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Chad Niederhuth - Publications

Affiliations: 
Plant Biology Michigan State University, East Lansing, MI 
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ritter EJ, Cousins P, Quigley M, Kile A, Kenchanmane Raju SK, Chitwood DH, Niederhuth C. From buds to shoots: insights into grapevine development from the Witch's Broom bud sport. Bmc Plant Biology. 24: 283. PMID 38627633 DOI: 10.1186/s12870-024-04992-y  0.698
2024 Fang C, Jiang N, Teresi SJ, Platts AE, Agarwal G, Niederhuth C, Edger PP, Jiang J. Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry. Nature Communications. 15: 2491. PMID 38509076 DOI: 10.1038/s41467-024-46861-0  0.392
2023 Xu MR, Liao ZY, Brock JR, Du K, Li GY, Chen ZQ, Wang YH, Gao ZN, Agarwal G, Wei KH, Shao F, Pang S, Platts AE, van de Velde J, Lin HM, ... ... Niederhuth CE, et al. Maternal dominance contributes to subgenome differentiation in allopolyploid fishes. Nature Communications. 14: 8357. PMID 38102128 DOI: 10.1038/s41467-023-43740-y  0.314
2023 Kenchanmane Raju SK, Lensink M, Kliebenstein DJ, Niederhuth C, Monroe G. Epigenomic divergence correlates with sequence polymorphism in Arabidopsis paralogs. The New Phytologist. PMID 37614211 DOI: 10.1111/nph.19227  0.77
2023 Kenchanmane Raju SK, Ledford M, Niederhuth CE. DNA methylation signatures of duplicate gene evolution in angiosperms. Plant Physiology. PMID 37061825 DOI: 10.1093/plphys/kiad220  0.806
2022 St Aubin B, Wai CM, Kenchanmane Raju SK, Niederhuth CE, VanBuren R. Regulatory dynamics distinguishing desiccation tolerance strategies within resurrection grasses. Plant Direct. 6: e457. PMID 36523607 DOI: 10.1002/pld3.457  0.746
2021 Arias T, Niederhuth CE, McSteen P, Pires JC. The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Vegetative Morphotype. Frontiers in Plant Science. 12: 637115. PMID 33747016 DOI: 10.3389/fpls.2021.637115  0.431
2021 Bentz AB, Niederhuth CE, Carruth LL, Navara KJ. Prenatal testosterone triggers long-term behavioral changes in male zebra finches: unravelling the neurogenomic mechanisms. Bmc Genomics. 22: 158. PMID 33676394 DOI: 10.1186/s12864-021-07466-9  0.357
2021 Ritter EJ, Niederhuth CE. Intertwined evolution of plant epigenomes and genomes. Current Opinion in Plant Biology. 61: 101990. PMID 33445143 DOI: 10.1016/j.pbi.2020.101990  0.598
2020 Bird KA, Niederhuth C, Ou S, Gehan M, Pires JC, Xiong Z, VanBuren R, Edger PP. Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus. The New Phytologist. PMID 33280122 DOI: 10.1111/nph.17137  0.419
2020 Agarwal G, Kudapa H, Ramalingam A, Choudhary D, Sinha P, Garg V, Singh VK, Patil GB, Pandey MK, Nguyen HT, Guo B, Sunkar R, Niederhuth CE, Varshney RK. Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement. Functional & Integrative Genomics. PMID 33089419 DOI: 10.1007/s10142-020-00756-7  0.523
2019 Kenchanmane Raju SK, Ritter EJ, Niederhuth CE. Establishment, maintenance, and biological roles of non-CG methylation in plants. Essays in Biochemistry. PMID 31652316 DOI: 10.1042/EBC20190032  0.802
2017 Bewick AJ, Niederhuth CE, Ji L, Rohr NA, Griffin PT, Leebens-Mack J, Schmitz RJ. The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants. Genome Biology. 18: 65. PMID 28457232 DOI: 10.1186/S13059-017-1195-1  0.805
2016 Niederhuth CE, Bewick AJ, Ji L, Alabady MS, Kim KD, Li Q, Rohr NA, Rambani A, Burke JM, Udall JA, Egesi C, Schmutz J, Grimwood J, Jackson SA, Springer NM, et al. Widespread natural variation of DNA methylation within angiosperms. Genome Biology. 17: 194. PMID 27671052 DOI: 10.1186/S13059-016-1059-0  0.789
2016 Niederhuth CE, Schmitz RJ. Putting DNA methylation in context: from genomes to gene expression in plants. Biochimica Et Biophysica Acta. PMID 27590871 DOI: 10.1016/J.Bbagrm.2016.08.009  0.758
2016 Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, et al. On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. 113: 9111-6. PMID 27457936 DOI: 10.1073/Pnas.1604666113  0.701
2016 Griffin PT, Niederhuth CE, Schmitz RJ. A Comparative Analysis of 5-Azacytidine and Zebularine induced DNA Demethylation. G3 (Bethesda, Md.). PMID 27402357 DOI: 10.1534/G3.116.030262  0.705
2016 Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, ... ... Niederhuth CE, et al. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics. PMID 26901068 DOI: 10.1038/Ng.3517  0.578
2015 Vlachogiannis G, Niederhuth CE, Tuna S, Stathopoulou A, Viiri K, de Rooij DG, Jenner RG, Schmitz RJ, Ooi SKT. The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis. Cell Reports. 11: 990. PMID 28843284 DOI: 10.1016/j.celrep.2015.04.041  0.564
2015 Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, et al. From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data. Plos One. 10: e0125000. PMID 25902288 DOI: 10.1371/Journal.Pone.0125000  0.533
2015 Vlachogiannis G, Niederhuth CE, Tuna S, Stathopoulou A, Viiri K, de Rooij DG, Jenner RG, Schmitz RJ, Ooi SK. The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis. Cell Reports. PMID 25683717 DOI: 10.1016/J.Celrep.2015.01.021  0.703
2014 Lane AK, Niederhuth CE, Ji L, Schmitz RJ. pENCODE: a plant encyclopedia of DNA elements. Annual Review of Genetics. 48: 49-70. PMID 25149370 DOI: 10.1146/Annurev-Genet-120213-092443  0.578
2014 Niederhuth CE, Schmitz RJ. Covering your bases: inheritance of DNA methylation in plant genomes. Molecular Plant. 7: 472-80. PMID 24270503 DOI: 10.1093/Mp/Sst165  0.701
2013 Niederhuth CE, Cho SK, Seitz K, Walker JC. Letting go is never easy: Abscission and receptor-like protein kinases Journal of Integrative Plant Biology. 55: 1251-1263. PMID 24138310 DOI: 10.1111/Jipb.12116  0.515
2013 Niederhuth CE, Patharkar OR, Walker JC. Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq. Bmc Genomics. 14: 37. PMID 23327667 DOI: 10.1186/1471-2164-14-37  0.527
2012 Valdivia ER, Chevalier D, Sampedro J, Taylor I, Niederhuth CE, Walker JC. DVL genes play a role in the coordination of socket cell recruitment and differentiation. Journal of Experimental Botany. 63: 1405-12. PMID 22112938 DOI: 10.1093/Jxb/Err378  0.52
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