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Melissa M Harrison - Related publications

Biomolecular Chemistry University of Wisconsin, Madison, Madison, WI 
Development, differentiation
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kim D, Hong SH, Han G, Cho C. Analysis of mouse male germ cell-specific or -predominant Tex13 family genes encoding proteins with transcriptional repressor activity. Molecular Biology Reports. PMID 33811575 DOI: 10.1007/s11033-021-06265-5   
2021 Goszczynski DE, Halstead MM, Islas-Trejo AD, Zhou H, Ross PJ. Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage. Genome Research. 31: 732-744. PMID 33722934 DOI: 10.1101/gr.267336.120   
2021 Ing-Simmons E, Vaid R, Bing XY, Levine M, Mannervik M, Vaquerizas JM. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nature Genetics. 53: 487-499. PMID 33795866 DOI: 10.1038/s41588-021-00799-x   
2021 Tresenrider A, Morse K, Jorgensen V, Chia M, Liao H, Jacobus van Werven F, Ünal E. Integrated genomic analysis reveals key features of long undecoded transcript isoform-based gene repression. Molecular Cell. PMID 33826921 DOI: 10.1016/j.molcel.2021.03.013   
2021 Larson ED, Marsh AJ, Harrison MM. Pioneering the developmental frontier. Molecular Cell. PMID 33689750 DOI: 10.1016/j.molcel.2021.02.020   
2021 Mark KG, Rape M. Ubiquitin-dependent regulation of transcription in development and disease. Embo Reports. e51078. PMID 33779035 DOI: 10.15252/embr.202051078   
2021 Wang P, Yan Z, Zong X, Yan Q, Zhang J. Genome-Wide Analysis and Expression Profiles of the Dof Family in under Temperature, Salt and ABA Treatment. Plants (Basel, Switzerland). 10. PMID 33922432 DOI: 10.3390/plants10050850   
2021 Akerman I, Maestro MA, De Franco E, Grau V, Flanagan S, García-Hurtado J, Mittler G, Ravassard P, Piemonti L, Ellard S, Hattersley AT, Ferrer J. Neonatal diabetes mutations disrupt a chromatin pioneering function that activates the human insulin gene. Cell Reports. 35: 108981. PMID 33852861 DOI: 10.1016/j.celrep.2021.108981   
2021 Khan I, Khan S, Zhang Y, Zhou J. Genome-wide analysis and functional characterization of the Dof transcription factor family in rice (Oryza sativa L.). Planta. 253: 101. PMID 33856565 DOI: 10.1007/s00425-021-03627-y   
2021 Lu B, Liu M, Gu L, Li Y, Shen S, Guo G, Wang F, He X, Zhao Y, Shang X, Wang L, Yang G, Zhu Q, Cao J, Jiang C, et al. The Architectural Factor HMGB1 Is Involved in Genome Organization in the Human Malaria Parasite Plasmodium falciparum. Mbio. 12. PMID 33906919 DOI: 10.1128/mBio.00148-21   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Górska AM, Gouveia P, Borba AR, Zimmermann A, Serra TS, Carvalho P, Lourenço TF, Oliveira MM, Peterhänsel C, Saibo NJM. ZmOrphan94 Transcription Factor Downregulates Gene Expression in Maize Bundle Sheath Cells. Frontiers in Plant Science. 12: 559967. PMID 33897718 DOI: 10.3389/fpls.2021.559967   
2021 Kwik M, Hainzl S, Oppelt J, Tichy B, Koller U, Bernardinelli E, Steiner M, Zara G, Nofziger C, Weis S, Paulmichl M, Dossena S, Patsch W, Soyal SM. Selective Activation of CNS and Reference Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases. International Journal of Molecular Sciences. 22. PMID 33804860 DOI: 10.3390/ijms22073296   
2021 Meng F, Zhao H, Zhu B, Zhang T, Yang M, Li Y, Han Y, Jiang J. Genomic Editing of Intronic Enhancers Unveils Their Role in Fine-Tuning Tissue-Specific Gene Expression in Arabidopsis thaliana. The Plant Cell. PMID 33764459 DOI: 10.1093/plcell/koab093   
2021 Hwang S, Lee N, Choe D, Lee Y, Kim W, Jeong Y, Cho S, Palsson BO, Cho BK. Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome. Msystems. 6. PMID 33947798 DOI: 10.1128/mSystems.01013-20   
2021 Patel N, Bush WS. Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources. Bmc Bioinformatics. 22: 200. PMID 33874910 DOI: 10.1186/s12859-021-04126-3   
2021 Milne L, Bayer M, Rapazote-Flores P, Mayer CD, Waugh R, Simpson CG. EORNA, a barley gene and transcript abundance database. Scientific Data. 8: 90. PMID 33767193 DOI: 10.1038/s41597-021-00872-4   
2021 Garcia-Lozano M, Natarajan P, Levi A, Katam R, Lopez-Ortiz C, Nimmakayala P, Reddy UK. Altered chromatin conformation and transcriptional regulation in watermelon following genome doubling. The Plant Journal : For Cell and Molecular Biology. PMID 33788333 DOI: 10.1111/tpj.15256   
2021 Panigrahi A, O'Malley BW. Mechanisms of enhancer action: the known and the unknown. Genome Biology. 22: 108. PMID 33858480 DOI: 10.1186/s13059-021-02322-1   
2021 Gordon MR, Zhu J, Qu V, Li R. A case of convergent-gene interference in the budding yeast knockout library causing chromosome instability. G3 (Bethesda, Md.). PMID 33724427 DOI: 10.1093/g3journal/jkab084   
2021 Zhang L, Zhao J, Bi H, Yang X, Zhang Z, Su Y, Li Z, Zhang L, Sanderson BJ, Liu J, Ma T. Bioinformatic analysis of chromatin organization and biased expression of duplicated genes between two poplars with a common whole-genome duplication. Horticulture Research. 8: 62. PMID 33750794 DOI: 10.1038/s41438-021-00494-2   
2021 Ahmady E, Blais A, Burgon PG. Muscle Enriched Lamin Interacting Protein () Binds Chromatin and Is Required for Myoblast Differentiation. Cells. 10. PMID 33802236 DOI: 10.3390/cells10030615   
2021 Nuñez JK, Chen J, Pommier GC, Cogan JZ, Replogle JM, Adriaens C, Ramadoss GN, Shi Q, Hung KL, Samelson AJ, Pogson AN, Kim JYS, Chung A, Leonetti MD, Chang HY, et al. Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing. Cell. PMID 33838111 DOI: 10.1016/j.cell.2021.03.025   
2021 Zhao W, Liu Y, Li L, Meng H, Yang Y, Dong Z, Wang L, Wu G. Genome-Wide Identification and Characterization of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in Red Walnut ( L.). Frontiers in Genetics. 12: 632509. PMID 33719341 DOI: 10.3389/fgene.2021.632509   
2021 Zhu I, Song W, Ovcharenko I, Landsman D. A model of active transcription hubs that unifies the roles of active promoters and enhancers. Nucleic Acids Research. PMID 33872375 DOI: 10.1093/nar/gkab235   
2021 Wang L, Jia G, Jiang X, Cao S, Chen ZJ, Song Q. Altered chromatin architecture and gene expression during polyploidization and domestication of soybean. The Plant Cell. PMID 33730165 DOI: 10.1093/plcell/koab081   
2021 Fan K, Moore JE, Zhang XO, Weng Z. Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes. Nucleic Acids Research. PMID 33978759 DOI: 10.1093/nar/gkab345   
2021 Singh D, Yi SV. Enhancer pleiotropy, gene expression, and the architecture of human enhancer-gene interactions. Molecular Biology and Evolution. PMID 33749795 DOI: 10.1093/molbev/msab085   
2021 Lohani N, Babaei S, Singh MB, Bhalla PL. Genome-Wide Identification and Comparative Analysis of Gene Family in . Plants (Basel, Switzerland). 10. PMID 33916912 DOI: 10.3390/plants10040709   
2021 Spiegel J, Cuesta SM, Adhikari S, Hänsel-Hertsch R, Tannahill D, Balasubramanian S. G-quadruplexes are transcription factor binding hubs in human chromatin. Genome Biology. 22: 117. PMID 33892767 DOI: 10.1186/s13059-021-02324-z   
2021 Freewoman JM, Snape R, Cui F. Temporal gene regulation by p53 is associated with the rotational setting of its binding sites in nucleosomes. Cell Cycle (Georgetown, Tex.). 1-16. PMID 33764853 DOI: 10.1080/15384101.2021.1904554   
2021 Menggang L, Aijia L, Qingwei L, Peng S. Progress on the origin, function and evolutionary mechanism of RHR transcription factor family. Yi Chuan = Hereditas. 43: 215-225. PMID 33724206 DOI: 10.16288/j.yczz.20-332   
2021 Arabzade A, Zhao Y, Varadharajan S, Chen HC, Jessa S, Rivas B, Stuckert AJ, Solis M, Kardian A, Tlais D, Golbourn BJ, Stanton AJ, Chan YS, Olson C, Karlin KL, et al. ZFTA-RELA Dictates Oncogenic Transcriptional Programs to Drive Aggressive Supratentorial Ependymoma. Cancer Discovery. PMID 33741710 DOI: 10.1158/2159-8290.CD-20-1066   
2021 Trinh BQ, Ummarino S, Zhang Y, Ebralidze AK, Bassal MA, Nguyen TM, Heller G, Coffey R, Tenen DE, van der Kouwe E, Fabiani E, Gurnari C, Wu CS, Espinosa Angarcia VE, Yang H, et al. Myeloid lncRNA LOUP Mediates Opposing Regulatory Effects of RUNX1 and RUNX1-ETO in t(8;21) AML. Blood. PMID 33971010 DOI: 10.1182/blood.2020007920   
2021 Huang MK, Zhang L, Zhou LM, Yung WS, Li MW, Lam HM. Genomic Features of Open Chromatin Regions (OCRs) in Wild Soybean and Their Effects on Gene Expressions. Genes. 12. PMID 33923056 DOI: 10.3390/genes12050640   
2021 Chovanec P, Collier AJ, Krueger C, Várnai C, Semprich CI, Schoenfelder S, Corcoran AE, Rugg-Gunn PJ. Widespread reorganisation of pluripotent factor binding and gene regulatory interactions between human pluripotent states. Nature Communications. 12: 2098. PMID 33828098 DOI: 10.1038/s41467-021-22201-4   
2021 Gomes SC, Ferreira MR, Tavares AF, Silva IN, Becker JD, Moreira LM. A histone-like nucleoid structuring protein regulates several virulence traits in . Applied and Environmental Microbiology. PMID 33931418 DOI: 10.1128/AEM.00369-21   
2021 Patel YD, Brown AJ, Zhu J, Rosignoli G, Gibson SJ, Hatton D, James DC. Control of Multigene Expression Stoichiometry in Mammalian Cells Using Synthetic Promoters. Acs Synthetic Biology. PMID 33939428 DOI: 10.1021/acssynbio.0c00643   
2021 Abbas F, Ke Y, Zhou Y, Yu Y, Waseem M, Ashraf U, Wang C, Wang X, Li X, Yue Y, Yu R, Fan Y. Genome-Wide Analysis Reveals the Potential Role of MYB Transcription Factors in Floral Scent Formation in . Frontiers in Plant Science. 12: 623742. PMID 33719296 DOI: 10.3389/fpls.2021.623742   
2021 Nan H, Ludlow RA, Lu M, An H. Genome-Wide Analysis of Genes and Their Response to Abiotic Stress in Rose (). Frontiers in Genetics. 12: 538733. PMID 33747030 DOI: 10.3389/fgene.2021.538733   
2021 Liu H, Yang Y, Zhang L. Zinc Finger-Homeodomain Transcriptional Factors (ZF-HDs) in Wheat ( L.): Identification, Evolution, Expression Analysis and Response to Abiotic Stresses. Plants (Basel, Switzerland). 10. PMID 33809871 DOI: 10.3390/plants10030593   
2021 Åkesson J, Lubovac-Pilav Z, Magnusson R, Gustafsson M. ComHub: Community predictions of hubs in gene regulatory networks. Bmc Bioinformatics. 22: 58. PMID 33563211 DOI: 10.1186/s12859-021-03987-y   
2021 Shen GM, Ou SY, He C, Liu J, He L. Full length sequencing reveals novel transcripts of detoxification genes along with related alternative splicing events and lncRNAs in Phyllotreta striolata. Plos One. 16: e0248749. PMID 33760871 DOI: 10.1371/journal.pone.0248749   
2021 Padam KSR, Chakrabarty S, Kabekkodu SP, Paul B, Hunter KD, Radhakrishnan R. In silico analysis of HOX-associated transcription factors as potential regulators of oral cancer. Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology. 4543. PMID 33741282 DOI: 10.1016/j.oooo.2021.01.002   
2021 Du H, Zaman S, Hu S, Che S. Single-Molecule Long-Read Sequencing of Purslane () and Differential Gene Expression Related with Biosynthesis of Unsaturated Fatty Acids. Plants (Basel, Switzerland). 10. PMID 33808162 DOI: 10.3390/plants10040655   
2021 Reed F, Larsuel ST, Mayday MY, Scanlon V, Krause DS. MRTFA: a critical protein in normal and malignant hematopoiesis and beyond. The Journal of Biological Chemistry. 100543. PMID 33722605 DOI: 10.1016/j.jbc.2021.100543   
2021 Wu B, Jiang X, Huang Y, Ying X, Zhang H, Liu B, Li Z, Qi D, Ji W, Cai X. Integrated Analysis of mRNA-mA-protein Profiles Reveals Novel Insights into the Mechanisms for Cadmium-induced Urothelial Transformation. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-23. PMID 33830842 DOI: 10.1080/1354750X.2021.1913513   
2021 Casas-Tintó S, Ferrús A. The haplolethality paradox of the wupA gene in Drosophila. Plos Genetics. 17: e1009108. PMID 33739971 DOI: 10.1371/journal.pgen.1009108   
2021 Wang H, Chen JG, Chang Y. Identification, Expression, and Interaction Analysis of Ovate Family Proteins in Reveals a Role of PtOFP1 Regulating Drought Stress Response. Frontiers in Plant Science. 12: 650109. PMID 33959141 DOI: 10.3389/fpls.2021.650109