| Year |
Citation |
Score |
| 2022 |
Denti L, Khorsand P, Bonizzoni P, Hormozdiari F, Chikhi R. SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads. Nature Methods. PMID 36550274 DOI: 10.1038/s41592-022-01674-1 |
0.493 |
|
| 2021 |
Khorsand P, Denti L, Bonizzoni P, Chikhi R, Hormozdiari F. Comparative genome analysis using sample-specific string detection in accurate long reads. Bioinformatics Advances. 1: vbab005. PMID 36700094 DOI: 10.1093/bioadv/vbab005 |
0.475 |
|
| 2021 |
Khorsand P, Hormozdiari F. Nebula: ultra-efficient mapping-free structural variant genotyper. Nucleic Acids Research. PMID 33503255 DOI: 10.1093/nar/gkab025 |
0.356 |
|
| 2019 |
Chow J, Jensen M, Amini H, Hormozdiari F, Penn O, Shifman S, Girirajan S, Hormozdiari F. Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders. Genome Medicine. 11: 65. PMID 31653223 DOI: 10.1186/S13073-019-0678-Y |
0.715 |
|
| 2019 |
Ricketts C, Seidman D, Popic V, Hormozdiari F, Batzoglou S, Hajirasouliha I. Meltos: Multi-Sample Tumor Phylogeny Reconstruction for Structural Variants. Bioinformatics (Oxford, England). PMID 31584621 DOI: 10.1093/Bioinformatics/Btz737 |
0.417 |
|
| 2019 |
Hormozdiari F, van de Geijn B, Nasser J, Weissbrod O, Gazal S, Ju CJ, Connor LO, Hujoel MLA, Engreitz J, Hormozdiari F, Price AL. Functional disease architectures reveal unique biological role of transposable elements. Nature Communications. 10: 4054. PMID 31492842 DOI: 10.1038/S41467-019-11957-5 |
0.431 |
|
| 2019 |
Standage DS, Brown CT, Hormozdiari F. Kevlar: A Mapping-Free Framework for Accurate Discovery of De Novo Variants. Iscience. 18: 28-36. PMID 31377530 DOI: 10.1016/J.Isci.2019.07.032 |
0.501 |
|
| 2019 |
Chaisson MJP, Sanders AD, Zhao X, Malhotra A, Porubsky D, Rausch T, Gardner EJ, Rodriguez OL, Guo L, Collins RL, Fan X, Wen J, Handsaker RE, Fairley S, Kronenberg ZN, ... ... Hormozdiari F, et al. Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nature Communications. 10: 1784. PMID 30992455 DOI: 10.1038/S41467-018-08148-Z |
0.82 |
|
| 2019 |
Soylev A, Le T, Amini H, Alkan C, Hormozdiari F. Discovery of tandem and interspersed segmental duplications using high throughput sequencing. Bioinformatics (Oxford, England). PMID 30937433 DOI: 10.1093/Bioinformatics/Btz237 |
0.699 |
|
| 2019 |
Huynh L, Hormozdiari F. TAD fusion score: discovery and ranking the contribution of deletions to genome structure. Genome Biology. 20: 60. PMID 30898144 DOI: 10.1186/S13059-019-1666-7 |
0.435 |
|
| 2019 |
Coe BP, Stessman HAF, Sulovari A, Geisheker MR, Bakken TE, Lake AM, Dougherty JD, Lein ES, Hormozdiari F, Bernier RA, Eichler EE. Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity. Nature Genetics. 51: 106-116. PMID 30559488 DOI: 10.1038/S41588-018-0288-4 |
0.67 |
|
| 2018 |
Huynh L, Hormozdiari F. Combinatorial Approach for Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders. Genetics. PMID 30297454 DOI: 10.1534/Genetics.118.301280 |
0.342 |
|
| 2018 |
Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, et al. High-resolution comparative analysis of great ape genomes. Science (New York, N.Y.). 360. PMID 29880660 DOI: 10.1126/Science.Aar6343 |
0.801 |
|
| 2018 |
Main BJ, Everitt A, Cornel AJ, Hormozdiari F, Lanzaro GC. Genetic variation associated with increased insecticide resistance in the malaria mosquito, Anopheles coluzzii. Parasites & Vectors. 11: 225. PMID 29618373 DOI: 10.1186/S13071-018-2817-5 |
0.314 |
|
| 2017 |
Turner TN, Coe BP, Dickel DE, Hoekzema K, Nelson BJ, Zody MC, Kronenberg ZN, Hormozdiari F, Raja A, Pennacchio LA, Darnell RB, Eichler EE. Genomic Patterns of De Novo Mutation in Simplex Autism. Cell. PMID 28965761 DOI: 10.1016/J.Cell.2017.08.047 |
0.72 |
|
| 2017 |
Soylev A, Kockan C, Hormozdiari F, Alkan C. Toolkit for automated and rapid discovery of structural variants. Methods (San Diego, Calif.). PMID 28583483 DOI: 10.1016/J.Ymeth.2017.05.030 |
0.706 |
|
| 2017 |
Stessman HA, Xiong B, Coe BP, Wang T, Hoekzema K, Fenckova M, Kvarnung M, Gerdts J, Trinh S, Cosemans N, Vives L, Lin J, Turner TN, Santen G, Ruivenkamp C, ... ... Hormozdiari F, et al. Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases. Nature Genetics. PMID 28191889 DOI: 10.1038/Ng.3792 |
0.671 |
|
| 2016 |
Hehir-Kwa JY, Marschall T, Kloosterman WP, Francioli LC, Baaijens JA, Dijkstra LJ, Abdellaoui A, Koval V, Thung DT, Wardenaar R, Renkens I, Coe BP, Deelen P, de Ligt J, Lameijer EW, ... ... Hormozdiari F, et al. A high-quality human reference panel reveals the complexity and distribution of genomic structural variants. Nature Communications. 7: 12989. PMID 27708267 DOI: 10.1038/Ncomms12989 |
0.783 |
|
| 2015 |
Turner TN, Hormozdiari F, Duyzend MH, McClymont SA, Hook PW, Iossifov I, Raja A, Baker C, Hoekzema K, Stessman HA, Zody MC, Nelson BJ, Huddleston J, Sandstrom R, Smith JD, et al. Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA. American Journal of Human Genetics. PMID 26749308 DOI: 10.1016/J.Ajhg.2015.11.023 |
0.822 |
|
| 2015 |
Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Hsi-Yang Fritz M, Konkel MK, Malhotra A, Stütz AM, Shi X, Paolo Casale F, ... Hormozdiari F, et al. An integrated map of structural variation in 2,504 human genomes. Nature. 526: 75-81. PMID 26432246 DOI: 10.1038/Nature15394 |
0.815 |
|
| 2015 |
Sudmant PH, Mallick S, Nelson BJ, Hormozdiari F, Krumm N, Huddleston J, Coe BP, Baker C, Nordenfelt S, Bamshad M, Jorde LB, Posukh OL, Sahakyan H, Watkins WS, Yepiskoposyan L, et al. Global diversity, population stratification, and selection of human copy number variation. Science (New York, N.Y.). PMID 26249230 DOI: 10.1126/Science.Aab3761 |
0.791 |
|
| 2015 |
Hormozdiari F, Kichaev G, Yang WY, Pasaniuc B, Eskin E. Identification of causal genes for complex traits. Bioinformatics (Oxford, England). 31: i206-i213. PMID 26072484 DOI: 10.1093/Bioinformatics/Btv240 |
0.385 |
|
| 2015 |
Kloosterman WP, Francioli LC, Hormozdiari F, Marschall T, Hehir-Kwa JY, Abdellaoui A, Lameijer EW, Moed MH, Koval V, Renkens I, van Roosmalen MJ, Arp P, Karssen LC, Coe BP, Handsaker RE, et al. Characteristics of de novo structural changes in the human genome. Genome Research. 25: 792-801. PMID 25883321 DOI: 10.1101/Gr.185041.114 |
0.743 |
|
| 2015 |
Hormozdiari F, Eskin E. Memory efficient assembly of human genome. Journal of Bioinformatics and Computational Biology. 13: 1550008. PMID 25603998 DOI: 10.1142/S0219720015500080 |
0.376 |
|
| 2015 |
Lee D, Hormozdiari F, Xin H, Hach F, Mutlu O, Alkan C. Fast and accurate mapping of Complete Genomics reads. Methods (San Diego, Calif.). 79: 3-10. PMID 25461772 DOI: 10.1016/J.Ymeth.2014.10.012 |
0.626 |
|
| 2015 |
Chaisson MJ, Huddleston J, Dennis MY, Sudmant PH, Malig M, Hormozdiari F, Antonacci F, Surti U, Sandstrom R, Boitano M, Landolin JM, Stamatoyannopoulos JA, Hunkapiller MW, Korlach J, Eichler EE. Resolving the complexity of the human genome using single-molecule sequencing. Nature. 517: 608-11. PMID 25383537 DOI: 10.1038/Nature13907 |
0.819 |
|
| 2015 |
Hormozdiari F, Penn O, Borenstein E, Eichler EE. The discovery of integrated gene networks for autism and related disorders. Genome Research. 25: 142-54. PMID 25378250 DOI: 10.1101/Gr.178855.114 |
0.714 |
|
| 2014 |
Kichaev G, Yang WY, Lindstrom S, Hormozdiari F, Eskin E, Price AL, Kraft P, Pasaniuc B. Integrating functional data to prioritize causal variants in statistical fine-mapping studies. Plos Genetics. 10: e1004722. PMID 25357204 DOI: 10.1371/Journal.Pgen.1004722 |
0.398 |
|
| 2014 |
Campbell CD, Mohajeri K, Malig M, Hormozdiari F, Nelson B, Du G, Patterson KM, Eng C, Torgerson DG, Hu D, Herman C, Chong JX, Ko A, O'Roak BJ, Krumm N, et al. Whole-genome sequencing of individuals from a founder population identifies candidate genes for asthma. Plos One. 9: e104396. PMID 25116239 DOI: 10.1371/Journal.Pone.0104396 |
0.801 |
|
| 2014 |
Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E. Identifying causal variants at loci with multiple signals of association. Genetics. 198: 497-508. PMID 25104515 DOI: 10.1534/Genetics.114.167908 |
0.333 |
|
| 2014 |
Francioli LC, Menelaou A, Pulit SL, Van Dijk F, Palamara PF, Elbers CC, Neerincx PBT, Ye K, Guryev V, Kloosterman WP, Deelen P, Abdellaoui A, Van Leeuwen EM, Van Oven M, Vermaat M, ... Hormozdiari F, et al. Whole-genome sequence variation, population structure and demographic history of the Dutch population Nature Genetics. 46: 818-825. PMID 24974849 DOI: 10.1038/Ng.3021 |
0.582 |
|
| 2014 |
Hormozdiari F, Joo JW, Wadia A, Guan F, Ostrosky R, Sahai A, Eskin E. Privacy preserving protocol for detecting genetic relatives using rare variants. Bioinformatics (Oxford, England). 30: i204-11. PMID 24931985 DOI: 10.1093/Bioinformatics/Btu294 |
0.431 |
|
| 2014 |
Hach F, Sarrafi I, Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC. mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications. Nucleic Acids Research. 42: W494-500. PMID 24810850 DOI: 10.1093/Nar/Gku370 |
0.664 |
|
| 2014 |
He D, Furlotte NA, Hormozdiari F, Joo JW, Wadia A, Ostrovsky R, Sahai A, Eskin E. Identifying genetic relatives without compromising privacy. Genome Research. 24: 664-72. PMID 24614977 DOI: 10.1101/Gr.153346.112 |
0.387 |
|
| 2014 |
Ohmen J, Kang EY, Li X, Joo JW, Hormozdiari F, Zheng QY, Davis RC, Lusis AJ, Eskin E, Friedman RA. Genome-wide association study for age-related hearing loss (AHL) in the mouse: a meta-analysis. Journal of the Association For Research in Otolaryngology : Jaro. 15: 335-52. PMID 24570207 DOI: 10.1007/S10162-014-0443-2 |
0.386 |
|
| 2014 |
Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, et al. Genome sequencing highlights the dynamic early history of dogs. Plos Genetics. 10: e1004016. PMID 24453982 DOI: 10.1371/Journal.Pgen.1004016 |
0.713 |
|
| 2014 |
Frésard L, Leroux S, Servin B, Gourichon D, Dehais P, Cristobal MS, Marsaud N, Vignoles F, Bed'hom B, Coville JL, Hormozdiari F, Beaumont C, Zerjal T, Vignal A, Morisson M, et al. Transcriptome-wide investigation of genomic imprinting in chicken. Nucleic Acids Research. 42: 3768-82. PMID 24452801 DOI: 10.1093/Nar/Gkt1390 |
0.448 |
|
| 2013 |
Eskin I, Hormozdiari F, Conde L, Riby J, Skibola CF, Eskin E, Halperin E. eALPS: estimating abundance levels in pooled sequencing using available genotyping data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 861-77. PMID 24144111 DOI: 10.1089/cmb.2013.0105 |
0.347 |
|
| 2013 |
Hormozdiari F, Konkel MK, Prado-Martinez J, Chiatante G, Herraez IH, Walker JA, Nelson B, Alkan C, Sudmant PH, Huddleston J, Catacchio CR, Ko A, Malig M, Baker C, et al. Rates and patterns of great ape retrotransposition. Proceedings of the National Academy of Sciences of the United States of America. 110: 13457-62. PMID 23884656 DOI: 10.1073/Pnas.1310914110 |
0.787 |
|
| 2013 |
Yang WY, Hormozdiari F, Wang Z, He D, Pasaniuc B, Eskin E. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinformatics (Oxford, England). 29: 2245-52. PMID 23825370 DOI: 10.1093/Bioinformatics/Btt386 |
0.38 |
|
| 2013 |
Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, ... Hormozdiari F, et al. Great ape genetic diversity and population history. Nature. 499: 471-5. PMID 23823723 DOI: 10.1038/Nature12228 |
0.785 |
|
| 2013 |
Prado-Martinez J, Hernando-Herraez I, Lorente-Galdos B, Dabad M, Ramirez O, Baeza-Delgado C, Morcillo-Suarez C, Alkan C, Hormozdiari F, Raineri E, Estellé J, Fernandez-Callejo M, Valles M, Ritscher L, Schöneberg T, et al. The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild. Bmc Genomics. 14: 363. PMID 23721540 DOI: 10.1186/1471-2164-14-363 |
0.801 |
|
| 2013 |
Wang Z, Hormozdiari F, Yang WY, Halperin E, Eskin E. CNVeM: copy number variation detection using uncertainty of read mapping. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 224-36. PMID 23421794 DOI: 10.1089/Cmb.2012.0258 |
0.387 |
|
| 2013 |
Xin H, Lee D, Hormozdiari F, Yedkar S, Mutlu O, Alkan C. Accelerating read mapping with FastHASH. Bmc Genomics. 14: S13. PMID 23369189 DOI: 10.1186/1471-2164-14-S1-S13 |
0.588 |
|
| 2012 |
Lapuk AV, Wu C, Wyatt AW, McPherson A, McConeghy BJ, Brahmbhatt S, Mo F, Zoubeidi A, Anderson S, Bell RH, Haegert A, Shukin R, Wang Y, Fazli L, Hurtado-Coll A, ... ... Hormozdiari F, et al. From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer. The Journal of Pathology. 227: 286-97. PMID 22553170 DOI: 10.1002/Path.4047 |
0.329 |
|
| 2012 |
Wu C, Wyatt AW, Lapuk AV, McPherson A, McConeghy BJ, Bell RH, Anderson S, Haegert A, Brahmbhatt S, Shukin R, Mo F, Li E, Fazli L, Hurtado-Coll A, Jones EC, ... Hormozdiari F, et al. Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer. The Journal of Pathology. 227: 53-61. PMID 22294438 DOI: 10.1002/Path.3987 |
0.463 |
|
| 2011 |
Hormozdiari F, Hajirasouliha I, McPherson A, Eichler EE, Sahinalp SC. Simultaneous structural variation discovery among multiple paired-end sequenced genomes. Genome Research. 21: 2203-12. PMID 22048523 DOI: 10.1101/Gr.120501.111 |
0.688 |
|
| 2011 |
Parrish N, Hormozdiari F, Eskin E. Assembly of non-unique insertion content using next-generation sequencing. Bmc Bioinformatics. 12: S3. PMID 21989261 DOI: 10.1186/1471-2105-12-S6-S3 |
0.416 |
|
| 2011 |
Ventura M, Catacchio CR, Alkan C, Marques-Bonet T, Sajjadian S, Graves TA, Hormozdiari F, Navarro A, Malig M, Baker C, Lee C, Turner EH, Chen L, Kidd JM, Archidiacono N, et al. Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee. Genome Research. 21: 1640-9. PMID 21685127 DOI: 10.1101/Gr.124461.111 |
0.836 |
|
| 2011 |
McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, et al. deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. Plos Computational Biology. 7: e1001138. PMID 21625565 DOI: 10.1371/Journal.Pcbi.1001138 |
0.385 |
|
| 2011 |
Hormozdiari F, Hach F, Sahinalp SC, Eichler EE, Alkan C. Sensitive and fast mapping of di-base encoded reads. Bioinformatics (Oxford, England). 27: 1915-21. PMID 21586516 DOI: 10.1093/Bioinformatics/Btr303 |
0.712 |
|
| 2011 |
He D, Hormozdiari F, Furlotte N, Eskin E. Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions. Bioinformatics (Oxford, England). 27: 1513-20. PMID 21505028 DOI: 10.1093/Bioinformatics/Btr169 |
0.402 |
|
| 2011 |
McPherson A, Wu C, Hajirasouliha I, Hormozdiari F, Hach F, Lapuk A, Volik S, Shah S, Collins C, Sahinalp SC. Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. Bioinformatics (Oxford, England). 27: 1481-8. PMID 21478487 DOI: 10.1093/Bioinformatics/Btr184 |
0.488 |
|
| 2011 |
Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, Fu Y, Grubert F, Hajirasouliha I, Hormozdiari F, et al. Mapping copy number variation by population-scale genome sequencing. Nature. 470: 59-65. PMID 21293372 DOI: 10.1038/Nature09708 |
0.805 |
|
| 2011 |
Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE. Alu repeat discovery and characterization within human genomes. Genome Research. 21: 840-9. PMID 21131385 DOI: 10.1101/Gr.115956.110 |
0.776 |
|
| 2011 |
Hormozdiari F, Hajirasouliha I, McPherson A, Eichler EE, Sahinalp SC. Simultaneous structural variation discovery in multiple paired-end sequenced genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6577: 104-105. DOI: 10.1007/978-3-642-20036-6_11 |
0.63 |
|
| 2011 |
Bebek G, Chance M, Koyuturk M, Price ND, De La Vega FM, Bustamante CD, Leal SM, Foster J, Moore J, Bernauer J, Flores S, Huang X, Shin S, Zhou R, Alkan C, ... ... Hormozdiari F, et al. Pacific symposium on biocomputing 2011 Pacific Symposium On Biocomputing 2011, Psb 2011. v. |
0.406 |
|
| 2010 |
Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, Sahinalp SC. mrsFAST: a cache-oblivious algorithm for short-read mapping. Nature Methods. 7: 576-7. PMID 20676076 DOI: 10.1038/Nmeth0810-576 |
0.744 |
|
| 2010 |
Hormozdiari F, Hajirasouliha I, Dao P, Hach F, Yorukoglu D, Alkan C, Eichler EE, Sahinalp SC. Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics (Oxford, England). 26: i350-7. PMID 20529927 DOI: 10.1093/Bioinformatics/Btq216 |
0.733 |
|
| 2010 |
Hajirasouliha I, Hormozdiari F, Alkan C, Kidd JM, Birol I, Eichler EE, Sahinalp SC. Detection and characterization of novel sequence insertions using paired-end next-generation sequencing. Bioinformatics (Oxford, England). 26: 1277-83. PMID 20385726 DOI: 10.1093/Bioinformatics/Btq152 |
0.81 |
|
| 2010 |
Schönhuth A, Salari R, Hormozdiari F, Cherkasov A, Sahinalp SC. Towards improved assessment of functional similarity in large-scale screens: a study on indel length. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1-20. PMID 20078394 DOI: 10.1089/Cmb.2009.0031 |
0.395 |
|
| 2009 |
Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O, Sahinalp SC, Gibbs RA, Eichler EE. Personalized copy number and segmental duplication maps using next-generation sequencing. Nature Genetics. 41: 1061-7. PMID 19718026 DOI: 10.1038/Ng.437 |
0.82 |
|
| 2009 |
Lee S, Hormozdiari F, Alkan C, Brudno M. MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions. Nature Methods. 6: 473-4. PMID 19483690 DOI: 10.1038/Nmeth.F.256 |
0.601 |
|
| 2009 |
Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC. Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome Research. 19: 1270-8. PMID 19447966 DOI: 10.1101/Gr.088633.108 |
0.775 |
|
| 2009 |
Hormozdiari F, Salari R, Hsing M, Schönhuth A, Chan SK, Sahinalp SC, Cherkasov A. The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 159-67. PMID 19193143 DOI: 10.1089/Cmb.2008.03Tt |
0.307 |
|
| 2009 |
Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC. Combinatorial algorithms for structural variation detection in high throughput sequenced genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5541: 218-219. DOI: 10.1007/978-3-642-02008-7_16 |
0.716 |
|
| 2008 |
Hajirasouliha I, Hormozdiari F, Sahinalp SC, Birol I. Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. Bioinformatics (Oxford, England). 24: i32-40. PMID 18586730 DOI: 10.1093/bioinformatics/btn173 |
0.384 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2007 |
Chan SK, Hsing M, Hormozdiari F, Cherkasov A. Relationship between insertion/deletion (indel) frequency of proteins and essentiality. Bmc Bioinformatics. 8: 227. PMID 17598914 DOI: 10.1186/1471-2105-8-227 |
0.287 |
|
| 2015 |
Yang WY, Hormozdiari F, Eskin E, Pasaniuc B. A spatial haplotype copying model with applications to genotype imputation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 451-62. PMID 25526526 DOI: 10.1089/Cmb.2014.0151 |
0.265 |
|
| 2015 |
Park DS, Baran Y, Hormozdiari F, Eng C, Torgerson DG, Burchard EG, Zaitlen N. PIGS: improved estimates of identity-by-descent probabilities by probabilistic IBD graph sampling. Bmc Bioinformatics. 16: S9. PMID 25860540 DOI: 10.1186/1471-2105-16-S5-S9 |
0.264 |
|
| 2010 |
Hormozdiari F, Salari R, Bafna V, Sahinalp SC. Protein-protein interaction network evaluation for identifying potential drug targets. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 669-84. PMID 20500021 DOI: 10.1089/Cmb.2009.0032 |
0.252 |
|
| 2022 |
Chow JC, Hormozdiari F. Prediction of Neurodevelopmental Disorders Based on De Novo Coding Variation. Journal of Autism and Developmental Disorders. PMID 35596027 DOI: 10.1007/s10803-022-05586-z |
0.24 |
|
| 2019 |
Mangul S, Martin LS, Langmead B, Sanchez-Galan JE, Toma I, Hormozdiari F, Pevzner P, Eskin E. How bioinformatics and open data can boost basic science in countries and universities with limited resources. Nature Biotechnology. 37: 324-326. PMID 30833765 DOI: 10.1038/S41587-019-0053-Y |
0.23 |
|
| 2014 |
Hasin-Brumshtein Y, Hormozdiari F, Martin L, van Nas A, Eskin E, Lusis AJ, Drake TA. Allele-specific expression and eQTL analysis in mouse adipose tissue. Bmc Genomics. 15: 471. PMID 24927774 DOI: 10.1186/1471-2164-15-471 |
0.228 |
|
| 2014 |
Orozco LD, Rubbi L, Martin LJ, Fang F, Hormozdiari F, Che N, Smith AD, Lusis AJ, Pellegrini M. Intergenerational genomic DNA methylation patterns in mouse hybrid strains. Genome Biology. 15: R68. PMID 24887417 DOI: 10.1186/Gb-2014-15-5-R68 |
0.217 |
|
| 2013 |
Lagarrigue S, Hormozdiari F, Martin LJ, Lecerf F, Hasin Y, Rau C, Hagopian R, Xiao Y, Yan J, Drake TA, Ghazalpour A, Eskin E, Lusis AJ. Limited RNA editing in exons of mouse liver and adipose. Genetics. 193: 1107-15. PMID 23410828 DOI: 10.1534/Genetics.112.149054 |
0.214 |
|
| 2022 |
Chow JC, Zhou R, Hormozdiari F. MAGI-MS: multiple seed-centric module discovery. Bioinformatics Advances. 2: vbac025. PMID 36699383 DOI: 10.1093/bioadv/vbac025 |
0.2 |
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| 2023 |
Tomkova M, Tomek J, Chow J, McPherson JD, Segal DJ, Hormozdiari F. Dr.Nod: computational framework for discovery of regulatory non-coding drivers in tissue-matched distal regulatory elements. Nucleic Acids Research. PMID 36625266 DOI: 10.1093/nar/gkac1251 |
0.198 |
|
| 2013 |
Lagarrigue S, Martin L, Hormozdiari F, Roux PF, Pan C, van Nas A, Demeure O, Cantor R, Ghazalpour A, Eskin E, Lusis AJ. Analysis of allele-specific expression in mouse liver by RNA-Seq: a comparison with Cis-eQTL identified using genetic linkage. Genetics. 195: 1157-66. PMID 24026101 DOI: 10.1534/Genetics.113.153882 |
0.193 |
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| 2008 |
Salari R, Schönhuth A, Hormozdiari F, Cherkasov A, Sahinalp SC. The relation between indel length and functional divergence: A formal study Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5251: 330-341. DOI: 10.1007/978-3-540-87361-7_28 |
0.111 |
|
| 2009 |
Colak R, Hormozdiari F, Moser F, Schönhuth A, Holman J, Ester M, Sahinalp SC. Dense graphlet statistics of protein interaction and random networks. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 178-89. PMID 19213135 |
0.105 |
|
| 2014 |
Yang WY, Hormozdiari F, Eskin E, Pasaniuc B. A spatial-aware haplotype copying model with applications to genotype imputation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8394: 371-384. DOI: 10.1007/978-3-319-05269-4_30 |
0.099 |
|
| 2008 |
Alon N, Dao P, Hajirasouliha I, Hormozdiari F, Sahinalp SC. Biomolecular network motif counting and discovery by color coding. Bioinformatics (Oxford, England). 24: i241-9. PMID 18586721 DOI: 10.1093/bioinformatics/btn163 |
0.091 |
|
| 2010 |
Sushko I, Novotarskyi S, Körner R, Pandey AK, Cherkasov A, Li J, Gramatica P, Hansen K, Schroeter T, Müller KR, Xi L, Liu H, Yao X, Öberg T, Hormozdiari F, et al. Applicability domains for classification problems: Benchmarking of distance to models for Ames mutagenicity set. Journal of Chemical Information and Modeling. 50: 2094-111. PMID 21033656 DOI: 10.1021/Ci100253R |
0.083 |
|
| 2009 |
Dao P, Schönhuth A, Hormozdiari F, Hajirasouliha I, Sahinalp SC, Ester M. Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5724: 37-48. DOI: 10.1007/978-3-642-04241-6_4 |
0.071 |
|
| 2011 |
Cherkasov A, Hsing M, Zoraghi R, Foster LJ, See RH, Stoynov N, Jiang J, Kaur S, Lian T, Jackson L, Gong H, Swayze R, Amandoron E, Hormozdiari F, Dao P, et al. Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus. Journal of Proteome Research. 10: 1139-50. PMID 21166474 DOI: 10.1021/Pr100918U |
0.068 |
|
| 2007 |
Hormozdiari F, Rajabi A, Khonsari A. Mathematical analysis of delay line to wavelength allocation algorithms in optical networking Ieee International Workshop On Modeling, Analysis, and Simulation of Computer and Telecommunication Systems - Proceedings. 418-423. DOI: 10.1109/MASCOTS.2007.32 |
0.057 |
|
| 2007 |
Hormozdiari F, Berenbrink P, Przulj N, Sahinalp SC. Not all scale-free networks are born equal: the role of the seed graph in PPI network evolution. Plos Computational Biology. 3: e118. PMID 17616981 DOI: 10.1371/journal.pcbi.0030118 |
0.051 |
|
| 2008 |
Rajabi A, Dadlani A, Hormozdiari F, Khonsari A, Kianrad A, Razi HS. Analysis of the impact of wavelength converters on contention resolution in optical burst switching Proceedings - 2nd Asia International Conference On Modelling and Simulation, Ams 2008. 259-264. DOI: 10.1109/AMS.2008.15 |
0.039 |
|
| 2012 |
Dao P, Hormozdiari F, Hajirasouliha I, Ester M, Sahinalp SC. Proteome network emulating models Functional Coherence of Molecular Networks in Bioinformatics. 2147483647: 69-95. DOI: 10.1007/978-1-4614-0320-3_4 |
0.029 |
|
| 2007 |
Hormozdiari F, Berenbrink P, Pržulj N, Sahinalp C. Not all scale free networks are born equal: The role of the seed graph in PPI network emulation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4532: 1-13. |
0.028 |
|
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