| Year |
Citation |
Score |
| 2021 |
Sokolkova AB, Bulyntsev SV, Chang PL, Carrasquila-Garcia N, Cook DR, von Wettberg E, Vishnyakova MA, Nuzhdin SV, Samsonova MG. A Genomic Analysis of Historic Chickpea Landraces Biophysics. 66: 32-39. DOI: 10.1134/S0006350921010061 |
0.547 |
|
| 2020 |
Moenga SM, Gai Y, Carrasquilla-Garcia N, Perilla-Henao LM, Cook DR. Gene co-expression analysis reveals transcriptome divergence between wild and cultivated chickpea under drought stress. The Plant Journal : For Cell and Molecular Biology. 104: 1195-1214. PMID 32920943 DOI: 10.1111/tpj.14988 |
0.321 |
|
| 2020 |
Sokolkova A, Bulyntsev SV, Chang PL, Carrasquilla-Garcia N, Igolkina AA, Noujdina NV, von Wettberg E, Vishnyakova MA, Cook DR, Nuzhdin SV, Samsonova MG. Genomic Analysis of Vavilov's Historic Chickpea Landraces Reveals Footprints of Environmental and Human Selection. International Journal of Molecular Sciences. 21. PMID 32486400 DOI: 10.3390/Ijms21113952 |
0.701 |
|
| 2020 |
Sokolkova AB, Chang PL, Carrasquila-Garcia N, Noujdina NV, Cook DR, Nuzhdin SV, Samsonova MG. The Signatures of Ecological Adaptation in the Genomes of Chickpea Landraces Biophysics. 65: 237-240. DOI: 10.1134/S0006350920020244 |
0.652 |
|
| 2019 |
Sivasakthi K, Marques E, Kalungwana N, Carrasquilla-Garcia N, Chang PL, Bergmann EM, Bueno E, Cordeiro M, Sani SGAS, Udupa SM, Rather IA, Rouf Mir R, Vadez V, Vandemark GJ, Gaur PM, ... Cook DR, et al. Functional Dissection of the Chickpea () Stay-Green Phenotype Associated with Molecular Variation at an Ortholog of Mendel's I Gene for Cotyledon Color: Implications for Crop Production and Carotenoid Biofortification. International Journal of Molecular Sciences. 20. PMID 31703441 DOI: 10.3390/Ijms20225562 |
0.6 |
|
| 2019 |
Ortega R, Hecht VFG, Freeman JS, Rubio J, Carrasquilla-Garcia N, Mir RR, Penmetsa RV, Cook DR, Millan T, Weller JL. Altered Expression of an Cluster Underlies a Major Locus Controlling Domestication-Related Changes to Chickpea Phenology and Growth Habit. Frontiers in Plant Science. 10: 824. PMID 31333691 DOI: 10.3389/fpls.2019.00824 |
0.355 |
|
| 2019 |
Greenlon A, Chang PL, Damtew ZM, Muleta A, Carrasquilla-Garcia N, Kim D, Nguyen HP, Suryawanshi V, Krieg CP, Yadav SK, Patel JS, Mukherjee A, Udupa S, Benjelloun I, Thami-Alami I, ... ... Cook DR, et al. Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 31285337 DOI: 10.1073/pnas.1900056116 |
0.589 |
|
| 2019 |
Shin MG, Bulyntsev SV, Chang PL, Korbu LB, Carrasquila-Garcia N, Vishnyakova MA, Samsonova MG, Cook DR, Nuzhdin SV. Multi-trait analysis of domestication genes in Cicer arietinum - Cicer reticulatum hybrids with a multidimensional approach: Modeling wide crosses for crop improvement. Plant Science : An International Journal of Experimental Plant Biology. 285: 122-131. PMID 31203876 DOI: 10.1016/J.Plantsci.2019.04.018 |
0.677 |
|
| 2018 |
Sani SGAS, Chang PL, Zubair A, Carrasquilla-Garcia N, Cordeiro M, Penmetsa RV, Munis MFH, Nuzhdin SV, Cook DR, von Wettberg EJ. Genetic Diversity, Population Structure, and Genetic Correlation with Climatic Variation in Chickpea () Landraces from Pakistan. The Plant Genome. 11. PMID 29505627 DOI: 10.3835/Plantgenome2017.08.0067 |
0.692 |
|
| 2018 |
von Wettberg EJB, Chang PL, Başdemir F, Carrasquila-Garcia N, Korbu LB, Moenga SM, Bedada G, Greenlon A, Moriuchi KS, Singh V, Cordeiro MA, Noujdina NV, Dinegde KN, Shah Sani SGA, Getahun T, ... ... Cook DR, et al. Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation. Nature Communications. 9: 649. PMID 29440741 DOI: 10.1038/S41467-018-02867-Z |
0.695 |
|
| 2017 |
Plekhanova E, Vishnyakova MA, Bulyntsev S, Chang PL, Carrasquilla-Garcia N, Negash K, Wettberg EV, Noujdina N, Cook DR, Samsonova MG, Nuzhdin SV. Genomic and phenotypic analysis of Vavilov's historic landraces reveals the impact of environment and genomic islands of agronomic traits. Scientific Reports. 7: 4816. PMID 28684880 DOI: 10.1038/S41598-017-05087-5 |
0.722 |
|
| 2017 |
Kahraman A, Pandey A, Khan MK, Lindsay D, Moenga S, Vance L, Bergmann E, Carrasquilla-Garcia N, Shin M, Chang PL, von Wettberg EJB, Tar'an B, Cook DR, Penmetsa RV. Distinct Subgroups of Cicer echinospermum
Are Associated with Hybrid Sterility and Breakdown in Interspecific Crosses with Cultivated Chickpea Crop Science. 57: 3101-3111. DOI: 10.2135/CROPSCI2017.06.0335 |
0.45 |
|
| 2016 |
Epstein L, Kaur S, Chang PL, Carrasquilla-Garcia N, Lyu G, Cook DR, Subbarao KV, O'Donnell K. Races of the celery pathogen Fusarium oxysporum f. sp. apii are polyphyletic. Phytopathology. PMID 27938244 DOI: 10.1094/Phyto-04-16-0174-R |
0.516 |
|
| 2016 |
Varma Penmetsa R, Carrasquilla-Garcia N, Bergmann EM, Vance L, Castro B, Kassa MT, Sarma BK, Datta S, Farmer AD, Baek JM, Coyne CJ, Varshney RK, von Wettberg EJ, Cook DR. Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. The New Phytologist. PMID 27193699 DOI: 10.1111/nph.14010 |
0.358 |
|
| 2015 |
Kim JH, Lee C, Hyung D, Jo YJ, Park JS, Cook DR, Choi HK. CSGM Designer: a platform for designing cross-species intron-spanning genic markers linked with genome information of legumes. Plant Methods. 11: 30. PMID 25908937 DOI: 10.1186/S13007-015-0074-6 |
0.364 |
|
| 2015 |
Leal-Bertioli SC, Santos SP, Dantas KM, Inglis PW, Nielen S, Araujo AC, Silva JP, Cavalcante U, Guimarães PM, Brasileiro AC, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Moretzsohn MC, Bertioli DJ. Arachis batizocoi: a study of its relationship to cultivated peanut (A. hypogaea) and its potential for introgression of wild genes into the peanut crop using induced allotetraploids. Annals of Botany. 115: 237-49. PMID 25538110 DOI: 10.1093/aob/mcu237 |
0.376 |
|
| 2014 |
Gujaria-Verma N, Vail SL, Carrasquilla-Garcia N, Penmetsa RV, Cook DR, Farmer AD, Vandenberg A, Bett KE. Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea. Frontiers in Plant Science. 5: 676. PMID 25538716 DOI: 10.3389/fpls.2014.00676 |
0.331 |
|
| 2014 |
Friesen ML, von Wettberg EJ, Badri M, Moriuchi KS, Barhoumi F, Chang PL, Cuellar-Ortiz S, Cordeiro MA, Vu WT, Arraouadi S, Djébali N, Zribi K, Badri Y, Porter SS, Aouani ME, ... Cook DR, et al. The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula. Bmc Genomics. 15: 1160. PMID 25534372 DOI: 10.1186/1471-2164-15-1160 |
0.674 |
|
| 2014 |
Warschefsky E, Penmetsa RV, Cook DR, von Wettberg EJ. Back to the wilds: tapping evolutionary adaptations for resilient crops through systematic hybridization with crop wild relatives. American Journal of Botany. 101: 1791-800. PMID 25326621 DOI: 10.3732/Ajb.1400116 |
0.397 |
|
| 2014 |
Hyung D, Lee C, Kim JH, Yoo D, Seo YS, Jeong SC, Lee JH, Chung Y, Jung KH, Cook DR, Choi HK. Cross-family translational genomics of abiotic stress-responsive genes between Arabidopsis and Medicago truncatula. Plos One. 9: e91721. PMID 24675968 DOI: 10.1371/Journal.Pone.0091721 |
0.33 |
|
| 2014 |
Cordeiro MA, Moriuchi KS, Fotinos TD, Miller KE, Nuzhdin SV, von Wettberg EJ, Cook DR. Population differentiation for germination and early seedling root growth traits under saline conditions in the annual legume Medicago truncatula (Fabaceae). American Journal of Botany. 101: 488-98. PMID 24638163 DOI: 10.3732/Ajb.1300285 |
0.576 |
|
| 2013 |
Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, ... ... Cook DR, et al. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology. 31: 240-6. PMID 23354103 DOI: 10.1038/Nbt.2491 |
0.438 |
|
| 2013 |
Castro BM, Moriuchi KS, Friesen ML, Badri M, Nuzhdin SV, Strauss SY, Cook DR, von Wettberg E. Parental environments and interactions with conspecifics alter salinity tolerance of offspring in the annual medicago truncatula Journal of Ecology. 101: 1281-1287. DOI: 10.1111/1365-2745.12125 |
0.531 |
|
| 2012 |
Saxena RK, Penmetsa RV, Upadhyaya HD, Kumar A, Carrasquilla-Garcia N, Schlueter JA, Farmer A, Whaley AM, Sarma BK, May GD, Cook DR, Varshney RK. Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 19: 449-61. PMID 23103470 DOI: 10.1093/dnares/dss025 |
0.318 |
|
| 2012 |
Nagy ED, Guo Y, Tang S, Bowers JE, Okashah RA, Taylor CA, Zhang D, Khanal S, Heesacker AF, Khalilian N, Farmer AD, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Stalker HT, et al. A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. Bmc Genomics. 13: 469. PMID 22967170 DOI: 10.1186/1471-2164-13-469 |
0.405 |
|
| 2012 |
Kassa MT, Penmetsa RV, Carrasquilla-Garcia N, Sarma BK, Datta S, Upadhyaya HD, Varshney RK, von Wettberg EJ, Cook DR. Genetic patterns of domestication in pigeonpea (Cajanus cajan (L.) Millsp.) and wild Cajanus relatives. Plos One. 7: e39563. PMID 22745789 DOI: 10.1371/journal.pone.0039563 |
0.362 |
|
| 2012 |
Hiremath PJ, Kumar A, Penmetsa RV, Farmer A, Schlueter JA, Chamarthi SK, Whaley AM, Carrasquilla-Garcia N, Gaur PM, Upadhyaya HD, Kavi Kishor PB, Shah TM, Cook DR, Varshney RK. Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnology Journal. 10: 716-32. PMID 22703242 DOI: 10.1111/j.1467-7652.2012.00710.x |
0.357 |
|
| 2012 |
Pandey MK, Monyo E, Ozias-Akins P, Liang X, Guimarães P, Nigam SN, Upadhyaya HD, Janila P, Zhang X, Guo B, Cook DR, Bertioli DJ, Michelmore R, Varshney RK. Advances in Arachis genomics for peanut improvement. Biotechnology Advances. 30: 639-51. PMID 22094114 DOI: 10.1016/J.Biotechadv.2011.11.001 |
0.48 |
|
| 2012 |
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, ... ... Cook DR, et al. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology. 30: 83-9. PMID 22057054 DOI: 10.1038/Nbt.2022 |
0.387 |
|
| 2011 |
Thudi M, Bohra A, Nayak SN, Varghese N, Shah TM, Penmetsa RV, Thirunavukkarasu N, Gudipati S, Gaur PM, Kulwal PL, Upadhyaya HD, Kavikishor PB, Winter P, Kahl G, Town CD, ... ... Cook DR, et al. Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.). Plos One. 6: e27275. PMID 22102885 DOI: 10.1371/Journal.Pone.0027275 |
0.31 |
|
| 2011 |
Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625 |
0.353 |
|
| 2011 |
Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, ... ... Cook DR, et al. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal. 9: 922-31. PMID 21615673 DOI: 10.1111/J.1467-7652.2011.00625.X |
0.34 |
|
| 2011 |
Bohra A, Dubey A, Saxena RK, Penmetsa RV, Poornima KN, Kumar N, Farmer AD, Srivani G, Upadhyaya HD, Gothalwal R, Ramesh S, Singh D, Saxena K, Kishor PB, Singh NK, ... ... Cook DR, et al. Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). Bmc Plant Biology. 11: 56. PMID 21447154 DOI: 10.1186/1471-2229-11-56 |
0.374 |
|
| 2011 |
Gujaria N, Kumar A, Dauthal P, Dubey A, Hiremath P, Bhanu Prakash A, Farmer A, Bhide M, Shah T, Gaur PM, Upadhyaya HD, Bhatia S, Cook DR, May GD, Varshney RK. Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 122: 1577-89. PMID 21384113 DOI: 10.1007/s00122-011-1556-1 |
0.356 |
|
| 2010 |
Varshney RK, Penmetsa RV, Dutta S, Kulwal PL, Saxena RK, Datta S, Sharma TR, Rosen B, Carrasquilla-Garcia N, Farmer AD, Dubey A, Saxena KB, Gao J, Fakrudin B, Singh MN, ... ... Cook DR, et al. Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding : New Strategies in Plant Improvement. 26: 393-408. PMID 20976284 DOI: 10.1007/s11032-009-9327-2 |
0.405 |
|
| 2010 |
Friesen ML, Cordeiro MA, Penmetsa RV, Badri M, Huguet T, Aouani ME, Cook DR, Nuzhdin SV. Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation. The Plant Journal : For Cell and Molecular Biology. 63: 623-35. PMID 20545888 DOI: 10.1111/J.1365-313X.2010.04267.X |
0.65 |
|
| 2010 |
Nayak SN, Zhu H, Varghese N, Datta S, Choi HK, Horres R, Jüngling R, Singh J, Kishor PB, Sivaramakrishnan S, Hoisington DA, Kahl G, Winter P, Cook DR, Varshney RK. Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 1415-41. PMID 20098978 DOI: 10.1007/S00122-010-1265-1 |
0.371 |
|
| 2009 |
Varshney RK, Close TJ, Singh NK, Hoisington DA, Cook DR. Orphan legume crops enter the genomics era! Current Opinion in Plant Biology. 12: 202-10. PMID 19157958 DOI: 10.1016/j.pbi.2008.12.004 |
0.39 |
|
| 2006 |
Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Scheix T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, ... ... Cook DR, et al. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proceedings of the National Academy of Sciences of the United States of America. 103: 14959-64. PMID 17003129 DOI: 10.1073/Pnas.0603228103 |
0.328 |
|
| 2006 |
Choi HK, Luckow MA, Doyle J, Cook DR. Development of nuclear gene-derived molecular markers linked to legume genetic maps. Molecular Genetics and Genomics : Mgg. 276: 56-70. PMID 16642337 DOI: 10.1007/S00438-006-0118-8 |
0.428 |
|
| 2006 |
Mun JH, Kim DJ, Choi HK, Gish J, Debellé F, Mudge J, Denny R, Endré G, Saurat O, Dudez AM, Kiss GB, Roe B, Young ND, Cook DR. Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps. Genetics. 172: 2541-55. PMID 16489220 DOI: 10.1534/Genetics.105.054791 |
0.416 |
|
| 2005 |
Cannon SB, Crow JA, Heuer ML, Wang X, Cannon EK, Dwan C, Lamblin AF, Vasdewani J, Mudge J, Cook A, Gish J, Cheung F, Kenton S, Kunau TM, Brown D, ... ... Cook DR, et al. Databases and information integration for the Medicago truncatula genome and transcriptome. Plant Physiology. 138: 38-46. PMID 15888676 DOI: 10.1104/Pp.104.059204 |
0.316 |
|
| 2004 |
Choi HK, Mun JH, Kim DJ, Zhu H, Baek JM, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Young ND, Cook DR. Estimating genome conservation between crop and model legume species. Proceedings of the National Academy of Sciences of the United States of America. 101: 15289-94. PMID 15489274 DOI: 10.1073/Pnas.0402251101 |
0.406 |
|
| 2003 |
Zhu H, Kim DJ, Baek JM, Choi HK, Ellis LC, Küester H, McCombie WR, Peng HM, Cook DR. Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization. Plant Physiology. 131: 1018-26. PMID 12644654 DOI: 10.1104/Pp.102.016436 |
0.406 |
|
| 2002 |
Ané JM, Lévy J, Thoquet P, Kulikova O, de Billy F, Penmetsa V, Kim DJ, Debellé F, Rosenberg C, Cook DR, Bisseling T, Huguet T, Dénarié J. Genetic and cytogenetic mapping of DMI1, DMI2, and DMI3 genes of Medicago truncatula involved in Nod factor transduction, nodulation, and mycorrhization. Molecular Plant-Microbe Interactions : Mpmi. 15: 1108-18. PMID 12423016 DOI: 10.1094/Mpmi.2002.15.11.1108 |
0.309 |
|
| 1991 |
Cook D, Sequeira L. The use of subtractive hybridization to obtain a DNA probe specific for Pseudomonas solanacearum race 3. Molecular & General Genetics : Mgg. 227: 401-10. PMID 1865877 DOI: 10.1007/Bf00273930 |
0.59 |
|
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