Iman Hajirasouliha, B.S. - Publications

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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Malikic S, Mehrabadi FR, Ciccolella S, Rahman MK, Ricketts C, Haghshenas E, Seidman D, Hach F, Hajirasouliha I, Sahinalp SC. PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data. Genome Research. PMID 31628256 DOI: 10.1101/gr.234435.118  0.76
2019 Ricketts C, Seidman D, Popic V, Hormozdiari F, Batzoglou S, Hajirasouliha I. Meltos: Multi-Sample Tumor Phylogeny Reconstruction for Structural Variants. Bioinformatics (Oxford, England). PMID 31584621 DOI: 10.1093/bioinformatics/btz737  0.76
2015 Popic V, Salari R, Hajirasouliha I, Kashef-Haghighi D, West RB, Batzoglou S. Fast and scalable inference of multi-sample cancer lineages. Genome Biology. 16: 91. PMID 25944252 DOI: 10.1186/s13059-015-0647-8  0.76
2014 Ritz A, Bashir A, Sindi S, Hsu D, Hajirasouliha I, Raphael BJ. Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinformatics (Oxford, England). 30: 3458-66. PMID 25355789 DOI: 10.1093/bioinformatics/btu714  0.76
2014 Hajirasouliha I, Mahmoody A, Raphael BJ. A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data. Bioinformatics (Oxford, England). 30: i78-86. PMID 24932008 DOI: 10.1093/bioinformatics/btu284  0.76
2014 Wu HT, Hajirasouliha I, Raphael BJ. Detecting independent and recurrent copy number aberrations using interval graphs. Bioinformatics (Oxford, England). 30: i195-203. PMID 24931984 DOI: 10.1093/bioinformatics/btu276  0.76
2014 Hajirasouliha I, Raphael BJ. Reconstructing mutational history in multiply sampled tumors using perfect phylogeny mixtures Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8701: 354-367. DOI: 10.1007/978-3-662-44753-6_27  0.76
2013 Marschall T, Hajirasouliha I, Schönhuth A. MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels. Bioinformatics (Oxford, England). 29: 3143-50. PMID 24072733 DOI: 10.1093/bioinformatics/btt556  0.76
2012 Lapuk AV, Wu C, Wyatt AW, McPherson A, McConeghy BJ, Brahmbhatt S, Mo F, Zoubeidi A, Anderson S, Bell RH, Haegert A, Shukin R, Wang Y, Fazli L, Hurtado-Coll A, ... ... Hajirasouliha I, et al. From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer. The Journal of Pathology. 227: 286-97. PMID 22553170 DOI: 10.1002/path.4047  0.76
2012 Hajirasouliha I, Schönhuth A, de Juan D, Valencia A, Sahinalp SC. Mirroring co-evolving trees in the light of their topologies. Bioinformatics (Oxford, England). 28: 1202-8. PMID 22399677 DOI: 10.1093/bioinformatics/bts109  0.76
2012 Wu C, Wyatt AW, Lapuk AV, McPherson A, McConeghy BJ, Bell RH, Anderson S, Haegert A, Brahmbhatt S, Shukin R, Mo F, Li E, Fazli L, Hurtado-Coll A, Jones EC, ... ... Hajirasouliha I, et al. Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer. The Journal of Pathology. 227: 53-61. PMID 22294438 DOI: 10.1002/path.3987  0.76
2012 Dao P, Hormozdiari F, Hajirasouliha I, Ester M, Sahinalp SC. Proteome network emulating models Functional Coherence of Molecular Networks in Bioinformatics. 2147483647: 69-95. DOI: 10.1007/978-1-4614-0320-3_4  0.76
2011 Hormozdiari F, Hajirasouliha I, McPherson A, Eichler EE, Sahinalp SC. Simultaneous structural variation discovery among multiple paired-end sequenced genomes. Genome Research. 21: 2203-12. PMID 22048523 DOI: 10.1101/gr.120501.111  0.76
2011 McPherson A, Wu C, Hajirasouliha I, Hormozdiari F, Hach F, Lapuk A, Volik S, Shah S, Collins C, Sahinalp SC. Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. Bioinformatics (Oxford, England). 27: 1481-8. PMID 21478487 DOI: 10.1093/bioinformatics/btr184  0.76
2011 Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, Fu Y, Grubert F, Hajirasouliha I, et al. Mapping copy number variation by population-scale genome sequencing. Nature. 470: 59-65. PMID 21293372 DOI: 10.1038/nature09708  0.76
2011 Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE. Alu repeat discovery and characterization within human genomes. Genome Research. 21: 840-9. PMID 21131385 DOI: 10.1101/gr.115956.110  0.76
2011 Hormozdiari F, Hajirasouliha I, McPherson A, Eichler EE, Sahinalp SC. Simultaneous structural variation discovery in multiple paired-end sequenced genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6577: 104-105. DOI: 10.1007/978-3-642-20036-6_11  0.76
2010 Hormozdiari F, Hajirasouliha I, Dao P, Hach F, Yorukoglu D, Alkan C, Eichler EE, Sahinalp SC. Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics (Oxford, England). 26: i350-7. PMID 20529927 DOI: 10.1093/bioinformatics/btq216  0.76
2010 Hajirasouliha I, Hormozdiari F, Alkan C, Kidd JM, Birol I, Eichler EE, Sahinalp SC. Detection and characterization of novel sequence insertions using paired-end next-generation sequencing. Bioinformatics (Oxford, England). 26: 1277-83. PMID 20385726 DOI: 10.1093/bioinformatics/btq152  0.76
2010 Berenbrink P, Friedetzky T, Hajirasouliha I, Hu Z. Convergence to Equilibria in Distributed, Selfish Reallocation Processes with Weighted Tasks Algorithmica (New York). 1-20. DOI: 10.1007/s00453-010-9482-1  0.76
2009 Salari R, Aksay C, Karakoc E, Unrau PJ, Hajirasouliha I, Sahinalp SC. smyRNA: a novel Ab initio ncRNA gene finder. Plos One. 4: e5433. PMID 19415115 DOI: 10.1371/journal.pone.0005433  0.76
2009 Dao P, Schönhuth A, Hormozdiari F, Hajirasouliha I, Sahinalp SC, Ester M. Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5724: 37-48. DOI: 10.1007/978-3-642-04241-6_4  0.76
2008 Hajirasouliha I, Hormozdiari F, Sahinalp SC, Birol I. Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. Bioinformatics (Oxford, England). 24: i32-40. PMID 18586730 DOI: 10.1093/bioinformatics/btn173  0.76
2008 Alon N, Dao P, Hajirasouliha I, Hormozdiari F, Sahinalp SC. Biomolecular network motif counting and discovery by color coding. Bioinformatics (Oxford, England). 24: i241-9. PMID 18586721 DOI: 10.1093/bioinformatics/btn163  0.76
2007 Hajirasouliha I, Jowhari H, Kumar R, Sundaram R. On completing latin squares Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4393: 524-535.  0.76
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