| Year |
Citation |
Score |
| 2024 |
Dupic T, Phillips AM, Desai MM. Protein sequence landscapes are not so simple: on reference-free versus reference-based inference. Biorxiv : the Preprint Server For Biology. PMID 38352387 DOI: 10.1101/2024.01.29.577800 |
0.477 |
|
| 2023 |
Moulana A, Dupic T, Phillips AM, Desai MM. Genotype-phenotype landscapes for immune-pathogen coevolution. Trends in Immunology. PMID 37024340 DOI: 10.1016/j.it.2023.03.006 |
0.571 |
|
| 2023 |
Moulana A, Dupic T, Phillips AM, Chang J, Roffler AA, Greaney AJ, Starr TN, Bloom JD, Desai MM. The landscape of antibody binding affinity in SARS-CoV-2 Omicron BA.1 evolution. Elife. 12. PMID 36803543 DOI: 10.7554/eLife.83442 |
0.561 |
|
| 2023 |
Phillips AM, Maurer DP, Brooks C, Dupic T, Schmidt AG, Desai MM. Hierarchical sequence-affinity landscapes shape the evolution of breadth in an anti-influenza receptor binding site antibody. Elife. 12. PMID 36625542 DOI: 10.7554/eLife.83628 |
0.564 |
|
| 2022 |
Moulana A, Dupic T, Phillips AM, Chang J, Nieves S, Roffler AA, Greaney AJ, Starr TN, Bloom JD, Desai MM. Compensatory epistasis maintains ACE2 affinity in SARS-CoV-2 Omicron BA.1. Nature Communications. 13: 7011. PMID 36384919 DOI: 10.1038/s41467-022-34506-z |
0.583 |
|
| 2022 |
Yoon J, Nekongo EE, Patrick JE, Hui T, Phillips AM, Ponomarenko AI, Hendel SJ, Sebastian RM, Zhang YM, Butty VL, Ogbunugafor CB, Lin YS, Shoulders MD. The endoplasmic reticulum proteostasis network profoundly shapes the protein sequence space accessible to HIV envelope. Plos Biology. 20: e3001569. PMID 35180219 DOI: 10.1371/journal.pbio.3001569 |
0.55 |
|
| 2021 |
Tung S, Bakerlee CW, Phillips AM, Nguyen Ba AN, Desai MM. The genetic basis of differential autodiploidization in evolving yeast populations. G3 (Bethesda, Md.). 11. PMID 34849811 DOI: 10.1093/g3journal/jkab192 |
0.483 |
|
| 2021 |
Bakerlee CW, Phillips AM, Nguyen Ba AN, Desai MM. Dynamics and variability in the pleiotropic effects of adaptation in laboratory budding yeast populations. Elife. 10. PMID 34596043 DOI: 10.7554/eLife.70918 |
0.536 |
|
| 2021 |
Phillips AM, Lawrence KR, Moulana A, Dupic T, Chang J, Johnson MS, Cvijovic I, Mora T, Walczak AM, Desai MM. Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies. Elife. 10. PMID 34491198 DOI: 10.7554/eLife.71393 |
0.559 |
|
| 2021 |
Johnson MS, Gopalakrishnan S, Goyal J, Dillingham ME, Bakerlee CW, Humphrey PT, Jagdish T, Jerison ER, Kosheleva K, Lawrence KR, Min J, Moulana A, Phillips AM, Piper JC, Purkanti R, et al. Phenotypic and molecular evolution across 10,000 generations in laboratory budding yeast populations. Elife. 10. PMID 33464204 DOI: 10.7554/eLife.63910 |
0.542 |
|
| 2018 |
Phillips AM, Ponomarenko AI, Chen K, Ashenberg O, Miao J, McHugh SM, Butty VL, Whittaker CA, Moore CL, Bloom JD, Lin YS, Shoulders MD. Destabilized adaptive influenza variants critical for innate immune system escape are potentiated by host chaperones. Plos Biology. 16: e3000008. PMID 30222731 DOI: 10.1371/Journal.Pbio.3000008 |
0.749 |
|
| 2018 |
Phillips AM, Doud MB, Gonzalez LO, Butty VL, Lin YS, Bloom JD, Shoulders MD. Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin. Elife. 7. PMID 30188321 DOI: 10.7554/Elife.38795 |
0.764 |
|
| 2018 |
Phillips AM, Doud MB, Gonzalez LO, Butty VL, Lin Y, Bloom JD, Shoulders MD. Author response: Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin Elife. DOI: 10.7554/Elife.38795.037 |
0.71 |
|
| 2017 |
Phillips AM, Gonzalez LO, Nekongo EE, Ponomarenko AI, McHugh SM, Butty VL, Levine SS, Lin YS, Mirny LA, Shoulders MD. Host proteostasis modulates influenza evolution. Elife. 6. PMID 28949290 DOI: 10.7554/Elife.28652 |
0.745 |
|
| 2017 |
Phillips AM, Gonzalez LO, Nekongo EE, Ponomarenko AI, McHugh SM, Butty VL, Levine SS, Lin Y, Mirny LA, Shoulders MD. Author response: Host proteostasis modulates influenza evolution Elife. DOI: 10.7554/Elife.28652.022 |
0.755 |
|
| 2015 |
Phillips AM, Shoulders MD. The Path of Least Resistance: Mechanisms to Reduce Influenza's Sensitivity to Oseltamivir. Journal of Molecular Biology. PMID 26748011 DOI: 10.1016/J.Jmb.2015.12.019 |
0.687 |
|
| 2015 |
Phillips A, Nekongo E, Shoulders M. Hijacking the Host Cell's Protein Homeostasis Network to Potentiate Influenza Evolution The Faseb Journal. 29. DOI: 10.1096/Fasebj.29.1_Supplement.713.4 |
0.789 |
|
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