Rupali P. Patwardhan, Ph.D. - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 

12/44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Soza VL, Lindsley D, Waalkes A, Ramage E, Patwardhan RP, Burton JN, Adey A, Kumar A, Qiu R, Shendure J, Hall B. The Rhododendron genome and chromosomal organization provide insight into shared whole genome duplications across the heath family (Ericaceae). Genome Biology and Evolution. PMID 31702783 DOI: 10.1093/Gbe/Evz245  0.76
2015 Rosenberg AB, Patwardhan RP, Shendure J, Seelig G. Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences. Cell. 163: 698-711. PMID 26496609 DOI: 10.1016/J.Cell.2015.09.054  0.561
2014 Birnbaum RY, Patwardhan RP, Kim MJ, Findlay GM, Martin B, Zhao J, Bell RJ, Smith RP, Ku AA, Shendure J, Ahituv N. Systematic dissection of coding exons at single nucleotide resolution supports an additional role in cell-specific transcriptional regulation. Plos Genetics. 10: e1004592. PMID 25340400 DOI: 10.1371/Journal.Pgen.1004592  0.492
2013 Burton JN, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions Nature Biotechnology. 31: 1119-1125. PMID 24185095 DOI: 10.1038/Nbt.2727  0.722
2013 Smith RP, Taher L, Patwardhan RP, Kim MJ, Inoue F, Shendure J, Ovcharenko I, Ahituv N. Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model. Nature Genetics. 45: 1021-8. PMID 23892608 DOI: 10.1038/Ng.2713  0.481
2012 Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J. Massively parallel functional dissection of mammalian enhancers in vivo. Nature Biotechnology. 30: 265-70. PMID 22371081 DOI: 10.1038/Nbt.2136  0.711
2011 Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, ... ... Patwardhan RP, et al. The ecoresponsive genome of Daphnia pulex. Science (New York, N.Y.). 331: 555-61. PMID 21292972 DOI: 10.1126/Science.1197761  0.365
2011 Kitzman JO, Mackenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nature Biotechnology. 29: 59-63. PMID 21170042 DOI: 10.1038/Nbt.1740  0.681
2011 Kitzman JO, MacKenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J. Erratum: Haplotype-resolved genome sequencing of a Gujarati Indian individual Nature Biotechnology. 29: 459-459. DOI: 10.1038/Nbt0511-459C  0.697
2010 Hiatt JB, Patwardhan RP, Turner EH, Lee C, Shendure J. Parallel, tag-directed assembly of locally derived short sequence reads Nature Methods. 7: 119-122. PMID 20081835 DOI: 10.1038/Nmeth.1416  0.759
2009 Patwardhan RP, Lee C, Litvin O, Young DL, Pe'Er D, Shendure J. High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis Nature Biotechnology. 27: 1173-1175. PMID 19915551 DOI: 10.1038/Nbt.1589  0.563
2009 Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR. Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function. Genome Biology. 10: R97. PMID 19758432 DOI: 10.1186/Gb-2009-10-9-R97  0.335
Low-probability matches (unlikely to be authored by this person)
2006 Patwardhan R, Haixu T, Sun K, Dalkilic M. An approximate de bruijn graph approach to multiple local alignment and motif discovery in protein sequences Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4316: 158-169.  0.229
2007 Imtiaz SA, Shah SL, Patwardhan R, Palizban H, Ruppenstein J. Development of online monitoring scheme for prediction and diagnosis of sheet-break in a pulp and paper mill Fault Detection, Supervision and Safety of Technical Processes 2006. 2: 837-842. DOI: 10.3182/20060829-4-Cn-2909.00139  0.089
2014 Zhao J, Zhu Y, Patwardhan R. Some notes on MPC relevant identification Proceedings of the American Control Conference. 3680-3685. DOI: 10.1109/ACC.2014.6858665  0.08
2009 Jiang H, Patwardhan R, Shah SL. Root cause diagnosis of plant-wide oscillations using the concept of adjacency matrix Journal of Process Control. 19: 1347-1354. DOI: 10.1016/J.Jprocont.2009.04.013  0.072
2011 Wilankar C, Sharma D, Checker R, Khan NM, Patwardhan R, Patil A, Sandur SK, Devasagayam TPA. Role of immunoregulatory transcription factors in differential immunomodulatory effects of tocotrienols Free Radical Biology and Medicine. 51: 129-143. PMID 21536125 DOI: 10.1016/j.freeradbiomed.2011.03.038  0.063
2014 Zhao J, Zhu Y, Patwardhan R. Identification of k-step-ahead prediction error model and MPC control Journal of Process Control. 24: 48-56. DOI: 10.1016/j.jprocont.2013.10.011  0.059
2014 Afdhal NH, Dusheiko GM, Giannini EG, Chen PJ, Han KH, Mohsin A, Rodriguez-Torres M, Rugina S, Bakulin I, Lawitz E, Shiffman ML, Tayyab GUN, Poordad F, Kamel YM, Brainsky A, ... ... Patwardhan R, et al. Eltrombopag increases platelet numbers in thrombocytopenic patients with hcv infection and cirrhosis, allowing for effective antiviral therapy Gastroenterology. 146: 442-452.e1. PMID 24126097 DOI: 10.1053/j.gastro.2013.10.012  0.051
2012 Jiang H, Shah SL, Huang B, Wilson B, Patwardhan R, Szeto F. Model analysis and performance analysis of two industrial MPCs Control Engineering Practice. 20: 219-235. DOI: 10.1016/J.Conengprac.2011.09.007  0.046
2007 Imtiaz SA, Shah SL, Patwardhan R, Palizban HA, Ruppenstein J. Detection, diagnosis and root cause analysis of sheet-break in a pulp and paper mill with economic impact analysis Canadian Journal of Chemical Engineering. 85: 512-525. DOI: 10.1002/Cjce.5450850413  0.044
2013 Zhu Y, Patwardhan R, Wagner SB, Zhao J. Toward a low cost and high performance MPC: The role of system identification Computers and Chemical Engineering. 51: 124-135. DOI: 10.1016/j.compchemeng.2012.07.005  0.042
2008 Jiang H, Patwardhan R, Shah S. Root cause diagnosis of plant-wide oscillations using the adjacency matrix Ifac Proceedings Volumes (Ifac-Papersonline). 17. DOI: 10.3182/20080706-5-KR-1001.1970  0.041
2020 Pawar O, Sanas K, Patwardhan RP, Waghmode S, Khaladkar M. Antineoplastic Activity of Alkylaminolapachol Analogues and their Copper Complexes against MDA-MB-231 Human Breast Cancer Cell Lines Asian Journal of Chemistry. 32: 887-895. DOI: 10.14233/ajchem.2020.22496  0.039
2008 Badwe A, Shah S, Patwardhan S, Patwardhan R. Model-plant mismatch detection in MPC applications using partial correlation analysis Ifac Proceedings Volumes (Ifac-Papersonline). 17. DOI: 10.3182/20080706-5-KR-1001.1980  0.037
2005 Celaya P, Marrero V, Patwardhan R. Application of automated step testing and modeling on a FCC unit at the Hovensa St. Croix refinery Npra Plant Automation and Decision Support 2005 Conference Papers. 2005.  0.034
2012 Azarian K, Patwardhan R, Lott C, Ghosh D, Gowaikar R, Attar R. On Spatial Load Balancing in wide-area wireless networks Ieee Wireless Communications and Networking Conference, Wcnc. 2230-2235. DOI: 10.1109/WCNC.2012.6214164  0.032
2013 Chawla SP, Staddon A, Hendifar A, Messam CA, Patwardhan R, Kamel YM. Results of a phase I dose escalation study of eltrombopag in patients with advanced soft tissue sarcoma receiving doxorubicin and ifosfamide Bmc Cancer. 13. PMID 23497336 DOI: 10.1186/1471-2407-13-121  0.029
2006 Karim A, Fowler M, McLaren B, Cardenas R, Patwardhan R, Nanda A. Concomitant choroid plexus papillomas involving the third and fourth ventricles: A case report and review of the literature. Clinical Neurology and Neurosurgery. 108: 586-9. PMID 15963638 DOI: 10.1016/j.clineuro.2005.04.008  0.029
2007 Hanefeld M, Patwardhan R, Jones NP. A one-year study comparing the efficacy and safety of rosiglitazone and glibenclamide in the treatment of type 2 diabetes Nutrition, Metabolism and Cardiovascular Diseases. 17: 13-23. PMID 17174222 DOI: 10.1016/j.numecd.2005.12.003  0.025
2011 Wilankar C, Khan NM, Checker R, Sharma D, Patwardhan R, Gota V, Sandur SK, Devasagayam TPA. γ-tocotrienol induces apoptosis in human t cell lymphoma through activation of both intrinsic and extrinsic pathways Current Pharmaceutical Design. 17: 2176-2189. PMID 21774779 DOI: 10.2174/138161211796957463  0.022
2006 Wagner C, Patwardhan R, Jang B, Mahinfalah M. Electrophotographic direct-write for electronics 2006 Nsti Nanotechnology Conference and Trade Show - Nsti Nanotech 2006 Technical Proceedings. 3: 206-209.  0.022
2009 Dubey A, Sung WS, Shaya M, Patwardhan R, Willis B, Smith D, Nanda A. Complications of posterior cranial fossa surgery-an institutional experience of 500 patients Surgical Neurology. 72: 369-375. PMID 19604553 DOI: 10.1016/j.surneu.2009.04.001  0.02
2007 Hunt K, Patwardhan R. Trigeminal Neuralgia: A Modern-Day Review International Review of Neurobiology. 79: 621-631. PMID 17531861 DOI: 10.1016/S0074-7742(07)79027-X  0.018
2012 Attar R, He L, Lott C, Patwardhan R, Sun J. Enhancements to CDMA2000 1x for M2M communications 2012 Ieee Globecom Workshops, Gc Wkshps 2012. 1675-1680. DOI: 10.1109/GLOCOMW.2012.6477837  0.017
2008 Jiang H, Shah S, Huang B, Wilson B, Patwardhan R. Performance assessment and model validation of two industrial MPC controllers Ifac Proceedings Volumes (Ifac-Papersonline). 17. DOI: 10.3182/20080706-5-KR-1001.1972  0.016
2007 Patwardhan R, Cardenas R, Myers D, Ware P, Nanda A. Left vagus nerve stimulation for depression: first implantation case post-fDA approval and review of the literature. The Journal of the Louisiana State Medical Society : Official Organ of the Louisiana State Medical Society. 159: 38-41. PMID 17396474  0.016
2010 Kellum A, Jagiello-Gruszfeld A, Bondarenko IN, Patwardhan R, Messam C, Kamel YM. A randomized, double-blind, placebo-controlled, dose ranging study to assess the efficacy and safety of eltrombopag in patients receiving carboplatin/paclitaxel for advanced solid tumors Current Medical Research and Opinion. 26: 2339-2346. PMID 20735290 DOI: 10.1185/03007995.2010.510051  0.015
2006 Nathan CAO, Chakradeo V, Malhotra K, D'Agostino H, Patwardhan R. The voice-controlled robotic assist scope holder AESOP for the endoscopic approach to the sella Skull Base. 16: 123-132. DOI: 10.1055/s-2006-939679  0.013
2015 Wang C, Grunenfelder LK, Patwardhan R, Qiu S, Eliasson V. Investigation of shock wave focusing in water in a logarithmic spiral duct, Part 2: Strong coupling Ocean Engineering. 102: 185-196. DOI: 10.1016/j.oceaneng.2015.04.053  0.01
2014 Gonzalez-Martinez J, Vadera S, Mullin J, Enatsu R, Alexopoulos AV, Patwardhan R, Bingaman W, Najm I. Robot-assisted stereotactic laser ablation in medically intractable epilepsy: Operative technique Neurosurgery. 10: 167-172. DOI: 10.1227/NEU.0000000000000286  0.01
2008 Jahagirdar S, Patwardhan R, Dhakephalkar PK. Curing plasmid-mediated vancomycin resistance in Staphylococcus aureus using herbal naphthoquinones Journal of Hospital Infection. 70: 289-291. PMID 18799244 DOI: 10.1016/j.jhin.2006.04.021  0.01
2006 Patel S, Martins N, Yantis R, Shepro D, Levey J, Patwardhan R. Endoscopic management of metastatic synovial sarcoma to the pancreas [6] Pancreas. 33: 205-206. PMID 16868493 DOI: 10.1097/01.mpa.0000227915.55955.12  0.01
2005 Karim A, Fowler M, Jones L, Patwardhan R, Vannemreddy P, Mccarthy K, Nanda A. Cyclooxygenase-2 expression in brain metastases. Anticancer Research. 25: 2969-71. PMID 16080553  0.01
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