Osnat Penn, Ph.D. - Publications

Affiliations: 
Genome Sciences University of Washington, Seattle, Seattle, WA 

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE. Transcriptional fates of human-specific segmental duplications in brain. Genome Research. PMID 30228200 DOI: 10.1101/gr.237610.118  0.52
2017 Dennis MY, Harshman L, Nelson BJ, Penn O, Cantsilieris S, Huddleston J, Antonacci F, Penewit K, Denman L, Raja A, Baker C, Mark K, Malig M, Janke N, Espinoza C, et al. The evolution and population diversity of human-specific segmental duplications. Nature Ecology & Evolution. 1: 69. PMID 28812736 DOI: 10.1038/s41559-016-0069  0.56
2017 Dennis MY, Harshman L, Nelson BJ, Penn O, Cantsilieris S, Huddleston J, Antonacci F, Penewit K, Denman L, Raja A, Baker C, Mark K, Malig M, Janke N, Espinoza C, et al. The evolution and population diversity of human-specific segmental duplications. Nature Ecology & Evolution. 1. PMID 28580430 DOI: 10.1038/s41559-016-0069  0.56
2017 Dougherty ML, Nuttle X, Penn O, Nelson BJ, Huddleston J, Baker C, Harshman L, Duyzend MH, Ventura M, Antonacci F, Sandstrom R, Dennis MY, Eichler EE. The birth of a human-specific neural gene by incomplete duplication and gene fusion. Genome Biology. 18: 49. PMID 28279197 DOI: 10.1186/s13059-017-1163-9  0.56
2016 Nuttle X, Giannuzzi G, Duyzend MH, Schraiber JG, Narvaiza I, Sudmant PH, Penn O, Chiatante G, Malig M, Huddleston J, Benner C, Camponeschi F, Ciofi-Baffoni S, Stessman HA, Marchetto MC, et al. Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility. Nature. PMID 27487209 DOI: 10.1038/nature19075  0.52
2016 Stessman HA, Willemsen MH, Fenckova M, Penn O, Hoischen A, Xiong B, Wang T, Hoekzema K, Vives L, Vogel I, Brunner HG, van der Burgt I, Ockeloen CW, Schuurs-Hoeijmakers JH, Klein Wassink-Ruiter JS, et al. Disruption of POGZ Is Associated with Intellectual Disability and Autism Spectrum Disorders. American Journal of Human Genetics. 98: 541-552. PMID 26942287 DOI: 10.1016/j.ajhg.2016.02.004  0.52
2015 Bar-Rogovsky H, Stern A, Penn O, Kobl I, Pupko T, Tawfik DS. Assessing the prediction fidelity of ancestral reconstruction by a library approach. Protein Engineering, Design & Selection : Peds. 28: 507-18. PMID 26275856 DOI: 10.1093/protein/gzv038  0.52
2015 Hormozdiari F, Penn O, Borenstein E, Eichler EE. The discovery of integrated gene networks for autism and related disorders. Genome Research. 25: 142-54. PMID 25378250 DOI: 10.1101/gr.178855.114  0.52
2014 Bernier R, Golzio C, Xiong B, Stessman HA, Coe BP, Penn O, Witherspoon K, Gerdts J, Baker C, Vulto-van Silfhout AT, Schuurs-Hoeijmakers JH, Fichera M, Bosco P, Buono S, Alberti A, et al. Disruptive CHD8 mutations define a subtype of autism early in development. Cell. 158: 263-76. PMID 24998929 DOI: 10.1016/j.cell.2014.06.017  0.52
2012 Ryvkin A, Ashkenazy H, Smelyanski L, Kaplan G, Penn O, Weiss-Ottolenghi Y, Privman E, Ngam PB, Woodward JE, May GD, Bell C, Pupko T, Gershoni JM. Deep Panning: steps towards probing the IgOme. Plos One. 7: e41469. PMID 22870226 DOI: 10.1371/journal.pone.0041469  0.52
2012 Ashkenazy H, Penn O, Doron-Faigenboim A, Cohen O, Cannarozzi G, Zomer O, Pupko T. FastML: a web server for probabilistic reconstruction of ancestral sequences. Nucleic Acids Research. 40: W580-4. PMID 22661579 DOI: 10.1093/nar/gks498  0.52
2012 Turner D, Amit S, Chalom S, Penn O, Pupko T, Katchman E, Matus N, Tellio H, Katzir M, Avidor B. Emergence of an HIV-1 cluster harbouring the major protease L90M mutation among treatment-naïve patients in Tel Aviv, Israel. Hiv Medicine. 13: 202-6. PMID 22093289 DOI: 10.1111/j.1468-1293.2011.00960.x  0.52
2012 Gelfman S, Burstein D, Penn O, Savchenko A, Amit M, Schwartz S, Pupko T, Ast G. Changes in exon-intron structure during vertebrate evolution affect the splicing pattern of exons. Genome Research. 22: 35-50. PMID 21974994 DOI: 10.1101/gr.119834.110  0.52
2012 Privman E, Penn O, Pupko T. Improving the performance of positive selection inference by filtering unreliable alignment regions. Molecular Biology and Evolution. 29: 1-5. PMID 21772063 DOI: 10.1093/molbev/msr177  0.52
2010 Stern A, Mayrose I, Penn O, Shaul S, Gophna U, Pupko T. An evolutionary analysis of lateral gene transfer in thymidylate synthase enzymes. Systematic Biology. 59: 212-25. PMID 20525631 DOI: 10.1093/sysbio/syp104  0.52
2010 Penn O, Privman E, Ashkenazy H, Landan G, Graur D, Pupko T. GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Research. 38: W23-8. PMID 20497997 DOI: 10.1093/nar/gkq443  0.52
2010 Penn O, Privman E, Landan G, Graur D, Pupko T. An alignment confidence score capturing robustness to guide tree uncertainty. Molecular Biology and Evolution. 27: 1759-67. PMID 20207713 DOI: 10.1093/molbev/msq066  0.52
2009 Blanga-Kanfi S, Miranda H, Penn O, Pupko T, DeBry RW, Huchon D. Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. Bmc Evolutionary Biology. 9: 71. PMID 19341461 DOI: 10.1186/1471-2148-9-71  0.52
2008 Penn O, Stern A, Rubinstein ND, Dutheil J, Bacharach E, Galtier N, Pupko T. Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes. Plos Computational Biology. 4: e1000214. PMID 18989394 DOI: 10.1371/journal.pcbi.1000214  0.52
2007 Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund NT, Bublil EM, Ruppin E, Sharan R, Gershoni JM, Martz E, Pupko T. Pepitope: epitope mapping from affinity-selected peptides. Bioinformatics (Oxford, England). 23: 3244-6. PMID 17977889 DOI: 10.1093/bioinformatics/btm493  0.52
2007 Bublil EM, Freund NT, Mayrose I, Penn O, Roitburd-Berman A, Rubinstein ND, Pupko T, Gershoni JM. Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm. Proteins. 68: 294-304. PMID 17427229 DOI: 10.1002/prot.21387  0.52
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