP) acts in the germ line to coordinate ovulation and fertilization in C. elegans Mechanisms of Development. 126: 406-416. PMID 19368797 DOI: 10.1016/j.mod.2009.01.008  0.92
2009 Reinke V, Cutter AD. Germline expression influences operon organization in the Caenorhabditis elegans genome. Genetics. 181: 1219-28. PMID 19204375 DOI: 10.1534/genetics.108.099283  0.92
2009 Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH. Massively parallel sequencing of the polyadenylated transcriptome of C. elegans Genome Research. 19: 657-666. PMID 19181841 DOI: 10.1101/gr.088112.108  0.92
2008 Kudron MM, Reinke V. C. elegans nucleostemin is required for larval growth and germline stem cell division. Plos Genetics. 4: e1000181. PMID 18725931 DOI: 10.1371/journal.pgen.1000181  1
2008 Boag PR, Atalay A, Robida S, Reinke V, Blackwell TK. Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis. The Journal of Cell Biology. 182: 543-57. PMID 18695045 DOI: 10.1083/jcb.200801183  0.92
2008 Wang G, Reinke V. A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis. Current Biology : Cb. 18: 861-7. PMID 18501605 DOI: 10.1016/j.cub.2008.05.009  0.92
2008 Spike CA, Bader J, Reinke V, Strome S. DEPS-1 promotes P-granule assembly and RNA interference in C. elegans germ cells. Development (Cambridge, England). 135: 983-93. PMID 18234720 DOI: 10.1242/dev.015552  0.92
2008 Leacock SW, Reinke V. MEG-1 and MEG-2 are embryo-specific P-granule components required for germline development in Caenorhabditis elegans. Genetics. 178: 295-306. PMID 18202375 DOI: 10.1534/genetics.107.080218  1
2007 Derry WB, Bierings R, van Iersel M, Satkunendran T, Reinke V, Rothman JH. Regulation of developmental rate and germ cell proliferation in Caenorhabditis elegans by the p53 gene network. Cell Death and Differentiation. 14: 662-70. PMID 17186023 DOI: 10.1038/sj.cdd.4402075  0.92
2006 Troemel ER, Chu SW, Reinke V, Lee SS, Ausubel FM, Kim DH. p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans. Plos Genetics. 2: e183. PMID 17096597 DOI: 10.1371/journal.pgen.0020183  0.92
2006 Leacock SW, Reinke V. Expression profiling of MAP kinase-mediated meiotic progression in Caenorhabditis elegans. Plos Genetics. 2: e174. PMID 17096596 DOI: 10.1371/journal.pgen.0020174  1
2006 Bender LB, Suh J, Carroll CR, Fong Y, Fingerman IM, Briggs SD, Cao R, Zhang Y, Reinke V, Strome S. MES-4: an autosome-associated histone methyltransferase that participates in silencing the X chromosomes in the C. elegans germ line. Development (Cambridge, England). 133: 3907-17. PMID 16968818 DOI: 10.1242/dev.02584  0.92
2006 Chi W, Reinke V. Promotion of oogenesis and embryogenesis in the C. elegans gonad by EFL-1/DPL-1 (E2F) does not require LIN-35 (pRB) Development. 133: 3147-3157. PMID 16854972 DOI: 10.1242/dev.02490  0.92
2005 Thoemke K, Yi W, Ross JM, Kim S, Reinke V, Zarkower D. Genome-wide analysis of sex-enriched gene expression during C. elegans larval development. Developmental Biology. 284: 500-8. PMID 15987632 DOI: 10.1016/j.ydbio.2005.05.017  0.92
2005 Whetstine JR, Ceron J, Ladd B, Dufourcq P, Reinke V, Shi Y. Regulation of tissue-specific and extracellular matrix-related genes by a class I histone deacetylase. Molecular Cell. 18: 483-90. PMID 15893731 DOI: 10.1016/j.molcel.2005.04.006  0.92
2004 Reinke V, Gil IS, Ward S, Kazmer K. Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans. Development (Cambridge, England). 131: 311-23. PMID 14668411 DOI: 10.1242/dev.00914  0.92
2003 Pellettieri J, Reinke V, Kim SK, Seydoux G. Coordinate activation of maternal protein degradation during the egg-to-embryo transition in C. elegans. Developmental Cell. 5: 451-62. PMID 12967564 DOI: 10.1016/S1534-5807(03)00231-4  0.92
2002 Reinke V, White KP. Developmental genomic approaches in model organisms. Annual Review of Genomics and Human Genetics. 3: 153-78. PMID 12142361 DOI: 10.1146/annurev.genom.3.031302.100922  0.92
2002 Kelly WG, Schaner CE, Dernburg AF, Lee MH, Kim SK, Villeneuve AM, Reinke V. X-chromosome silencing in the germline of C. elegans. Development (Cambridge, England). 129: 479-92. PMID 11807039  0.92
2001 Parant JM, Reinke V, Mims B, Lozano G. Organization, expression, and localization of the murine mdmx gene and pseudogene. Gene. 270: 277-83. PMID 11404026 DOI: 10.1016/S0378-1119(01)00432-2  0.92
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