Can Alkan, Ph.D. - Publications

Affiliations: 
Genome Sciences University of Washington, Seattle, Seattle, WA 

182 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, et al. Technology dictates algorithms: recent developments in read alignment. Genome Biology. 22: 249. PMID 34446078 DOI: 10.1186/s13059-021-02443-7  1
2020 Alser M, Shahroodi T, Gómez-Luna J, Alkan C, Mutlu O. SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs. Bioinformatics (Oxford, England). PMID 33315064 DOI: 10.1093/bioinformatics/btaa1015  1
2020 Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM, Boutros PC, Sahraeian SME, Huang V, Rouette A, Alexander N, Mason CE, ... ... Alkan C, et al. Author Correction: A robust benchmark for detection of germline large deletions and insertions. Nature Biotechnology. PMID 32699374 DOI: 10.1038/S41587-020-0640-Y  1
2020 Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM, Boutros PC, Sahraeian SME, Huang V, Rouette A, Alexander N, Mason CE, ... ... Alkan C, et al. A robust benchmark for detection of germline large deletions and insertions. Nature Biotechnology. PMID 32541955 DOI: 10.1038/S41587-020-0538-8  1
2020 Karaoğlanoğlu F, Ricketts C, Ebren E, Rasekh ME, Hajirasouliha I, Alkan C. VALOR2: characterization of large-scale structural variants using linked-reads. Genome Biology. 21: 72. PMID 32192518 DOI: 10.1186/S13059-020-01975-8  1
2020 Firtina C, Kim JS, Alser M, Cali DS, Cicek AE, Alkan C, Mutlu O. Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm. Bioinformatics (Oxford, England). PMID 32167530 DOI: 10.1093/Bioinformatics/Btaa179  1
2020 Alser M, Bingöl Z, Cali DS, Kim JS, Ghose S, Alkan C, Mutlu O. Accelerating Genome Analysis: A Primer on an Ongoing Journey Ieee Micro. 40: 65-75. DOI: 10.1109/Mm.2020.3013728  1
2019 Demir G, Alkan C. Characterizing microsatellite polymorphisms using assembly-based and mapping-based tools. Turkish Journal of Biology = Turk Biyoloji Dergisi. 43: 264-273. PMID 31496881 DOI: 10.3906/Biy-1903-16  1
2019 Soylev A, Le T, Amini H, Alkan C, Hormozdiari F. Discovery of tandem and interspersed segmental duplications using high throughput sequencing. Bioinformatics (Oxford, England). PMID 30937433 DOI: 10.1093/Bioinformatics/Btz237  1
2019 Alser M, Hassan H, Kumar A, Mutlu O, Alkan C. Shouji: A Fast and Efficient Pre-Alignment Filter for Sequence Alignment. Bioinformatics (Oxford, England). PMID 30923804 DOI: 10.1093/Bioinformatics/Btz234  1
2018 Dal E, Alkan C. Evaluation of genome scaffolding tools using pooled clone sequencing. Turkish Journal of Biology = Turk Biyoloji Dergisi. 42: 471-476. PMID 30983868 DOI: 10.3906/Biy-1805-42  0.24
2018 Numanagic I, Gökkaya AS, Zhang L, Berger B, Alkan C, Hach F. Fast characterization of segmental duplications in genome assemblies. Bioinformatics (Oxford, England). 34: i706-i714. PMID 30423092 DOI: 10.1093/Bioinformatics/Bty586  1
2018 Firtina C, Bar-Joseph Z, Alkan C, Cicek AE. Hercules: a profile HMM-based hybrid error correction algorithm for long reads. Nucleic Acids Research. PMID 30124947 DOI: 10.1093/Nar/Gky724  1
2018 Ozercan HI, Ileri AM, Ayday E, Alkan C. Realizing the potential of blockchain technologies in genomics. Genome Research. PMID 30076130 DOI: 10.1101/Gr.207464.116  1
2018 Kahveci F, Alkan C. Whole-Genome Shotgun Sequence CNV Detection Using Read Depth. Methods in Molecular Biology (Clifton, N.J.). 1833: 61-72. PMID 30039363 DOI: 10.1007/978-1-4939-8666-8_4  0.01
2018 Kim JS, Senol Cali D, Xin H, Lee D, Ghose S, Alser M, Hassan H, Ergin O, Alkan C, Mutlu O. GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies. Bmc Genomics. 19: 89. PMID 29764378 DOI: 10.1186/s12864-018-4460-0  1
2018 Senol Cali D, Kim JS, Ghose S, Alkan C, Mutlu O. Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions. Briefings in Bioinformatics. PMID 29617724 DOI: 10.1093/Bib/Bby017  1
2018 Saatci Ö, Borgoni S, Akbulut Ö, Durmuş S, Raza U, Eyüpoğlu E, Alkan C, Akyol A, Kütük Ö, Wiemann S, Şahin Ö. Targeting PLK1 overcomes T-DM1 resistance via CDK1-dependent phosphorylation and inactivation of Bcl-2/xL in HER2-positive breast cancer. Oncogene. PMID 29391599 DOI: 10.1038/S41388-017-0108-9  0.01
2018 Marschall T, Marz M, Abeel T, Dijkstra L, Dutilh BE, Ghaffaari A, Kersey P, Kloosterman WP, Makinen V, Novak AM, Paten B, Porubsky D, Rivals E, Alkan C, Baaijens JA, et al. Computational pan-genomics: status, promises and challenges. Briefings in Bioinformatics. 19: 118-135. PMID 27769991 DOI: 10.1093/Bib/Bbw089  1
2017 Kavak P, Lin YY, Numanagic I, Asghari H, Güngör T, Alkan C, Hach F. Discovery and genotyping of novel sequence insertions in many sequenced individuals. Bioinformatics (Oxford, England). 33: i161-i169. PMID 28881988 DOI: 10.1093/Bioinformatics/Btx254  1
2017 Soylev A, Kockan C, Hormozdiari F, Alkan C. Toolkit for automated and rapid discovery of structural variants. Methods (San Diego, Calif.). PMID 28583483 DOI: 10.1016/J.Ymeth.2017.05.030  1
2017 Alser M, Hassan H, Xin H, Ergin O, Mutlu O, Alkan C. GateKeeper: A New Hardware Architecture for Accelerating Pre-Alignment in DNA Short Read Mapping. Bioinformatics (Oxford, England). PMID 28575161 DOI: 10.1093/Bioinformatics/Btx342  1
2017 Eslami Rasekh M, Chiatante G, Miroballo M, Tang J, Ventura M, Amemiya CT, Eichler EE, Antonacci F, Alkan C. Discovery of large genomic inversions using long range information. Bmc Genomics. 18: 65. PMID 28073353 DOI: 10.1186/S12864-016-3444-1  1
2017 Ersan P, Tokat U, Eyupoglu E, Raza U, Riazalhosseini Y, Alkan C, Thieffry D, Gautheret D, Sahin O. Abstract 2848: Identifying and targeting competing endogenous RNA (ceRNAs) networks to inhibit lung metastasis in triple negative breast cancer Cancer Research. 77: 2848-2848. DOI: 10.1158/1538-7445.Am2017-2848  0.01
2016 Cardone MF, D'Addabbo P, Alkan C, Bergamini C, Catacchio CR, Anaclerio F, Chiatante G, Marra A, Giannuzzi G, Perniola R, Ventura M, Antonacci D. Inter-varietal structural variation in grapevine genomes. The Plant Journal : For Cell and Molecular Biology. PMID 27419916 DOI: 10.1111/Tpj.13274  1
2016 Firtina C, Alkan C. On genomic repeats and reproducibility. Bioinformatics (Oxford, England). PMID 27153582 DOI: 10.1093/Bioinformatics/Btw139  1
2016 Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, et al. Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. Plos Genetics. 12: e1005851. PMID 26943675 DOI: 10.1371/Journal.Pgen.1005851  1
2016 Sarı A, Alkan C, Biçer A. Thermal energy storage characteristics of micro-nanoencapsulated heneicosane and octacosane with poly(methylmethacrylate) shell Journal of Microencapsulation. 1-8. DOI: 10.3109/02652048.2016.1144820  1
2016 Alay Aksoy S, Alkan C, Tözüm MS, Demirbağ S, Altun Anayurt R, Ulcay Y. Preparation and textile application of poly(methyl methacrylate-co-methacrylic acid)/n-octadecane and n-eicosane microcapsules Journal of the Textile Institute. 1-14. DOI: 10.1080/00405000.2015.1133128  1
2016 Alser M, Almadhoun N, Nouri A, Alkan C, Ayday E. Can you really anonymize the donors of genomic data in today’s digital world? Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9481: 237-244. DOI: 10.1007/978-3-319-29883-2_16  1
2015 Xin H, Nahar S, Zhu R, Emmons J, Pekhimenko G, Kingsford C, Alkan C, Mutlu O. Optimal Seed Solver: Optimizing Seed Selection in Read Mapping. Bioinformatics (Oxford, England). PMID 26568624 DOI: 10.1093/Bioinformatics/Btv670  1
2015 Acar Ö, Özkurt E, Demir G, Saraç H, Alkan C, Esen T, Somel M, Lack NA. Determining the origin of synchronous multifocal bladder cancer by exome sequencing. Bmc Cancer. 15: 871. PMID 26553077 DOI: 10.1186/S12885-015-1859-8  1
2015 Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Hsi-Yang Fritz M, Konkel MK, Malhotra A, Stütz AM, Shi X, Paolo Casale F, ... ... Alkan C, et al. An integrated map of structural variation in 2,504 human genomes. Nature. 526: 75-81. PMID 26432246 DOI: 10.1038/Nature15394  1
2015 Kavak P, Yüksel B, Aksu S, Kulekci MO, Güngör T, Hach F, Şahinalp SC, Alkan C, Sağıroğlu MŞ. Robustness of Massively Parallel Sequencing Platforms. Plos One. 10: e0138259. PMID 26382624 DOI: 10.1371/Journal.Pone.0138259  1
2015 Alkan C, Zapata S, Bichaud L, Moureau G, Lemey P, Firth AE, Gritsun TS, Gould EA, de Lamballerie X, Depaquit J, Charrel RN. Ecuador Paraiso Escondido Virus, a New Flavivirus Isolated from New World Sand Flies in Ecuador, Is the First Representative of a Novel Clade in the Genus Flavivirus. Journal of Virology. 89: 11773-85. PMID 26355096 DOI: 10.1128/JVI.01543-15  1
2015 Alkan C, Allal-Ikhlef AB, Alwassouf S, Baklouti A, Piorkowski G, de Lamballerie X, Izri A, Charrel RN. Virus isolation, genetic characterization and seroprevalence of Toscana virus in Algeria. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. 21: 1040.e1-9. PMID 26235198 DOI: 10.1016/j.cmi.2015.07.012  1
2015 Alkan C, Alwassouf S, Piorkowski G, Bichaud L, Tezcan S, Dincer E, Ergunay K, Ozbel Y, Alten B, de Lamballerie X, Charrel RN. Isolation, genetic characterization, and seroprevalence of Adana virus, a novel phlebovirus belonging to the Salehabad virus complex, in Turkey. Journal of Virology. 89: 4080-91. PMID 25653443 DOI: 10.1128/JVI.03027-14  1
2015 Küçük C, Jiang B, Hu X, Zhang W, Chan JK, Xiao W, Lack N, Alkan C, Williams JC, Avery KN, Kavak P, Scuto A, Sen E, Gaulard P, Staudt L, et al. Activating mutations of STAT5B and STAT3 in lymphomas derived from γδ-T or NK cells. Nature Communications. 6: 6025. PMID 25586472 DOI: 10.1038/Ncomms7025  1
2015 Xin H, Greth J, Emmons J, Pekhimenko G, Kingsford C, Alkan C, Mutlu O. Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping. Bioinformatics (Oxford, England). 31: 1553-60. PMID 25577434 DOI: 10.1093/Bioinformatics/Btu856  1
2015 Lee D, Hormozdiari F, Xin H, Hach F, Mutlu O, Alkan C. Fast and accurate mapping of Complete Genomics reads. Methods (San Diego, Calif.). 79: 3-10. PMID 25461772 DOI: 10.1016/J.Ymeth.2014.10.012  1
2015 Alkan C, Aksoy SA, Anayurt RA. Synthesis of poly(methyl methacrylate-co-acrylic acid)/n-eicosane microcapsules for thermal comfort in textiles Textile Research Journal. 85: 2051-2058. DOI: 10.1177/0040517514548751  1
2015 Sari A, Alkan C, Döğüşcü DK, Kizil C. Micro/nano encapsulated n-tetracosane and n-octadecane eutectic mixture with polystyrene shell for low-temperature latent heat thermal energy storage applications Solar Energy. 115: 195-203. DOI: 10.1016/j.solener.2015.02.035  1
2015 Sari A, Alkan C, Özcan AN. Synthesis and characterization of micro/nano capsules of PMMA/capric-stearic acid eutectic mixture for low temperature-thermal energy storage in buildings Energy and Buildings. 90: 106-113. DOI: 10.1016/j.enbuild.2015.01.013  1
2014 Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, ... ... Alkan C, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: 17230-5. PMID 25385592 DOI: 10.1073/Pnas.1410083111  1
2014 Alkan C, Kavak P, Somel M, Gokcumen O, Ugurlu S, Saygi C, Dal E, Bugra K, Güngör T, Sahinalp SC, Özören N, Bekpen C. Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa. Bmc Genomics. 15: 963. PMID 25376095 DOI: 10.1186/1471-2164-15-963  1
2014 Sakhria S, Alwassouf S, Fares W, Bichaud L, Dachraoui K, Alkan C, Zoghlami Z, de Lamballerie X, Zhioua E, Charrel RN. Presence of sandfly-borne phleboviruses of two antigenic complexes (Sandfly fever Naples virus and Sandfly fever Sicilian virus) in two different bio-geographical regions of Tunisia demonstrated by a microneutralisation-based seroprevalence study in dogs. Parasites & Vectors. 7: 476. PMID 25306250 DOI: 10.1186/s13071-014-0476-8  0.01
2014 Bichaud L, de Lamballerie X, Alkan C, Izri A, Gould EA, Charrel RN. Arthropods as a source of new RNA viruses. Microbial Pathogenesis. 77: 136-41. PMID 25239874 DOI: 10.1016/j.micpath.2014.09.002  1
2014 Tamazian G, Simonov S, Dobrynin P, Makunin A, Logachev A, Komissarov A, Shevchenko A, Brukhin V, Cherkasov N, Svitin A, Koepfli KP, Pontius J, Driscoll CA, Blackistone K, Barr C, ... ... Alkan C, et al. Annotated features of domestic cat - Felis catus genome. Gigascience. 3: 13. PMID 25143822 DOI: 10.1186/2047-217X-3-13  1
2014 Hach F, Sarrafi I, Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC. mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications. Nucleic Acids Research. 42: W494-500. PMID 24810850 DOI: 10.1093/Nar/Gku370  1
2014 Dal GM, Ergüner B, Sa??ro?lu MS, Yüksel B, Onat OE, Alkan C, Özçelik T. Early postzygotic mutations contribute to de novo variation in a healthy monozygotic twin pair. Journal of Medical Genetics. 51: 455-9. PMID 24764354 DOI: 10.1136/Jmedgenet-2013-102197  1
2014 Balenghien T, Pagès N, Goffredo M, Carpenter S, Augot D, Jacquier E, Talavera S, Monaco F, Depaquit J, Grillet C, Pujols J, Satta G, Kasbari M, Setier-Rio ML, Izzo F, ... Alkan C, et al. The emergence of Schmallenberg virus across Culicoides communities and ecosystems in Europe. Preventive Veterinary Medicine. 116: 360-9. PMID 24698329 DOI: 10.1016/j.prevetmed.2014.03.007  1
2014 Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, et al. Genome sequencing highlights the dynamic early history of dogs. Plos Genetics. 10: e1004016. PMID 24453982 DOI: 10.1371/Journal.Pgen.1004016  1
2014 Huddleston J, Ranade S, Malig M, Antonacci F, Chaisson M, Hon L, Sudmant PH, Graves TA, Alkan C, Dennis MY, Wilson RK, Turner SW, Korlach J, Eichler EE. Reconstructing complex regions of genomes using long-read sequencing technology. Genome Research. 24: 688-96. PMID 24418700 DOI: 10.1101/Gr.168450.113  1
2014 Sari A, Alkan C, Kahraman Döǧüşcü D, Biçer A. Micro/nano-encapsulated n-heptadecane with polystyrene shell for latent heat thermal energy storage Solar Energy Materials and Solar Cells. 126: 42-50. DOI: 10.1016/j.solmat.2014.03.023  1
2014 Sari A, Alkan C, Biçer A, Altuntaş A, Bilgin C. Micro/nanoencapsulated n-nonadecane with poly(methyl methacrylate) shell for thermal energy storage Energy Conversion and Management. 86: 614-621. DOI: 10.1016/j.enconman.2014.05.092  1
2014 Sari A, Alkan C, Altintaş A. Preparation, characterization and latent heat thermal energy storage properties of micro-nanoencapsulated fatty acids by polystyrene shell Applied Thermal Engineering. 73: 1158-1166. DOI: 10.1016/j.applthermaleng.2014.09.005  1
2014 Sari A, Alkan C, Bilgin C. Micro/nano encapsulation of some paraffin eutectic mixtures with poly(methyl methacrylate) shell: Preparation, characterization and latent heat thermal energy storage properties Applied Energy. 136: 217-227. DOI: 10.1016/j.apenergy.2014.09.047  1
2014 Sari A, Alkan C, Biçer A, Bilgin C. Latent heat energy storage characteristics of building composites of bentonite clay and pumice sand with different organic PCMs International Journal of Energy Research. 38: 1478-1491. DOI: 10.1002/er.3185  1
2014 Alkan C, Anayurt RA, Aksoy SA. Preparation of poly(methyl methacrylate-CO-2-hydroxyethyl methacrylate)/n-eicosane microcapsule as a thermal comfort additive in textiles Fiber Society Spring 2014 Technical Conference: Fibers For Progress 1
2013 Hormozdiari F, Konkel MK, Prado-Martinez J, Chiatante G, Herraez IH, Walker JA, Nelson B, Alkan C, Sudmant PH, Huddleston J, Catacchio CR, Ko A, Malig M, Baker C, et al. Rates and patterns of great ape retrotransposition. Proceedings of the National Academy of Sciences of the United States of America. 110: 13457-62. PMID 23884656 DOI: 10.1073/Pnas.1310914110  1
2013 Alkan C, Bichaud L, de Lamballerie X, Alten B, Gould EA, Charrel RN. Sandfly-borne phleboviruses of Eurasia and Africa: epidemiology, genetic diversity, geographic range, control measures. Antiviral Research. 100: 54-74. PMID 23872312 DOI: 10.1016/j.antiviral.2013.07.005  1
2013 Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, ... ... Alkan C, et al. Great ape genetic diversity and population history. Nature. 499: 471-5. PMID 23823723 DOI: 10.1038/Nature12228  1
2013 Prado-Martinez J, Hernando-Herraez I, Lorente-Galdos B, Dabad M, Ramirez O, Baeza-Delgado C, Morcillo-Suarez C, Alkan C, Hormozdiari F, Raineri E, Estellé J, Fernandez-Callejo M, Valles M, Ritscher L, Schöneberg T, et al. The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild. Bmc Genomics. 14: 363. PMID 23721540 DOI: 10.1186/1471-2164-14-363  1
2013 Girirajan S, Dennis MY, Baker C, Malig M, Coe BP, Campbell CD, Mark K, Vu TH, Alkan C, Cheng Z, Biesecker LG, Bernier R, Eichler EE. Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder. American Journal of Human Genetics. 92: 221-37. PMID 23375656 DOI: 10.1016/J.Ajhg.2012.12.016  1
2013 Xin H, Lee D, Hormozdiari F, Yedkar S, Mutlu O, Alkan C. Accelerating read mapping with FastHASH. Bmc Genomics. 14: S13. PMID 23369189 DOI: 10.1186/1471-2164-14-S1-S13  1
2013 Gomleksiz M, Alkan C, Erdem B. Synthesis, characterization and antibacterial activity of 2-p-tolyl-1h-imidazo[4,5-f][1,10]phenanthroline and its Co(II), Ni(II) and Cu(II) complexes Bulletin of the Chemical Society of Ethiopia. 27: 213-220. DOI: 10.4314/bcse.v27i2.6  1
2013 Sari A, Karli A, Alkan C, Karaipekli A. Polyethyl methacrylate (PEMA)/fatty acids blends as novel phase change materials for thermal energy storage Energy Sources, Part a: Recovery, Utilization and Environmental Effects. 35: 1813-1819. DOI: 10.1080/15567036.2010.531507  1
2013 Sari A, Alkan C, Bicer A. Development, characterization, and latent heat thermal energy storage properties of neopentyl glycol-fatty acid esters as new solid-liquid PCMs Industrial and Engineering Chemistry Research. 52: 18269-18275. DOI: 10.1021/ie403039n  1
2013 Gomleksiz M, Alkan C, Erdem B. Synthesis, characterization and antibacterial activity of imidazole derivatives of 1,10-phenanthroline and their Cu(II), Co(II) and Ni(II) complexes South African Journal of Chemistry. 66: 107-112.  1
2012 Hach F, Numanagic I, Alkan C, Sahinalp SC. SCALCE: boosting sequence compression algorithms using locally consistent encoding. Bioinformatics (Oxford, England). 28: 3051-7. PMID 23047557 DOI: 10.1093/Bioinformatics/Bts593  1
2012 Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, et al. A high-coverage genome sequence from an archaic Denisovan individual. Science (New York, N.Y.). 338: 222-6. PMID 22936568 DOI: 10.1126/Science.1224344  1
2012 Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, ... ... Alkan C, et al. The bonobo genome compared with the chimpanzee and human genomes. Nature. 486: 527-31. PMID 22722832 DOI: 10.1038/Nature11128  1
2012 Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, ... ... Alkan C, et al. Insights into hominid evolution from the gorilla genome sequence. Nature. 483: 169-75. PMID 22398555 DOI: 10.1038/Nature10842  1
2012 Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, Song J, Schnabel RD, Ventura M, Taylor JF, Garcia JF, Van Tassell CP, Sonstegard TS, Eichler EE, Liu GE. Copy number variation of individual cattle genomes using next-generation sequencing. Genome Research. 22: 778-90. PMID 22300768 DOI: 10.1101/Gr.133967.111  1
2012 Karakoc E, Alkan C, O'Roak BJ, Dennis MY, Vives L, Mark K, Rieder MJ, Nickerson DA, Eichler EE. Detection of structural variants and indels within exome data. Nature Methods. 9: 176-8. PMID 22179552 DOI: 10.1038/Nmeth.1810  1
2012 Casillas S, Alkan C, Antonacci F, Sudmant PH, Eichler EE, Cáceres M. Calling inversions from next-generation sequencing paired-end mapping data with GRIAL F1000research. 3. DOI: 10.7490/F1000Research.1090292.1  1
2012 Xin H, Lee D, Hormozdiari F, Alkan C, Mutlu O. FastHASH: a new algorithm for fast and comprehensive next-generation sequence mapping F1000research. 3. DOI: 10.7490/F1000Research.1089776.1  1
2012 Alay S, Alkan C, Göde F. Steady-state thermal comfort properties of fabrics incorporated with microencapsulated phase change materials Journal of the Textile Institute. 103: 757-765. DOI: 10.1080/00405000.2011.606982  1
2012 Sari A, Alkan C, Lafçi O. Synthesis and thermal properties of poly(styrene-co-ally alcohol)-graft-stearic acid copolymers as novel solid-solid PCMs for thermal energy storage Solar Energy. 86: 2282-2292. DOI: 10.1016/j.solener.2012.04.018  1
2012 Alkan C, Günther E, Hiebler S, Ensari OF, Kahraman D. Polyurethanes as solid-solid phase change materials for thermal energy storage Solar Energy. 86: 1761-1769. DOI: 10.1016/j.solener.2012.03.012  1
2012 Sari A, Alkan C, Biçer A. Synthesis and thermal properties of polystyrene-graft-PEG copolymers as new kinds of solid-solid phase change materials for thermal energy storage Materials Chemistry and Physics. 133: 87-94. DOI: 10.1016/j.matchemphys.2011.12.056  1
2012 Alkan C, Günther E, Hiebler S, Himpel M. Complexing blends of polyacrylic acid-polyethylene glycol and poly(ethylene-co-acrylic acid)-polyethylene glycol as shape stabilized phase change materials Energy Conversion and Management. 64: 364-370. DOI: 10.1016/j.enconman.2012.06.003  1
2012 Başman N, Uzun O, Fiat S, Alkan C, Çankaya G. Electrical characterization of a pre-ceramic polymer modified Ag/poly(hydridocarbyne)/p-Si Schottky barrier diode Journal of Materials Science: Materials in Electronics. 23: 2282-2288. DOI: 10.1007/s10854-012-0819-1  1
2012 Alkan C, Günther E, Hiebler S, Ensari OF, Kahraman D. Polyethylene glycol-sugar composites as shape stabilized phase change materials for thermal energy storage Polymer Composites. 33: 1728-1736. DOI: 10.1002/pc.22307  1
2012 Sari A, Alkan C. Preparation and thermal energy storage properties of poly(n-butyl methacrylate)/fatty acids composites as form-stable phase change materials Polymer Composites. 33: 92-98. DOI: 10.1002/pc.21252  1
2012 Alkan C, Ensari OF, Kahraman D. Poly(2-alkyloyloxyethylacrylate) and poly(2-alkyloyloxyethylacrylate-co- methylacrylate) comblike polymers as novel phase-change materials for thermal energy storage Journal of Applied Polymer Science. 126: 631-640. DOI: 10.1002/app.36646  1
2012 Alkan C, Sari A, Biçer A. Thermal energy storage by poly(styrene-co-p-stearoylstyrene) copolymers produced by the modification of polystyrene Journal of Applied Polymer Science. 125: 3447-3455. DOI: 10.1002/app.36527  1
2011 Renton AE, Majounie E, Waite A, Simón-Sánchez J, Rollinson S, Gibbs JR, Schymick JC, Laaksovirta H, van Swieten JC, Myllykangas L, Kalimo H, Paetau A, Abramzon Y, Remes AM, Kaganovich A, ... ... Alkan C, et al. A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD. Neuron. 72: 257-68. PMID 21944779 DOI: 10.1016/J.Neuron.2011.09.010  1
2011 Lee S, Paulson KG, Murchison EP, Afanasiev OK, Alkan C, Leonard JH, Byrd DR, Hannon GJ, Nghiem P. Identification and validation of a novel mature microRNA encoded by the Merkel cell polyomavirus in human Merkel cell carcinomas. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 52: 272-5. PMID 21907614 DOI: 10.1016/J.Jcv.2011.08.012  1
2011 Ventura M, Catacchio CR, Alkan C, Marques-Bonet T, Sajjadian S, Graves TA, Hormozdiari F, Navarro A, Malig M, Baker C, Lee C, Turner EH, Chen L, Kidd JM, Archidiacono N, et al. Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee. Genome Research. 21: 1640-9. PMID 21685127 DOI: 10.1101/Gr.124461.111  1
2011 Hormozdiari F, Hach F, Sahinalp SC, Eichler EE, Alkan C. Sensitive and fast mapping of di-base encoded reads. Bioinformatics (Oxford, England). 27: 1915-21. PMID 21586516 DOI: 10.1093/Bioinformatics/Btr303  1
2011 Alkan C, Coe BP, Eichler EE. Genome structural variation discovery and genotyping. Nature Reviews. Genetics. 12: 363-76. PMID 21358748 DOI: 10.1038/Nrg2958  1
2011 Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, Fu Y, Grubert F, Hajirasouliha I, et al. Mapping copy number variation by population-scale genome sequencing. Nature. 470: 59-65. PMID 21293372 DOI: 10.1038/Nature09708  1
2011 Nguyen DK, Yang F, Kaul R, Alkan C, Antonellis A, Friery KF, Zhu B, de Jong PJ, Disteche CM. Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X. Genome Research. 21: 402-9. PMID 21282478 DOI: 10.1101/Gr.108563.110  1
2011 Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Alkan C, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687  1
2011 Kitzman JO, Mackenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nature Biotechnology. 29: 59-63. PMID 21170042 DOI: 10.1038/Nbt.1740  1
2011 Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE. Alu repeat discovery and characterization within human genomes. Genome Research. 21: 840-9. PMID 21131385 DOI: 10.1101/Gr.115956.110  1
2011 Alkan C, Sajjadian S, Eichler EE. Limitations of next-generation genome sequence assembly. Nature Methods. 8: 61-5. PMID 21102452 DOI: 10.1038/Nmeth.1527  1
2011 Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M. Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Research. 21: 137-45. PMID 21081712 DOI: 10.1101/Gr.111278.110  1
2011 Alkan C, Tek Y, Kahraman D. Preparation and characterization of a series of thiourea derivatives as phase change materials for thermal energy storage Turkish Journal of Chemistry. 35: 769-777. DOI: 10.3906/kim-1008-3  1
2011 Wu TS, Alkan C, Chen TW. Complexity reduction for analog circuit performance models using random forests Proceedings - 17th Ifip International Conference On Very Large Scale Integration, Vlsi-Soc 2009. 29-34. DOI: 10.1109/VLSISOC.2009.6041326  1
2011 Alay S, Alkan C, Göde F. Synthesis and characterization of poly(methyl methacrylate)/n-hexadecane microcapsules using different cross-linkers and their application to some fabrics Thermochimica Acta. 518: 1-8. DOI: 10.1016/j.tca.2011.01.014  1
2011 Sari A, Alkan C, Biçer A, Karaipekli A. Synthesis and thermal energy storage characteristics of polystyrene-graft-palmitic acid copolymers as solidsolid phase change materials Solar Energy Materials and Solar Cells. 95: 3195-3201. DOI: 10.1016/j.solmat.2011.07.003  1
2011 Alkan C, Canik G, Dünya H, Sari A. Synthesis and thermal energy storage properties of ethylene dilauroyl, dimyristoyl, and dipalmitoyl amides as novel solidliquid phase change materials Solar Energy Materials and Solar Cells. 95: 1203-1207. DOI: 10.1016/j.solmat.2011.01.018  1
2011 Alkan C, Sari A, Karaipekli A. Preparation, thermal properties and thermal reliability of microencapsulated n-eicosane as novel phase change material for thermal energy storage Energy Conversion and Management. 52: 687-692. DOI: 10.1016/j.enconman.2010.07.047  1
2011 Entürk SB, Kahraman D, Alkan C, Göke I. Biodegradable PEG/cellulose, PEG/agarose and PEG/chitosan blends as shape stabilized phase change materials for latent heat energy storage Carbohydrate Polymers. 84: 141-144. DOI: 10.1016/j.carbpol.2010.11.015  1
2011 Uzun O, Başman N, Alkan C, Kölemen U, YIlmaz F. Investigation of mechanical and creep properties of polypyrrole by depth-sensing indentation Polymer Bulletin. 66: 649-660. DOI: 10.1007/s00289-010-0361-3  1
2011 Alay S, Göde F, Alkan C. Synthesis and thermal properties of poly(n-butyl acrylate)/n-hexadecane microcapsules using different cross-linkers and their application to textile fabrics Journal of Applied Polymer Science. 120: 2821-2829. DOI: 10.1002/app.33266  1
2011 Bebek G, Chance M, Koyuturk M, Price ND, De La Vega FM, Bustamante CD, Leal SM, Foster J, Moore J, Bernauer J, Flores S, Huang X, Shin S, Zhou R, Alkan C, et al. Pacific symposium on biocomputing 2011 Pacific Symposium On Biocomputing 2011, Psb 2011. v.  1
2010 Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu Q, et al. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature. 468: 1053-60. PMID 21179161 DOI: 10.1038/Nature09710  1
2010 Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, Sampas N, Bruhn L, Shendure J, Eichler EE. Diversity of human copy number variation and multicopy genes. Science (New York, N.Y.). 330: 641-6. PMID 21030649 DOI: 10.1126/Science.1197005  1
2010 Antonacci F, Kidd JM, Marques-Bonet T, Teague B, Ventura M, Girirajan S, Alkan C, Campbell CD, Vives L, Malig M, Rosenfeld JA, Ballif BC, Shaffer LG, Graves TA, Wilson RK, et al. A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nature Genetics. 42: 745-50. PMID 20729854 DOI: 10.1038/Ng.643  1
2010 Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, Sahinalp SC. mrsFAST: a cache-oblivious algorithm for short-read mapping. Nature Methods. 7: 576-7. PMID 20676076 DOI: 10.1038/Nmeth0810-576  1
2010 Hormozdiari F, Hajirasouliha I, Dao P, Hach F, Yorukoglu D, Alkan C, Eichler EE, Sahinalp SC. Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics (Oxford, England). 26: i350-7. PMID 20529927 DOI: 10.1093/Bioinformatics/Btq216  1
2010 Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, ... Alkan C, et al. A draft sequence of the Neandertal genome. Science (New York, N.Y.). 328: 710-22. PMID 20448178 DOI: 10.1126/Science.1188021  1
2010 Kidd JM, Sampas N, Antonacci F, Graves T, Fulton R, Hayden HS, Alkan C, Malig M, Ventura M, Giannuzzi G, Kallicki J, Anderson P, Tsalenko A, Yamada NA, Tsang P, et al. Characterization of missing human genome sequences and copy-number polymorphic insertions. Nature Methods. 7: 365-71. PMID 20440878 DOI: 10.1038/Nmeth.1451  1
2010 Hajirasouliha I, Hormozdiari F, Alkan C, Kidd JM, Birol I, Eichler EE, Sahinalp SC. Detection and characterization of novel sequence insertions using paired-end next-generation sequencing. Bioinformatics (Oxford, England). 26: 1277-83. PMID 20385726 DOI: 10.1093/Bioinformatics/Btq152  1
2010 Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, et al. Complete Khoisan and Bantu genomes from southern Africa. Nature. 463: 943-7. PMID 20164927 DOI: 10.1038/Nature08795  1
2010 Thangaraj C, Alkan C, Chen T. Rapid design space exploration using legacy design data and technology scaling trend Integration, the Vlsi Journal. 43: 202-219. DOI: 10.1016/J.Vlsi.2009.11.002  1
2010 Sar A, Bier A, Karaipekli A, Alkan C, Karadag A. Synthesis, thermal energy storage properties and thermal reliability of some fatty acid esters with glycerol as novel solidliquid phase change materials Solar Energy Materials and Solar Cells. 94: 1711-1715. DOI: 10.1016/j.solmat.2010.05.033  1
2010 Canik G, Alkan C. Hexamethylene dilauroyl, dimyristoyl, and dipalmytoyl amides as phase change materials for thermal energy storage Solar Energy. 84: 666-672. DOI: 10.1016/j.solener.2010.01.016  1
2010 Uzun O, Baman N, Alkan C, Kölemen U, Yilmaz F. Depth sensing indentation analysis of electrochemically synthesized polythiophene Materials Chemistry and Physics. 124: 196-202. DOI: 10.1016/j.matchemphys.2010.06.019  1
2010 Sari A, Alkan C, Karaipekli A. Preparation, characterization and thermal properties of PMMA/n-heptadecane microcapsules as novel solid-liquid microPCM for thermal energy storage Applied Energy. 87: 1529-1534. DOI: 10.1016/j.apenergy.2009.10.011  1
2010 Alay S, Göde F, Alkan C. Preparation and characterization of poly(methylmethacrylate-coglycidyl methacrylate)/n-hexadecane nanocapsules as a fiber additive for thermal energy storage Fibers and Polymers. 11: 1089-1093. DOI: 10.1007/s12221-010-1089-2  1
2010 Sari A, Alkan C, Karaipekli A, Uzun O. Poly(ethylene glycol)/poly(methyl methacrylate) blends as novel form-stable phase-change materials for thermal energy storage Journal of Applied Polymer Science. 116: 929-933. DOI: 10.1002/app.31623  1
2010 Alkan C, Brudno M, Eichler EE, Kann MG, Sahinalp SC. Personal genomics Pacific Symposium On Biocomputing 2010, Psb 2010. 302-304.  1
2010 Serbetci Z, Alkan C. Spectroscopic studies of 1,10-phenanthroline-5,6-[4,4'-(ethane-1,2- diilbis(oxy))dibenzenamine] and its transition metal complexes Asian Journal of Chemistry. 22: 1087-1090.  1
2010 Alay S, Alkan C, Göde F. Synthesis and Characterization of Poly(butyl acrylate)/n-hexadecane microcapsules and their Thermal performances in Fabrics Fiber Society Spring 2010 International Conference 1
2010 Alay S, Alkan C, Göde F. Production of PAN and PVA nanofibers incorporated PMMA/n-hexadecane nanocapsules for thermal comfort in textiles Fiber Society Spring 2010 International Conference 1
2009 Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O, Sahinalp SC, Gibbs RA, Eichler EE. Personalized copy number and segmental duplication maps using next-generation sequencing. Nature Genetics. 41: 1061-7. PMID 19718026 DOI: 10.1038/Ng.437  1
2009 McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu Y, Tsung EF, Clouser CR, Duncan C, Ichikawa JK, Lee CC, Zhang Z, Ranade SS, Dimalanta ET, Hyland FC, Sokolsky TD, ... ... Alkan C, et al. Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Research. 19: 1527-41. PMID 19546169 DOI: 10.1101/Gr.091868.109  1
2009 Lee S, Hormozdiari F, Alkan C, Brudno M. MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions. Nature Methods. 6: 473-4. PMID 19483690 DOI: 10.1038/Nmeth.F.256  1
2009 Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC. Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome Research. 19: 1270-8. PMID 19447966 DOI: 10.1101/Gr.088633.108  1
2009 Cellamare A, Catacchio CR, Alkan C, Giannuzzi G, Antonacci F, Cardone MF, Della Valle G, Malig M, Rocchi M, Eichler EE, Ventura M. New insights into centromere organization and evolution from the white-cheeked gibbon and marmoset. Molecular Biology and Evolution. 26: 1889-900. PMID 19429672 DOI: 10.1093/Molbev/Msp101  1
2009 Liu GE, Alkan C, Jiang L, Zhao S, Eichler EE. Comparative analysis of Alu repeats in primate genomes. Genome Research. 19: 876-85. PMID 19411604 DOI: 10.1101/Gr.083972.108  1
2009 Bekpen C, Marques-Bonet T, Alkan C, Antonacci F, Leogrande MB, Ventura M, Kidd JM, Siswara P, Howard JC, Eichler EE. Death and resurrection of the human IRGM gene. Plos Genetics. 5: e1000403. PMID 19266026 DOI: 10.1371/Journal.Pgen.1000403  1
2009 Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Alkan C, Aksay G, Girirajan S, Siswara P, Chen L, et al. A burst of segmental duplications in the genome of the African great ape ancestor. Nature. 457: 877-81. PMID 19212409 DOI: 10.1038/Nature07744  1
2009 Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Nazareth LV, Muzny DM, Alkan C, Aksay G, Girirajan S, et al. A burst of segmental duplications in the genome of the African great ape ancestor Nature. 458: 238. DOI: 10.1038/nature07881  1
2009 Alkan C, Sari A, Karaipekli A, Uzun O. Preparation, characterization, and thermal properties of microencapsulated phase change material for thermal energy storage Solar Energy Materials and Solar Cells. 93: 143-147. DOI: 10.1016/j.solmat.2008.09.009  1
2009 Sari A, Alkan C, Karaipekli A, Uzun O. Microencapsulated n-octacosane as phase change material for thermal energy storage Solar Energy. 83: 1757-1763. DOI: 10.1016/j.solener.2009.05.008  1
2009 Sari A, Karaipekli A, Alkan C. Preparation, characterization and thermal properties of lauric acid/expanded perlite as novel form-stable composite phase change material Chemical Engineering Journal. 155: 899-904. DOI: 10.1016/j.cej.2009.09.005  1
2009 Alkan C, Kaya K, SarI A. Preparation, thermal properties and thermal reliability of form-stable paraffin/polypropylene composite for thermal energy storage Journal of Polymers and the Environment. 17: 254-258. DOI: 10.1007/S10924-009-0146-7  1
2009 Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC. Combinatorial algorithms for structural variation detection in high throughput sequenced genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5541: 218-219. DOI: 10.1007/978-3-642-02008-7_16  1
2008 Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T, Hansen N, Teague B, Alkan C, Antonacci F, Haugen E, Zerr T, Yamada NA, Tsang P, Newman TL, et al. Mapping and sequencing of structural variation from eight human genomes. Nature. 453: 56-64. PMID 18451855 DOI: 10.1038/Nature06862  1
2008 Wu TS, Alkan C, Chen TW. Improving ser immunity of combinational logic using combinations of spatial and temporal checking Proceedings - 11th Euromicro Conference On Digital System Design Architectures, Methods and Tools, Dsd 2008. 535-541. DOI: 10.1109/DSD.2008.82  1
2008 Kaygusuz K, Alkan C, Sari A, Uzun O. Encapsulated fatty acids in an acrylic resin as shape-stabilized phase change materials for latent heat thermal energy storage Energy Sources, Part a: Recovery, Utilization and Environmental Effects. 30: 1050-1059. DOI: 10.1080/15567030701258212  1
2008 Alkan C, Sari A. Fatty acid/poly(methyl methacrylate) (PMMA) blends as form-stable phase change materials for latent heat thermal energy storage Solar Energy. 82: 118-124. DOI: 10.1016/j.solener.2007.07.001  1
2008 Alkan C, Kaya K, Sari A. Preparation and thermal properties of ethylene glycole distearate as a novel phase change material for energy storage Materials Letters. 62: 1122-1125. DOI: 10.1016/J.Matlet.2007.07.061  1
2008 Sari A, Alkan C, Karaipekli A, Önal A. Preparation, characterization and thermal properties of styrene maleic anhydride copolymer (SMA)/fatty acid composites as form stable phase change materials Energy Conversion and Management. 49: 373-380. DOI: 10.1016/j.enconman.2007.06.006  1
2007 Alkan C, Ventura M, Archidiacono N, Rocchi M, Sahinalp SC, Eichler EE. Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data. Plos Computational Biology. 3: 1807-18. PMID 17907796 DOI: 10.1371/Journal.Pcbi.0030181  1
2007 Sharp AJ, Itsara A, Cheng Z, Alkan C, Schwartz S, Eichler EE. Optimal design of oligonucleotide microarrays for measurement of DNA copy-number. Human Molecular Genetics. 16: 2770-9. PMID 17725982 DOI: 10.1093/Hmg/Ddm234  1
2007 Aksay C, Salari R, Karakoc E, Alkan C, Sahinalp SC. taveRNA: a web suite for RNA algorithms and applications. Nucleic Acids Research. 35: W325-9. PMID 17488837 DOI: 10.1093/Nar/Gkm303  1
2007 Alkan C, Aras L, Gündüz G. Synthesis, characterization, and electrical properties of diazophenylene bridged Co, Ni, Cu, Ce, and Er phthalocyanine polymers Journal of Applied Polymer Science. 106: 378-385. DOI: 10.1002/app.26461  1
2006 Alkan C, Karakoç E, Nadeau JH, Sahinalp SC, Zhang K. RNA-RNA interaction prediction and antisense RNA target search. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 267-82. PMID 16597239 DOI: 10.1089/Cmb.2006.13.267  1
2006 Alkan C, Chen T. A progressive two-stage global routing for macro-cell based designs Proceedings of the Ieee International Conference On Vlsi Design. 2006: 777-780. DOI: 10.1109/VLSID.2006.22  1
2006 Alkan C, Chen T. Routing-tree construction with concurrent performance, power and congestion optimization Proceedings - Ieee Computer Society Annual Symposium On Emerging Vlsi Technologies and Architectures 2006. 2006: 365-372. DOI: 10.1109/ISVLSI.2006.80  1
2006 Alkan C. Enthalpy of melting and solidification of sulfonated paraffins as phase change materials for thermal energy storage Thermochimica Acta. 451: 126-130. DOI: 10.1016/j.tca.2006.09.010  1
2006 Alkan C, Karakoc E, Cenk Sahinalp S, Unrau P, Alexander Ebhardt H, Zhang K, Buhler J. RNA secondary structure prediction via energy density minimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 130-142. DOI: 10.1007/11732990_12  1
2006 Alkan C, Aras L, Gündüz G. Synthesis, characterization, and electrical properties of a diazodiphenylene-bridged Cu-phthalocyanine polymer Journal of Polymer Science, Part a: Polymer Chemistry. 44: 5692-5698. DOI: 10.1002/pola.21554  1
2006 Sari A, Alkan C, Kolemen U, Uzun O. Eudragit S (methyl methacrylate methacrylic acid copolymer)/fatty acid blends as form-stable phase change material for latent heat thermal energy storage Journal of Applied Polymer Science. 101: 1402-1406. DOI: 10.1002/app.23478  1
2006 Alkan C, Dumanli AG, Aras L. Sulfonation degree determination of polystyrene ionomers by using adiabatic bomb calorimeter Journal of Applied Polymer Science. 100: 4684-4688. DOI: 10.1002/app.22970  1
2006 Alkan C, Sari A, Uzun O. Poly(ethylene glycol)/acrylic polymer blends for latent heat thermal energy storage Aiche Journal. 52: 3310-3314. DOI: 10.1002/aic.10928  1
2005 Alkan C, Tüzün E, Buard J, Lethiec F, Eichler EE, Bailey JA, Sahinalp SC. Manipulating multiple sequence alignments via MaM and WebMaM. Nucleic Acids Research. 33: W295-8. PMID 15980474 DOI: 10.1093/Nar/Gki406  1
2005 Alkan C, Yurtseven N, Aras L. Acid polymer with magnesium, zinc, and manganese sulfonated polystyrene ionomers Turkish Journal of Chemistry. 29: 497-506.  1
2004 Alkan C, Eichler EE, Bailey JA, Sahinalp SC, Tüzün E. The role of unequal crossover in alpha-satellite DNA evolution: a computational analysis. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 933-44. PMID 15700410 DOI: 10.1089/Cmb.2004.11.933  1
2004 She X, Horvath JE, Jiang Z, Liu G, Furey TS, Christ L, Clark R, Graves T, Gulden CL, Alkan C, Bailey JA, Sahinalp C, Rocchi M, Haussler D, Wilson RK, et al. The structure and evolution of centromeric transition regions within the human genome. Nature. 430: 857-64. PMID 15318213 DOI: 10.1038/Nature02806  1
2004 Alkan C, Aras L, Gündüz G. Synthesis and characterization of 1,4-diazophenylene-bridged Cu-phthalocyanine polymer E-Polymers 1
2003 Liu G, Zhao S, Bailey JA, Sahinalp SC, Alkan C, Tuzun E, Green ED, Eichler EE. Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome. Genome Research. 13: 358-68. PMID 12618366 DOI: 10.1101/Gr.923303  1
2003 Yakuphanoglu F, Aydogdu Y, Gömleksiz M, Sekerci M, Agan S, Alkan C. The electronic transport properties of the [Co2(L)L′(dioxane)2(NO3)2](NO 3)2 complex Materials Letters. 57: 2219-2224. DOI: 10.1016/S0167-577X(02)01178-3  1
2003 Mih M, Aras L, Alkan C. Compatibilization of Poly(2,6-dimethyl-1,4-phenylene oxide) and Poly(2,6-dichloro-1,4-phenylene oxide) with sulfonated polystyrene and its Na and Zn-neutralized ionomers Polymer Bulletin. 50: 191-196. DOI: 10.1007/s00289-003-0150-3  1
2002 Alkan C, Bailey JA, Eichler EE, Sahinalp SC, Tuzun E. An algorithmic analysis of the role of unequal crossover in alpha-satellite DNA evolution. Genome Informatics. International Conference On Genome Informatics. 13: 93-102. PMID 14571378 DOI: 10.11234/Gi1990.13.93  1
2002 Aydogdu Y, Yakuphanoglu F, Aydogdu A, Sekerci M, Alkan C, Aksoy I. XRD, SEM studies and electrical properties of metal complexes, including sodium oxalate ligand (Na2C2O4) Materials Letters. 54: 352-358. DOI: 10.1016/S0167-577X(01)00593-6  1
2001 Eichler EE, Johnson ME, Alkan C, Tuzun E, Sahinalp C, Misceo D, Archidiacono N, Rocchi M. Divergent origins and concerted expansion of two segmental duplications on chromosome 16. The Journal of Heredity. 92: 462-8. PMID 11948212 DOI: 10.1093/Jhered/92.6.462  1
2001 Alkan C, Aras L. Miscibility of polystyrene-based ionomers with poly(2,6-dibromo-1,4-phenylene oxide) Journal of Applied Polymer Science. 82: 3558-3567. DOI: 10.1002/app.2218  1
2001 Saydam S, Alkan C. Synthesis and characterization of a new thiazole schiff base 5-bromo-2-hydroxybenzylidene-2-aminobenzothiazole and its complexes with Co(II), Cu(II) and Ni(II) Polish Journal of Chemistry. 75: 29-33.  1
2000 Şekerci M, Alkan C, Çukurovali A. Synthesis and metal complexation of a schiff-base derivative of 2-amino-4-(p-tolyl)thiazole Zhurnal Neorganicheskoj Khimii. 45: 1350-1354.  1
2000 Şekerci M, Alkan C, Çukurovali A. Synthesis and Metal Complexation of a Schiff Base Derivative of 2-Amino-4-(p-Tolyl)Thiazole Russian Journal of Inorganic Chemistry. 45: 1229-1233.  1
1999 Şekerci M, Alkan C. The synthesis and Co(II), Ni(II), Cu(II) and UO2(VI) complexes of 1,2-O-Benzal-4-aza-7-aminoheptane Synthesis and Reactivity in Inorganic and Metal-Organic Chemistry. 29: 1685-1697.  1
1995 Alkan C, Arslan M, Cici M, Kaya M, Aksoy M. A study on the production of a new material from fly ash and polyethylene Resources, Conservation and Recycling. 13: 147-154. DOI: 10.1016/0921-3449(94)00014-V  1
1995 Alkan C, Şekerci M, Kunç S. Production of hydrogen using fresnel lens-solar electrochemical cell International Journal of Hydrogen Energy. 20: 17-20. DOI: 10.1016/0360-3199(93)E0016-E  1
1994 Arslan M, Alkan C, Cici M, Kaya M. Production of Fe2O3 from FeSO4·xH2O formed in galvanizing works Resources, Conservation and Recycling. 10: 341-347. DOI: 10.1016/0921-3449(94)90022-1  1
1992 Cici M, Alkan C. SO2 determination in the flue gas of Elazig Cement Plant and the modelling of its dispersion | Elazig Cimento Fabrikasi baca gazinda SO2 tayini ve dagiliminin hesaplanmasi Doga, Turkish Journal of Engineering & Environmental Sciences. 16: 297-301.  1
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