| Year |
Citation |
Score |
| 2023 |
DeGorter MK, Goddard PC, Karakoc E, Kundu S, Yan SM, Nachun D, Abell N, Aguirre M, Carstensen T, Chen Z, Durrant M, Dwaracherla VR, Feng K, Gloudemans MJ, Hunter N, et al. Transcriptomics and chromatin accessibility in multiple African population samples. Biorxiv : the Preprint Server For Biology. PMID 37986808 DOI: 10.1101/2023.11.04.564839 |
0.317 |
|
| 2023 |
Yazıcı G, Vatandaslar BK, Canturk IA, Aydinli FI, Arici Duz O, Karakoç E, Kerman BE, Alkan C. Identification of Protein-Protein Interaction Bridges for Multiple Sclerosis. Bioinformatics (Oxford, England). PMID 37018152 DOI: 10.1093/bioinformatics/btad175 |
0.457 |
|
| 2015 |
Lin YL, Pavlidis P, Karakoc E, Ajay J, Gokcumen O. The evolution and functional impact of human deletion variants shared with archaic hominin genomes. Molecular Biology and Evolution. 32: 1008-19. PMID 25556237 DOI: 10.1093/Molbev/Msu405 |
0.426 |
|
| 2014 |
Dao P, Numanagi? I, Lin YY, Hach F, Karakoc E, Donmez N, Collins C, Eichler EE, Sahinalp SC. ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms. Bioinformatics (Oxford, England). 30: 644-51. PMID 24130305 DOI: 10.1093/Bioinformatics/Btt591 |
0.481 |
|
| 2013 |
Krumm N, O'Roak BJ, Karakoc E, Mohajeri K, Nelson B, Vives L, Jacquemont S, Munson J, Bernier R, Eichler EE. Transmission disequilibrium of small CNVs in simplex autism. American Journal of Human Genetics. 93: 595-606. PMID 24035194 DOI: 10.1016/J.Ajhg.2013.07.024 |
0.731 |
|
| 2013 |
Korvatska O, Strand NS, Berndt JD, Strovas T, Chen DH, Leverenz JB, Kiianitsa K, Mata IF, Karakoc E, Greenup JL, Bonkowski E, Chuang J, Moon RT, Eichler EE, Nickerson DA, et al. Altered splicing of ATP6AP2 causes X-linked parkinsonism with spasticity (XPDS). Human Molecular Genetics. 22: 3259-68. PMID 23595882 DOI: 10.1093/Hmg/Ddt180 |
0.552 |
|
| 2012 |
Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, et al. The bonobo genome compared with the chimpanzee and human genomes. Nature. 486: 527-31. PMID 22722832 DOI: 10.1038/Nature11128 |
0.692 |
|
| 2012 |
O'Roak BJ, Vives L, Girirajan S, Karakoc E, Krumm N, Coe BP, Levy R, Ko A, Lee C, Smith JD, Turner EH, Stanaway IB, Vernot B, Malig M, Baker C, et al. Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations. Nature. 485: 246-50. PMID 22495309 DOI: 10.1038/Nature10989 |
0.683 |
|
| 2012 |
Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, ... ... Karakoc E, et al. Insights into hominid evolution from the gorilla genome sequence. Nature. 483: 169-75. PMID 22398555 DOI: 10.1038/Nature10842 |
0.708 |
|
| 2012 |
Karakoc E, Alkan C, O'Roak BJ, Dennis MY, Vives L, Mark K, Rieder MJ, Nickerson DA, Eichler EE. Detection of structural variants and indels within exome data. Nature Methods. 9: 176-8. PMID 22179552 DOI: 10.1038/Nmeth.1810 |
0.714 |
|
| 2012 |
O'Roak BJ, Deriziotis P, Lee C, Vives L, Schwartz JJ, Girirajan S, Karakoc E, MacKenzie AP, Ng SB, Baker C, Rieder MJ, Nickerson DA, Bernier R, Fisher SE, Shendure J, et al. Corrigendum: Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations (Nature Genetics (2011) 43, (585-589)) Nature Genetics. 44: 471. DOI: 10.1038/Ng0412-471 |
0.756 |
|
| 2011 |
O'Roak BJ, Deriziotis P, Lee C, Vives L, Schwartz JJ, Girirajan S, Karakoc E, Mackenzie AP, Ng SB, Baker C, Rieder MJ, Nickerson DA, Bernier R, Fisher SE, Shendure J, et al. Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations. Nature Genetics. 43: 585-9. PMID 21572417 DOI: 10.1038/Ng.835 |
0.768 |
|
| 2009 |
Salari R, Aksay C, Karakoc E, Unrau PJ, Hajirasouliha I, Sahinalp SC. smyRNA: a novel Ab initio ncRNA gene finder. Plos One. 4: e5433. PMID 19415115 DOI: 10.1371/Journal.Pone.0005433 |
0.429 |
|
| 2007 |
Aksay C, Salari R, Karakoc E, Alkan C, Sahinalp SC. taveRNA: a web suite for RNA algorithms and applications. Nucleic Acids Research. 35: W325-9. PMID 17488837 DOI: 10.1093/Nar/Gkm303 |
0.518 |
|
| 2006 |
Alkan C, Karakoç E, Nadeau JH, Sahinalp SC, Zhang K. RNA-RNA interaction prediction and antisense RNA target search. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 267-82. PMID 16597239 DOI: 10.1089/Cmb.2006.13.267 |
0.54 |
|
| 2006 |
Alkan C, Karakoc E, Cenk Sahinalp S, Unrau P, Alexander Ebhardt H, Zhang K, Buhler J. RNA secondary structure prediction via energy density minimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 130-142. DOI: 10.1007/11732990_12 |
0.46 |
|
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