Saikat Chowdhury, Ph.D. - Publications

Affiliations: 
2006-2012 Biochemistry and Molecular Biology The Pennsylvania State University-Eberly College of Science 
 2013-2018 Integrative Structural and Computational Biology The Scripps Research Institute, California, USA 
 2018-2021 Biochemistry and Cell Biology Stony Brook University, Stony Brook, NY, United States 
 2021- CSIR-Centre for Cellular and Molecular Biology 
 2021- Academy of Scientific and Innovative Research, Gaziabad  
Area:
Structural Biology
Website:
https://sites.google.com/view/sclab-at-ccmb

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ali BA, Judy RM, Chowdhury S, Jacobsen NK, Castanzo DT, Carr KL, Richardson CD, Lander GC, Martin A, Gardner BM. The N1 domain of the peroxisomal AAA-ATPase Pex6 is required for Pex15 binding and proper assembly with Pex1. The Journal of Biological Chemistry. 105504. PMID 38036174 DOI: 10.1016/j.jbc.2023.105504  0.617
2023 Ali BA, Judy RM, Chowdhury S, Jacobsen NK, Castanzo DT, Carr KL, Richardson CD, Lander GC, Martin A, Gardner BM. The Pex6 N1 domain is required for Pex15 binding and proper assembly with Pex1. Biorxiv : the Preprint Server For Biology. PMID 37745580 DOI: 10.1101/2023.09.15.557798  0.615
2022 Yang S, Tang Y, Liu Y, Brown AJ, Schaks M, Ding B, Kramer DA, Mietkowska M, Ding L, Alekhina O, Billadeau DD, Chowdhury S, Wang J, Rottner K, Chen B. Arf GTPase activates the WAVE regulatory complex through a distinct binding site. Science Advances. 8: eadd1412. PMID 36516255 DOI: 10.1126/sciadv.add1412  0.788
2022 Ding B, Yang S, Schaks M, Liu Y, Brown AJ, Rottner K, Chowdhury S, Chen B. Structures reveal a key mechanism of WAVE regulatory complex activation by Rac1 GTPase. Nature Communications. 13: 5444. PMID 36114192 DOI: 10.1038/s41467-022-33174-3  0.803
2022 Ding B, Narvaez-Ortiz HY, Singh Y, Hocky GM, Chowdhury S, Nolen BJ. Structure of Arp2/3 complex at a branched actin filament junction resolved by single-particle cryo-electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 119: e2202723119. PMID 35622886 DOI: 10.1073/pnas.2202723119  0.804
2021 Anzelon TA, Chowdhury S, Hughes SM, Xiao Y, Lander GC, MacRae IJ. Structural basis for piRNA targeting. Nature. PMID 34471284 DOI: 10.1038/s41586-021-03856-x  0.571
2020 Basanta B, Chowdhury S, Lander GC, Grotjahn DA. A guided approach for subtomogram averaging of challenging macromolecular assemblies. Journal of Structural Biology: X. 4: 100041. PMID 33319208 DOI: 10.1016/j.yjsbx.2020.100041  0.553
2020 Shaaban M, Chowdhury S, Nolen BJ. Cryo-EM reveals the transition of Arp2/3 complex from inactive to nucleation-competent state. Nature Structural & Molecular Biology. PMID 32839613 DOI: 10.1038/S41594-020-0481-X  0.759
2020 Chowdhury S, Shaaban MH, Nolen B. Cryo-EM Reveals Actin Filament Nucleation by Activated Arp2/3 Complex Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1667  0.548
2019 Rollins MF, Chowdhury S, Carter J, Golden SM, Miettinen HM, Santiago-Frangos A, Faith D, Lawrence CM, Lander GC, Wiedenheft B. Structure Reveals a Mechanism of CRISPR-RNA-Guided Nuclease Recruitment and Anti-CRISPR Viral Mimicry. Molecular Cell. PMID 30872121 DOI: 10.1016/J.Molcel.2019.02.001  0.692
2018 Otomo T, Chowdhury S, Lander GC. The rod-shaped ATG2A-WIPI4 complex tethers membranes in vitro. Contact (Thousand Oaks (Ventura County, Calif.)). 1. PMID 30766969 DOI: 10.1177/2515256418819936  0.612
2018 Chowdhury S, Otomo C, Leitner A, Ohashi K, Aebersold R, Lander GC, Otomo T. Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex. Proceedings of the National Academy of Sciences of the United States of America. PMID 30185561 DOI: 10.1073/Pnas.1811874115  0.665
2018 Grotjahn DA, Chowdhury S, Xu Y, McKenney RJ, Schroer TA, Lander GC. Author Correction: Cryo-electron tomography reveals that dynactin recruits a team of dyneins for processive motility. Nature Structural & Molecular Biology. PMID 29476122 DOI: 10.1038/S41594-018-0043-7  0.581
2018 Grotjahn DA, Chowdhury S, Xu Y, McKenney RJ, Schroer TA, Lander GC. Cryo-electron tomography reveals that dynactin recruits a team of dyneins for processive motility. Nature Structural & Molecular Biology. PMID 29416113 DOI: 10.1038/S41594-018-0027-7  0.719
2018 Gardner BM, Castanzo DT, Chowdhury S, Stjepanovic G, Stefely MS, Hurley JH, Lander GC, Martin A. The peroxisomal AAA-ATPase Pex1/Pex6 unfolds substrates by processive threading. Nature Communications. 9: 135. PMID 29321502 DOI: 10.1038/S41467-017-02474-4  0.687
2017 Chen KC, Qu S, Chowdhury S, Noxon IC, Schonhoft JD, Plate L, Powers ET, Kelly JW, Lander GC, Wiseman RL. The endoplasmic reticulum HSP40 co-chaperone ERdj3/DNAJB11 assembles and functions as a tetramer. The Embo Journal. PMID 28655754 DOI: 10.15252/Embj.201695616  0.658
2017 Rollins MF, Chowdhury S, Carter J, Golden SM, Wilkinson RA, Bondy-Denomy J, Lander GC, Wiedenheft B. Cas1 and the Csy complex are opposing regulators of Cas2/3 nuclease activity. Proceedings of the National Academy of Sciences of the United States of America. PMID 28438998 DOI: 10.1073/Pnas.1616395114  0.709
2017 Chowdhury S, Carter J, Rollins MF, Golden SM, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B. Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex. Cell. 169: 47-57.e11. PMID 28340349 DOI: 10.1016/J.Cell.2017.03.012  0.679
2017 Chowdhury S, Rollins MF, Carter J, Jackson R, Nosaka L, Wiedenheft B, Lander GC. Using Cryoem to Understand How Phages Evade Bacterial CRISPR Defense System Biophysical Journal. 112: 334a-335a. DOI: 10.1016/J.Bpj.2016.11.1811  0.674
2017 Grotjahn D, Chowdhury S, Xu Y, Lander G. Three-Dimensional Snapshots of the Microtubule-Bound Dynein-Dynactin Complex Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.1417  0.671
2015 Chowdhury S, Ketcham SA, Schroer TA, Lander GC. Structural organization of the dynein-dynactin complex bound to microtubules. Nature Structural & Molecular Biology. 22: 345-7. PMID 25751425 DOI: 10.1038/Nsmb.2996  0.674
2015 Gardner BM, Chowdhury S, Lander GC, Martin A. The Pex1/Pex6 complex is a heterohexameric AAA+ motor with alternating and highly coordinated subunits. Journal of Molecular Biology. 427: 1375-88. PMID 25659908 DOI: 10.1016/J.Jmb.2015.01.019  0.716
2015 Chowdhury S, Ketcham SA, Schroer TA, Lander GC. Ultrastructure of Dynactin Complex: A Mediator of Cytoplasmic Dynein Biophysical Journal. 108: 22a. DOI: 10.1016/J.Bpj.2014.11.142  0.726
2014 Sysoeva TA, Chowdhury S, Nixon BT. Breaking symmetry in multimeric ATPase motors. Cell Cycle (Georgetown, Tex.). 13: 1509-10. PMID 24755939 DOI: 10.4161/Cc.28957  0.824
2013 Sysoeva TA, Chowdhury S, Guo L, Nixon BT. Nucleotide-induced asymmetry within ATPase activator ring drives σ54-RNAP interaction and ATP hydrolysis. Genes & Development. 27: 2500-11. PMID 24240239 DOI: 10.1101/Gad.229385.113  0.812
2012 Chakraborty A, Wang D, Ebright YW, Korlann Y, Kortkhonjia E, Kim T, Chowdhury S, Wigneshweraraj S, Irschik H, Jansen R, Nixon BT, Knight J, Weiss S, Ebright RH. Opening and closing of the bacterial RNA polymerase clamp. Science (New York, N.Y.). 337: 591-5. PMID 22859489 DOI: 10.1126/Science.1218716  0.716
2011 Nixon BT, Sysoeva TA, Chen B, Chowdhury S, Guo L, De Carlo S, Hanson J, Yang H. AAA+ ATPase Mechanism Biophysical Journal. 100: 38a. DOI: 10.1016/J.Bpj.2010.12.412  0.796
2010 Chen B, Sysoeva TA, Chowdhury S, Guo L, De Carlo S, Hanson JA, Yang H, Nixon BT. Engagement of arginine finger to ATP triggers large conformational changes in NtrC1 AAA+ ATPase for remodeling bacterial RNA polymerase. Structure (London, England : 1993). 18: 1420-30. PMID 21070941 DOI: 10.1016/J.Str.2010.08.018  0.795
2009 Chen B, Sysoeva TA, Chowdhury S, Guo L, Nixon BT. ADPase activity of recombinantly expressed thermotolerant ATPases may be caused by copurification of adenylate kinase of Escherichia coli. The Febs Journal. 276: 807-15. PMID 19143839 DOI: 10.1111/J.1742-4658.2008.06825.X  0.769
2008 Chen B, Sysoeva TA, Chowdhury S, Nixon BT. Regulation and action of the bacterial enhancer-binding protein AAA+ domains. Biochemical Society Transactions. 36: 89-93. PMID 18208392 DOI: 10.1042/Bst0360089  0.791
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