Peter H. Sudmant, Ph.D. - Related publications

Affiliations: 
Genome Sciences University of Washington, Seattle, Seattle, WA 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Trost B, Loureiro LO, Scherer SW. Discovery of genomic variation across a generation. Human Molecular Genetics. PMID 34296264 DOI: 10.1093/hmg/ddab209   
2021 Conde C, Price-Carter M, Cochard T, Branger M, Stevenson K, Whittington R, Bannantine JP, Biet F. Whole-Genome Analysis of subsp. IS -. Frontiers in Microbiology. 12: 660002. PMID 34040595 DOI: 10.3389/fmicb.2021.660002   
2021 Li Q, Tian S, Yan B, Liu CM, Lam TW, Li R, Luo R. Building a Chinese pan-genome of 486 individuals. Communications Biology. 4: 1016. PMID 34462542 DOI: 10.1038/s42003-021-02556-6   
2021 Morga B, Jacquot M, Pelletier C, Chevignon G, Dégremont L, Biétry A, Pepin JF, Heurtebise S, Escoubas JM, Bean TP, Rosani U, Bai CM, Renault T, Lamy JB. Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species. Frontiers in Microbiology. 12: 711377. PMID 34326830 DOI: 10.3389/fmicb.2021.711377   
2021 Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C. Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen . Microorganisms. 9. PMID 34361922 DOI: 10.3390/microorganisms9071488   
2021 Vervoort L, Dierckxsens N, Pereboom Z, Capozzi O, Rocchi M, Shaikh TH, Vermeesch JR. 22q11.2 Low Copy Repeats Expanded in the Human Lineage. Frontiers in Genetics. 12: 706641. PMID 34335701 DOI: 10.3389/fgene.2021.706641   
2021 Noureen M, Kawashima T, Arita M. Genetic Markers of Genome Rearrangements in . Microorganisms. 9. PMID 33802974 DOI: 10.3390/microorganisms9030621   
2021 Foley JF, Elgart B, Alex Merrick B, Phadke DP, Cook ME, Malphurs JA, Solomon GG, Shah RR, Fessler MB, Miller FW, Gerrish KE. Whole genome sequencing of low input circulating cell-free DNA obtained from normal human subjects. Physiological Reports. 9: e14993. PMID 34350716 DOI: 10.14814/phy2.14993   
2021 Anene-Nzelu CG, Lee MCJ, Tan WLW, Dashi A, Foo RSY. Genomic enhancers in cardiac development and disease. Nature Reviews. Cardiology. PMID 34381190 DOI: 10.1038/s41569-021-00597-2   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Sharon BM, Hulyalkar NV, Nguyen VH, Zimmern PE, Palmer KL, De Nisco NJ. Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies. Journal of Visualized Experiments : Jove. PMID 34487123 DOI: 10.3791/62872   
2021 Kim SH, Lee SJ, Jo E, Kim J, Kim JU, Kim JH, Park H, Chi YM. Genome of the Southern Giant Petrel Assembled Using Third-Generation DNA Sequencing and Linked Reads Reveals Evolutionary Traits of Southern Avian. Animals : An Open Access Journal From Mdpi. 11. PMID 34359174 DOI: 10.3390/ani11072046   
2021 Woodhouse MR, Cannon EK, Portwood JL, Harper LC, Gardiner JM, Schaeffer ML, Andorf CM. A pan-genomic approach to genome databases using maize as a model system. Bmc Plant Biology. 21: 385. PMID 34416864 DOI: 10.1186/s12870-021-03173-5   
2021 Smith SR, Normandeau E, Djambazian H, Nawarathna PM, Berube P, Muir AM, Ragoussis J, Penney CM, Scribner KT, Luikart G, Wilson CC, Bernatchez L. A chromosome-anchored genome assembly for Lake Trout (Salvelinus namaycush). Molecular Ecology Resources. PMID 34351050 DOI: 10.1111/1755-0998.13483   
2021 Dabral A, Shamoon A, Meena RK, Kant R, Pandey S, Ginwal HS, Bhandari MS. Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization in . Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 1-16. PMID 34305342 DOI: 10.1007/s12298-021-01035-w   
2021 Dabral A, Shamoon A, Meena RK, Kant R, Pandey S, Ginwal HS, Bhandari MS. Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization in . Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 1-16. PMID 34305342 DOI: 10.1007/s12298-021-01035-w   
2021 Georgakopoulos-Soares I, Yizhar-Barnea O, Mouratidis I, Hemberg M, Ahituv N. Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution. Genome Biology. 22: 245. PMID 34433494 DOI: 10.1186/s13059-021-02459-z   
2021 Yousaf A, Liu J, Ye S, Chen H. Current Progress in Evolutionary Comparative Genomics of Great Apes. Frontiers in Genetics. 12: 657468. PMID 34456962 DOI: 10.3389/fgene.2021.657468   
2021 Moghaddar N, Brown DJ, Swan AA, Gurman PM, Li L, van der Werf JH. Genomic prediction in a numerically small breed population using prioritized genetic markers from whole-genome sequence data. Journal of Animal Breeding and Genetics = Zeitschrift Fur Tierzuchtung Und Zuchtungsbiologie. PMID 34374454 DOI: 10.1111/jbg.12638   
2021 Ma L, Dong C, Song C, Wang X, Zheng X, Niu Y, Chen S, Feng W. genome assembly of the potent medicinal plant using nanopore technology. Computational and Structural Biotechnology Journal. 19: 3954-3963. PMID 34377362 DOI: 10.1016/j.csbj.2021.07.006   
2021 Chen Z, Shen M, Mao C, Wang C, Yuan P, Wang T, Sun D. A Type I Restriction Modification System Influences Genomic Evolution Driven by Horizontal Gene Transfer in . Frontiers in Microbiology. 12: 709571. PMID 34413842 DOI: 10.3389/fmicb.2021.709571   
2021 Zhang JY, Roberts H, Flores DSC, Cutler AJ, Brown AC, Whalley JP, Mielczarek O, Buck D, Lockstone H, Xella B, Oliver K, Corton C, Betteridge E, Bashford-Rogers R, Knight JC, et al. Using de novo assembly to identify structural variation of eight complex immune system gene regions. Plos Computational Biology. 17: e1009254. PMID 34343164 DOI: 10.1371/journal.pcbi.1009254   
2021 Jobanputra V, Wrzeszczynski KO, Buttner R, Caldas C, Cuppen E, Grimmond S, Haferlach T, Mullighan C, Schuh A, Elemento O. Clinical interpretation of whole-genome and whole-transcriptome sequencing for precision oncology. Seminars in Cancer Biology. PMID 34256129 DOI: 10.1016/j.semcancer.2021.07.003   
2021 Yan SM, Sherman RM, Taylor DJ, Nair DR, Bortvin AN, Schatz MC, McCoy RC. Local adaptation and archaic introgression shape global diversity at human structural variant loci. Elife. 10. PMID 34528508 DOI: 10.7554/eLife.67615   
2021 Zhang X, Liu T, Wang J, Wang P, Qiu Y, Zhao W, Pang S, Li X, Wang H, Song J, Zhang W, Yang W, Sun Y, Li X. Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild and weedy radishes. Molecular Plant. PMID 34384905 DOI: 10.1016/j.molp.2021.08.005   
2021 Yuan XL, Zha DX, Xue L, Wang XY, Xu G, Li WB, Xu HQ. Complete chloroplast genome sequence of and its phylogenetic position. Mitochondrial Dna. Part B, Resources. 6: 2480-2481. PMID 34377800 DOI: 10.1080/23802359.2021.1915199   
2021 Schaefer NK, Shapiro B, Green RE. An ancestral recombination graph of human, Neanderthal, and Denisovan genomes. Science Advances. 7. PMID 34272242 DOI: 10.1126/sciadv.abc0776   
2021 Schaefer NK, Shapiro B, Green RE. An ancestral recombination graph of human, Neanderthal, and Denisovan genomes. Science Advances. 7. PMID 34272242 DOI: 10.1126/sciadv.abc0776   
2021 Wold J, Koepfli KP, Galla SJ, Eccles D, Hogg CJ, Le Lec MF, Guhlin J, Santure AW, Steeves TE. Expanding the conservation genomics toolbox: incorporating structural variants to enhance genomic studies for species of conservation concern. Molecular Ecology. PMID 34424587 DOI: 10.1111/mec.16141   
2021 Alzahrani D, Albokhari E, Yaradua S, Abba A. Complete chloroplast genome sequences of and and other Cleomaceae Species, comparative analysis and phylogenetic relationships. Saudi Journal of Biological Sciences. 28: 2476-2490. PMID 33911961 DOI: 10.1016/j.sjbs.2021.01.049   
2021 Vega-Estévez S, Armitage A, Bates HJ, Harrison RJ, Buscaino A. The Genome of the CTG(Ser1) Yeast Is Plastic. Mbio. e0187121. PMID 34488452 DOI: 10.1128/mBio.01871-21   
2021 Hernández-Juárez LE, Camorlinga M, Méndez-Tenorio A, Calderón JF, Huang BC, Bandoy DDR, Weimer BC, Torres J. Analyses of publicly available genomes revealed genetic distances indicating they belong to more than one species. Virulence. 12: 1950-1964. PMID 34304696 DOI: 10.1080/21505594.2021.1950955   
2021 Tarekegn GM, Khayatzadeh N, Liu B, Osama S, Haile A, Rischkowsky B, Zhang W, Tesfaye K, Dessie T, Mwai OA, Djikeng A, Mwacharo JM. Ethiopian indigenous goats offer insights into past and recent demographic dynamics and local adaptation in sub-Saharan African goats. Evolutionary Applications. 14: 1716-1731. PMID 34295359 DOI: 10.1111/eva.13118   
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 Patino LH, Castillo-Castañeda A, Muñoz M, Muskus C, Rivero-Rodríguez M, Pérez-Doria A, Bejarano EE, Ramírez JD. Revisiting the heterogeneous global genomic population structure of . Microbial Genomics. 7. PMID 34491157 DOI: 10.1099/mgen.0.000640   
2021 Quan W, Liu B, Wang Y. Fast and SNP-aware short read alignment with SALT. Bmc Bioinformatics. 22: 172. PMID 34433415 DOI: 10.1186/s12859-021-04088-6   
2021 Maroilley T, Li X, Oldach M, Jean F, Stasiuk SJ, Tarailo-Graovac M. Deciphering complex genome rearrangements in C. elegans using short-read whole genome sequencing. Scientific Reports. 11: 18258. PMID 34521941 DOI: 10.1038/s41598-021-97764-9   
2021 Galvez LC, Koh RBL, Barbosa CFC, Asunto JC, Catalla JL, Atienza RG, Costales KT, Aquino VM, Zhang D. Sequencing and de Novo Assembly of Abaca ( Née) var. Abuab Genome. Genes. 12. PMID 34440376 DOI: 10.3390/genes12081202   
2021 Li S, Zhao G, Han H, Li Y, Li J, Wang J, Cao G, Li X. Genome collinearity analysis illuminates the evolution of donkey chromosome 1 and horse chromosome 5 in perissodactyls: A comparative study. Bmc Genomics. 22: 665. PMID 34521340 DOI: 10.1186/s12864-021-07984-6   
2021 Oggenfuss U, Badet T, Wicker T, Hartmann FE, Singh NK, Abraham L, Karisto P, Vonlanthen T, Mundt C, McDonald BA, Croll D. A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen. Elife. 10. PMID 34528512 DOI: 10.7554/eLife.69249   
2021 Luzuriaga-Aveiga VE, Ugarte M, Weir JT. Distinguishing genomic homogenization from parapatric speciation in an elevationally replacing pair of Ramphocelus tanagers. Molecular Ecology. PMID 34403554 DOI: 10.1111/mec.16128   
2021 Lee JH, Siddique MI, Kwon JK, Kang BC. Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of . Frontiers in Microbiology. 12: 694136. PMID 34484141 DOI: 10.3389/fmicb.2021.694136   
2021 Lou RN, Jacobs A, Wilder A, Therkildsen NO. A beginner's guide to low-coverage whole genome sequencing for population genomics. Molecular Ecology. PMID 34250668 DOI: 10.1111/mec.16077   
2021 Lou RN, Jacobs A, Wilder A, Therkildsen NO. A beginner's guide to low-coverage whole genome sequencing for population genomics. Molecular Ecology. PMID 34250668 DOI: 10.1111/mec.16077   
2021 Becher H, Powell RF, Brown MR, Metherell C, Pellicer J, Leitch IJ, Twyford AD. The nature of intraspecific and interspecific genome size variation in taxonomically complex eyebrights. Annals of Botany. PMID 34318876 DOI: 10.1093/aob/mcab102   
2021 Zeng Q, Liu J, Wang C, Wang H, Zhang L, Hu J, Bao L, Wang S. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal. 19: 4954-4960. PMID 34527199 DOI: 10.1016/j.csbj.2021.08.038   
2021 Miga KH, Sullivan BA. Expanding studies of chromosome structure and function in the era of T2T genomics. Human Molecular Genetics. PMID 34302168 DOI: 10.1093/hmg/ddab214   
2021 Miga KH, Sullivan BA. Expanding studies of chromosome structure and function in the era of T2T genomics. Human Molecular Genetics. PMID 34302168 DOI: 10.1093/hmg/ddab214   
2021 Ahmed I, Jeon G. Enabling Artificial Intelligence for Genome Sequence Analysis of COVID-19 and Alike Viruses. Interdisciplinary Sciences, Computational Life Sciences. PMID 34357528 DOI: 10.1007/s12539-021-00465-0   
2021 Al-Qurainy F, Gaafar AZ, Khan S, Nadeem M, Alshameri AM, Tarroum M, Alansi S, Almarri NB, Alfarraj NS. Estimation of Genome Size in the Endemic Species and the Locally Rare Species Using comparative Analyses of Flow Cytometry and K-Mer Approaches. Plants (Basel, Switzerland). 10. PMID 34371565 DOI: 10.3390/plants10071362