Robert Waterston, M.D. - Publications

Affiliations: 
Genome Sciences Washington University, Saint Louis, St. Louis, MO 

153 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Mok C, Belmarez G, Edgley ML, Moerman DG, Waterston RH. PhenoMIP: High-Throughput Phenotyping of Diverse Populations via Molecular Inversion Probes. G3 (Bethesda, Md.). PMID 32868407 DOI: 10.1534/g3.120.401656  0.8
2018 Konrad A, Flibotte S, Taylor J, Waterston RH, Moerman DG, Bergthorsson U, Katju V. Mutational and transcriptional landscape of spontaneous gene duplications and deletions in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29941601 DOI: 10.1073/pnas.1801930115  0.8
2017 Mok CA, Au V, Thompson OA, Edgley ML, Gevirtzman L, Yochem J, Lowry J, Memar N, Wallenfang MR, Rasoloson D, Bowerman B, Schnabel R, Seydoux G, Moerman DG, Waterston RH. MIP-MAP: High Throughput Mapping of Caenorhabditis elegans Temperature-Sensitive Mutants via Molecular Inversion Probes. Genetics. PMID 28827289 DOI: 10.1534/genetics.117.300179  0.8
2017 Konrad A, Thompson O, Waterston RH, Moerman DG, Keightley PD, Bergthorsson U, Katju V. Article: Discoveries. Molecular Biology and Evolution. PMID 28087770 DOI: 10.1093/molbev/msx051  0.8
2015 Thompson OA, Snoek LB, Nijveen H, Sterken MG, Volkers RJ, Brenchley R, Van't Hof A, Bevers RP, Cossins AR, Yanai I, Hajnal A, Schmid T, Perkins JD, Spencer D, Kruglyak L, ... ... Waterston RH, et al. Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856. Genetics. 200: 975-89. PMID 25995208 DOI: 10.1534/genetics.115.175950  1
2014 Spencer WC, McWhirter R, Miller T, Strasbourger P, Thompson O, Hillier LW, Waterston RH, Miller DM. Isolation of specific neurons from C. elegans larvae for gene expression profiling. Plos One. 9: e112102. PMID 25372608 DOI: 10.1371/journal.pone.0112102  1
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... Waterston RH, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/nature13668  1
2014 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, ... ... Waterston RH, et al. Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. 512: 400-5. PMID 25164749 DOI: 10.1038/nature13497  1
2013 Thompson O, Edgley M, Strasbourger P, Flibotte S, Ewing B, Adair R, Au V, Chaudhry I, Fernando L, Hutter H, Kieffer A, Lau J, Lee N, Miller A, Raymant G, ... ... Waterston RH, et al. The million mutation project: a new approach to genetics in Caenorhabditis elegans. Genome Research. 23: 1749-62. PMID 23800452 DOI: 10.1101/gr.157651.113  1
2013 Mace DL, Weisdepp P, Gevirtzman L, Boyle T, Waterston RH. A high-fidelity cell lineage tracing method for obtaining systematic spatiotemporal gene expression patterns in caenorhabditis elegans G3: Genes, Genomes, Genetics. 3: 851-863. DOI: 10.1534/g3.113.005918  1
2012 Sharanya D, Thillainathan B, Marri S, Bojanala N, Taylor J, Flibotte S, Moerman DG, Waterston RH, Gupta BP. Genetic control of vulval development in Caenorhabditis briggsae. G3 (Bethesda, Md.). 2: 1625-1641. PMID 23275885 DOI: 10.1534/g3.112.004598  1
2012 Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, Angermann K, Hasse S, Rupprecht M, Vinis E, Tinney M, Preston E, Zinke A, Enst S, Teichgraber T, Janette J, ... ... Waterston RH, et al. A genome-scale resource for in vivo tag-based protein function exploration in C. elegans. Cell. 150: 855-66. PMID 22901814 DOI: 10.1016/j.cell.2012.08.001  1
2012 Murray JI, Boyle TJ, Preston E, Vafeados D, Mericle B, Weisdepp P, Zhao Z, Bao Z, Boeck M, Waterston RH. Multidimensional regulation of gene expression in the C. elegans embryo. Genome Research. 22: 1282-94. PMID 22508763 DOI: 10.1101/gr.131920.111  1
2011 Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM. Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nature Genetics. 43: 1179-85. PMID 22019781 DOI: 10.1038/ng.948  1
2011 Boeck ME, Boyle T, Bao Z, Murray J, Mericle B, Waterston R. Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development Developmental Biology. 358: 345-355. PMID 21854766 DOI: 10.1016/j.ydbio.2011.08.002  1
2011 Engelmann I, Griffon A, Tichit L, Montañana-Sanchis F, Wang G, Reinke V, Waterston RH, Hillier LW, Ewbank JJ. A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans Plos One. 6. PMID 21602919 DOI: 10.1371/journal.pone.0019055  1
2011 Tian C, Shi H, Colledge C, Stern M, Waterston R, Liu J. The C. elegans SoxC protein SEM-2 opposes differentiation factors to promote a proliferative blast cell fate in the postembryonic mesoderm. Development (Cambridge, England). 138: 1033-43. PMID 21307099 DOI: 10.1242/dev.062240  1
2011 Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, et al. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Research. 21: 276-85. PMID 21177971 DOI: 10.1101/gr.110189.110  1
2011 Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, et al. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Research. 21: 245-54. PMID 21177963 DOI: 10.1101/gr.114587.110  1
2011 Allen MA, Hillier LW, Waterston RH, Blumenthal T. A global analysis of C. elegans trans-splicing Genome Research. 21: 255-264. PMID 21177958 DOI: 10.1101/gr.113811.110  1
2011 Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, et al. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data (Genome Research (2011) 21, (276-285)) Genome Research. 21: 811.  1
2010 Zhao Z, Boyle TJ, Liu Z, Murray JI, Wood WB, Waterston RH. A negative regulatory loop between microRNA and Hox gene controls posterior identities in Caenorhabditis elegans. Plos Genetics. 6: e1001089. PMID 20824072 DOI: 10.1371/journal.pgen.1001089  1
2010 Agarwal A, Koppstein D, Rozowsky J, Sboner A, Habegger L, Hillier LW, Sasidharan R, Reinke V, Waterston RH, Gerstein M. Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays Bmc Genomics. 11. PMID 20565764 DOI: 10.1186/1471-2164-11-383  1
2010 Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, ... ... Waterston RH, et al. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. Plos Genetics. 6: e1000848. PMID 20174564 DOI: 10.1371/journal.pgen.1000848  1
2010 Aydin Z, Murray JI, Waterston RH, Noble WS. Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo. Bmc Bioinformatics. 11: 84. PMID 20146825 DOI: 10.1186/1471-2105-11-84  1
2010 Zhao Z, Flibotte S, Murray JI, Blick D, Boyle TJ, Gupta B, Moerman DG, Waterston RH. New tools for investigating the comparative biology of Caenorhabditis briggsae and C. elegans. Genetics. 184: 853-63. PMID 20008572 DOI: 10.1534/genetics.109.110270  1
2009 Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, ... Waterston RH, et al. Unlocking the secrets of the genome. Nature. 459: 927-30. PMID 19536255 DOI: 10.1038/459927a  1
2009 Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH. Massively parallel sequencing of the polyadenylated transcriptome of C. elegans Genome Research. 19: 657-666. PMID 19181841 DOI: 10.1101/gr.088112.108  1
2009 Flibotte S, Edgley ML, Maydan J, Taylor J, Zapf R, Waterston R, Moerman DG. Rapid high resolution single nucleotide polymorphism-comparative genome hybridization mapping in Caenorhabditis elegans Genetics. 181: 33-37. PMID 18957702 DOI: 10.1534/genetics.108.096487  1
2008 Murray JI, Bao Z, Boyle TJ, Boeck ME, Mericle BL, Nicholas TJ, Zhao Z, Sandel MJ, Waterston RH. Automated analysis of embryonic gene expression with cellular resolution in C. elegans. Nature Methods. 5: 703-9. PMID 18587405 DOI: 10.1038/nmeth.1228  1
2008 Yoshimura S, Murray JI, Lu Y, Waterston RH, Shaham S. mls-2 and vab-3 Control glia development, hlh-17/Olig expression and glia-dependent neurite extension in C. elegans. Development (Cambridge, England). 135: 2263-75. PMID 18508862 DOI: 10.1242/dev.019547  1
2008 Bao Z, Zhao Z, Boyle TJ, Murray JI, Waterston RH. Control of cell cycle timing during C. elegans embryogenesis. Developmental Biology. 318: 65-72. PMID 18430415 DOI: 10.1016/j.ydbio.2008.02.054  1
2008 Zhao Z, Boyle TJ, Bao Z, Murray JI, Mericle B, Waterston RH. Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans. Developmental Biology. 314: 93-9. PMID 18164284 DOI: 10.1016/j.ydbio.2007.11.015  1
2007 Hillier LW, Miller RD, Baird SE, Chinwalla A, Fulton LA, Koboldt DC, Waterston RH. Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny. Plos Biology. 5: e167. PMID 17608563 DOI: 10.1371/journal.pbio.0050167  1
2007 Eichler EE, Nickerson DA, Altshuler D, Bowcock AM, Brooks LD, Carter NP, Church DM, Felsenfeld A, Guyer M, Lee C, Lupski JR, Mullikin JC, Pritchard JK, Sebat J, ... ... Waterston RH, et al. Completing the map of human genetic variation. Nature. 447: 161-5. PMID 17495918 DOI: 10.1038/447161a  1
2006 Mitreva M, Wendl MC, Martin J, Wylie T, Yin Y, Larson A, Parkinson J, Waterston RH, McCarter JP. Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species. Genome Biology. 7: R75. PMID 26271136  0.72
2006 Murray JI, Bao Z, Boyle TJ, Waterston RH. The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree. Nature Protocols. 1: 1468-76. PMID 17406437 DOI: 10.1038/nprot.2006.222  1
2006 Fukushige T, Brodigan TM, Schriefer LA, Waterston RH, Krause M. Defining the transcriptional redundancy of early bodywall muscle development in C. elegans: Evidence for a unified theory of animal muscle development Genes and Development. 20: 3395-3406. PMID 17142668 DOI: 10.1101/gad.1481706  1
2006 Fields S, Nickerson DA, Waterston RH, Ramsey PG. Positioning a medical school for modern biomedical research: The Department of Genome Sciences at the University of Washington School of Medicine Academic Medicine. 81: 882-885. PMID 16985347 DOI: 10.1097/01.ACM.0000238198.25633.e0  1
2006 Boyle TJ, Bao Z, Murray JI, Araya CL, Waterston RH. AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis. Bmc Bioinformatics. 7: 275. PMID 16740163 DOI: 10.1186/1471-2105-7-275  1
2006 Spradling A, Ganetsky B, Hieter P, Johnston M, Olson M, Orr-Weaver T, Rossant J, Sanchez A, Waterston R. New roles for model genetic organisms in understanding and treating human disease: report from the 2006 Genetics Society of America meeting. Genetics. 172: 2025-32. PMID 16636111  1
2006 Bao Z, Murray JI, Boyle T, Ooi SL, Sandel MJ, Waterston RH. Automated cell lineage tracing in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 103: 2707-12. PMID 16477039 DOI: 10.1073/pnas.0511111103  1
2006 Mitreva M, Wendl MC, Martin J, Wylie T, Yin Y, Larson A, Parkinson J, Waterston RH, McCarter JP. Codon usage patterns in Nematoda: Analysis based on over 25 million codons in thirty-two species Genome Biology. 7. DOI: 10.1186/gb-2006-7-8-r75  1
2005 Hillier LW, Coulson A, Murray JI, Bao Z, Sulston JE, Waterston RH. Genomics in C. elegans: so many genes, such a little worm. Genome Research. 15: 1651-60. PMID 16339362 DOI: 10.1101/gr.3729105  1
2005 Mitreva M, McCarter JP, Arasu P, Hawdon J, Martin J, Dante M, Wylie T, Xu J, Stajich JE, Kapulkin W, Clifton SW, Waterston RH, Wilson RK. Investigating hookworm genomes by comparative analysis of two Ancylostoma species. Bmc Genomics. 6: 58. PMID 15854223 DOI: 10.1186/1471-2164-6-58  1
2005 Kirsch S, Weiss B, Miner TL, Waterston RH, Clark RA, Eichler EE, Münch C, Schempp W, Rappold G. Interchromosomal segmental duplications of the pericentromeric region on the human Y chromosome. Genome Research. 15: 195-204. PMID 15653831 DOI: 10.1101/gr.3302705  1
2004 GuhaThakurta D, Schriefer LA, Waterston RH, Stormo GD. Novel transcription regulatory elements in Caenorhabditis elegans muscle genes Genome Research. 14: 2457-2468. PMID 15574824 DOI: 10.1101/gr.2961104  1
2004 Parkinson J, Mitreva M, Whitton C, Thomson M, Daub J, Martin J, Schmid R, Hall N, Barrell B, Waterston RH, McCarter JP, Blaxter ML. A transcriptomic analysis of the phylum Nematoda. Nature Genetics. 36: 1259-67. PMID 15543149 DOI: 10.1038/ng1472  1
2004 Mitreva M, Jasmer DP, Appleton J, Martin J, Dante M, Wylie T, Clifton SW, Waterston RH, McCarter JP. Gene discovery in the adenophorean nematode Trichinella spiralis: An analysis of transcription from three life cycle stages Molecular and Biochemical Parasitology. 137: 277-291. PMID 15383298 DOI: 10.1016/j.molbiopara.2004.05.015  1
2004 Schein J, Kucaba T, Sekhon M, Smailus D, Waterston R, Marra M. High-throughput BAC fingerprinting. Methods in Molecular Biology (Clifton, N.J.). 255: 143-156. PMID 15020821  1
2004 Mitreva M, McCarter JP, Martin J, Dante M, Wylie T, Chiapelli B, Pape D, Clifton SW, Nutman TB, Waterston RH. Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans Genome Research. 14: 209-220. PMID 14762059 DOI: 10.1101/gr.1524804  1
2004 Wylie T, Martin JC, Dante M, Mitreva MD, Clifton SW, Chinwalla A, Waterston RH, Wilson RK, McCarter JP. Nematode.net: A tool for navigating sequences from parasitic and free-living nematodes Nucleic Acids Research. 32: D423-D426. PMID 14681448 DOI: 10.1093/nar/gkh010  1
2003 Waterston RH, Hillier LW, Fulton LA, Fulton RS, Graves TA, Pepin KH, Bork P, Suyama M, Torrents D, Chinwalla AT, Mardis ER, McPherson JD, Wilson RK. The human genome: genes, pseudogenes, and variation on chromosome 7. Cold Spring Harbor Symposia On Quantitative Biology. 68: 13-22. PMID 15338598 DOI: 10.1101/sqb.2003.68.13  1
2003 Gibson-Brown JJ, Osoegawa K, McPherson JD, Waterston RH, De Jong PJ, Rokhsar DS, Holland LZ. A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 300: 5-22. PMID 14984031  1
2003 Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, ... ... Waterston RH, et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Plos Biology. 1: E45. PMID 14624247 DOI: 10.1371/journal.pbio.0000045  1
2003 Rozen S, Skaletsky H, Marszalek JD, Minx PJ, Cordum HS, Waterston RH, Wilson RK, Page DC. Abundant gene conversion between arms of palindromes in human and ape Y chromosomes. Nature. 423: 873-6. PMID 12815433 DOI: 10.1038/nature01723  1
2003 Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, Brown LG, Repping S, Pyntikova T, Ali J, Bieri T, Chinwalla A, Delehaunty A, Delehaunty K, Du H, Fewell G, ... ... Waterston RH, et al. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature. 423: 825-37. PMID 12815422 DOI: 10.1038/nature01722  1
2003 Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, Waterston R, Cohen BA, Johnston M. Finding functional features in Saccharomyces genomes by phylogenetic footprinting Science. 301: 71-76. PMID 12775844 DOI: 10.1126/science.1084337  1
2003 Fuhrmann DR, Krzywinski MI, Chiu R, Saeedi P, Schein JE, Bosdet IE, Chinwalla A, Hillier LW, Waterston RH, McPherson JD, Jones SJM, Marra MA. Software for automated analysis of DNA fingerprinting gels Genome Research. 13: 940-953. PMID 12727910 DOI: 10.1101/gr.904303  1
2003 McCarter JP, Mitreva MD, Martin J, Dante M, Wylie T, Rao U, Pape D, Bowers Y, Theising B, Murphy CV, Kloek AP, Chiapelli BJ, Clifton SW, Bird DM, Waterston RH. Analysis and functional classification of transcripts from the nematode Meloidogyne incognita. Genome Biology. 4: R26. PMID 12702207  1
2003 Waterston RH, Lander ES, Sulston JE. More on the sequencing of the human genome. Proceedings of the National Academy of Sciences of the United States of America. 100: 3022-4; author reply. PMID 12631699 DOI: 10.1073/pnas.0634129100  1
2003 Li L, Brunk BP, Kissinger JC, Pape D, Tang K, Cole RH, Martin J, Wylie T, Dante M, Fogarty SJ, Howe DK, Liberator P, Diaz C, Anderson J, White M, ... ... Waterston RH, et al. Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database. Genome Research. 13: 443-54. PMID 12618375 DOI: 10.1101/gr.693203  1
2003 McCarter JP, Mitreva M, Clifton SW, Bird DM, Waterston RH. Nematode gene sequences: Update for December 2003 Journal of Nematology. 35: 465-469.  1
2002 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/nature01262  1
2002 Wendl MC, Waterston RH. Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing Genome Research. 12: 1943-1949. PMID 12466299 DOI: 10.1101/gr.655102  1
2002 Gregory SG, Sekhon M, Schein J, Zhao S, Osoegawa K, Scott CE, Evans RS, Burridge PW, Cox TV, Fox CA, Hutton RD, Mullenger IR, Phillips KJ, Smith J, Stalker J, ... ... Waterston RH, et al. A physical map of the mouse genome. Nature. 418: 743-50. PMID 12181558 DOI: 10.1038/nature00957  1
2002 Shoemaker R, Keim P, Vodkin L, Retzel E, Clifton SW, Waterston R, Smoller D, Coryell V, Khanna A, Erpelding J, Gai X, Brendel V, Raph-Schmidt C, Shoop EG, Vielweber CJ, et al. A compilation of soybean ESTs: Generation and analysis Genome. 45: 329-338. PMID 11962630 DOI: 10.1139/g01-150  1
2002 Guhathakurta D, Schriefer LA, Hresko MC, Waterston RH, Stormo GD. Identifying muscle regulatory elements and genes in the nematode Caenorhabditis elegans. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 425-436. PMID 11928496  1
2002 Waterston RH, Lander ES, Sulston JE. On the sequencing of the human genome. Proceedings of the National Academy of Sciences of the United States of America. 99: 3712-6. PMID 11880605 DOI: 10.1073/pnas.042692499  1
2002 McCarter JP, Clifton SW, Bird DM, Waterston RH. Nematode gene sequences, update for June 2002 Journal of Nematology. 34: 71-74.  1
2001 Lindblad-Toh K, Lander ES, McPherson JD, Waterston RH, Rodgers J, Birney E. Progress in sequencing the mouse genome. Genesis (New York, N.Y. : 2000). 31: 137-41. PMID 11783003 DOI: 10.1002/gene.10016  1
2001 Kuroda-Kawaguchi T, Skaletsky H, Brown LG, Minx PJ, Cordum HS, Waterston RH, Wilson RK, Silber S, Oates R, Rozen S, Page DC. The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men. Nature Genetics. 29: 279-86. PMID 11687796 DOI: 10.1038/ng757  1
2001 McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, Hou S, Layman D, Leonard S, Nguyen C, Scott K, ... ... Waterston R, et al. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 Nature. 413: 852-856. PMID 11677609 DOI: 10.1038/35101614  1
2001 Jones SJ, Riddle DL, Pouzyrev AT, Velculescu VE, Hillier L, Eddy SR, Stricklin SL, Baillie DL, Waterston R, Marra MA. Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans. Genome Research. 11: 1346-52. PMID 11483575 DOI: 10.1101/gr.184401  1
2001 Cliften PF, Hillier LW, Fulton L, Graves T, Miner T, Gish WR, Waterston RH, Johnston M. Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis Genome Research. 11: 1175-1186. PMID 11435399 DOI: 10.1101/gr.182901  1
2001 Wicks SR, Yeh RT, Gish WR, Waterston RH, Plasterk RH. Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map. Nature Genetics. 28: 160-4. PMID 11381264 DOI: 10.1038/88878  1
2001 Tilford CA, Kuroda-Kawaguchi T, Skaletsky H, Rozen S, Brown LG, Rosenberg M, McPherson JD, Wylie K, Sekhon M, Kucaba TA, Waterston RH, Page DC. A physical map of the human Y chromosome. Nature. 409: 943-5. PMID 11237016 DOI: 10.1038/35057170  1
2001 McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, et al. A physical map of the human genome. Nature. 409: 934-41. PMID 11237014 DOI: 10.1038/35057157  1
2001 Sachidanandam R, Weissman D, Schmidt SC, Kakol JM, Stein LD, Marth G, Sherry S, Mullikin JC, Mortimore BJ, Willey DL, Hunt SE, Cole CG, Coggill PC, Rice CM, Ning Z, ... ... Waterston RH, et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature. 409: 928-33. PMID 11237013 DOI: 10.1038/35057149  1
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Waterston RH, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062  1
2001 Wendl MC, Marra MA, Hillier LW, Chinwalla AT, Wilson RK, Waterston RH. Theories and applications for sequencing randomly selected clones Genome Research. 11: 274-280. PMID 11157790 DOI: 10.1101/gr.GR-1339R  1
2000 Emmert-Buck MR, Strausberg RL, Krizman DB, Bonaldo MF, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, ... ... Waterston RH, et al. Molecular profiling of clinical tissues specimens: feasibility and applications. The Journal of Molecular Diagnostics : Jmd. 2: 60-6. PMID 11272889  1
2000 Hoppe PE, Waterston RH. A region of the myosin rod important for interaction with paramyosin in Caenorhabditis elegans striated muscle Genetics. 156: 631-643. PMID 11014812  1
2000 Emmert-Buck MR, Strausberg RL, Krizman DB, Bonaldo MF, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, ... ... Waterston RH, et al. Molecular profiling of clinical tissue specimens: feasibility and applications. The American Journal of Pathology. 156: 1109-15. PMID 10751334 DOI: 10.1016/S0002-9440(10)64979-6  1
2000 Ellsworth RE, Jamison DC, Touchman JW, Chissoe SL, Braden Maduro VV, Bouffard GG, Dietrich NL, Beckstrom-Sternberg SM, Lyer LM, Weintraub LA, Cotton M, Courtney L, Edwards J, Maupin R, Ozersky P, ... ... Waterston RH, et al. Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes Proceedings of the National Academy of Sciences of the United States of America. 97: 1172-1177. PMID 10655503 DOI: 10.1073/pnas.97.3.1172  1
2000 McCarter JP, Bird DM, Clifton SW, Waterston RH. Nematode gene sequences, December 2000 update Journal of Nematology. 32: 331-333.  1
1999 Marra MA, Kucaba TA, Hillier LW, Waterston RH. High-throughput plasmid DNA purification for 3 cents per sample. Nucleic Acids Research. 27: e37. PMID 10572189  1
1999 Hresko MC, Schriefer LA, Shrimankar P, Waterston RH. Myotactin, a novel hypodermal protein involved in muscle-cell adhesion in Caenorhabditis elegans Journal of Cell Biology. 146: 659-672. PMID 10444073 DOI: 10.1083/jcb.146.3.659  1
1999 Marra M, Kucaba T, Sekhon M, Hillier L, Martienssen R, Chinwalla A, Crockett J, Fedele J, Grover H, Gund C, McCombie WR, McDonald K, McPherson J, Mudd N, Parnell L, ... ... Waterston R, et al. zA map for sequence analysis of the Arabidopsis thaliana genome. Nature Genetics. 22: 265-70. PMID 10391214 DOI: 10.1038/10327  1
1999 Marra M, Hillier L, Kucaba T, Allen M, Barstead R, Beck C, Blistain A, Bonaldo M, Bowers Y, Bowles L, Cardenas M, Chamberlain A, Chappell J, Clifton S, Favello A, ... ... Waterston R, et al. An encyclopedia of mouse genes. Nature Genetics. 21: 191-4. PMID 9988271 DOI: 10.1038/5976  1
1998 Waterston R, Sulston JE. The Human Genome Project: reaching the finish line. Science (New York, N.Y.). 282: 53-4. PMID 9786797 DOI: 10.1126/science.282.5386.53  1
1998 Marra MA, Hillier L, Waterston RH. Expressed sequence tags--ESTablishing bridges between genomes Trends in Genetics : Tig. 14: 4-7. PMID 9448457 DOI: 10.1016/S0168-9525(97)01355-3  1
1998 Ajioka JW, Boothroyd JC, Brunk BP, Hehl A, Hillier L, Manger ID, Marra M, Overton GC, Roos DS, Wan KL, Waterston R, Sibley LD. Gene discovery by EST sequencing in Toxoplasma gondii reveals sequences restricted to the Apicomplexa. Genome Research. 8: 18-28. PMID 9445484 DOI: 10.1101/gr.8.1.18  1
1997 Marra MA, Kucaba TA, Dietrich NL, Green ED, Brownstein B, Wilson RK, McDonald KM, Hillier LW, McPherson JD, Waterston RH. High Throughput Fingerprint Analysis of Large-Insert Clones Genome Research. 7: 1072-1084. PMID 9371743 DOI: 10.1101/gr.7.11.1072  1
1997 Chissoe SL, Marra MA, Hillier L, Brinkman R, Wilson RK, Waterston RH. Representation of cloned genomic sequences in two sequencing vectors: correlation of DNA sequence and subclone distribution. Nucleic Acids Research. 25: 2960-6. PMID 9224593 DOI: 10.1093/nar/25.15.2960  1
1996 Hoppe PE, Waterston RH. Hydrophobicity variations along the surface of the coiled-coil rod may mediate striated muscle myosin assembly in Caenorhabditis elegans Journal of Cell Biology. 135: 371-382. PMID 8896595 DOI: 10.1083/jcb.135.2.371  1
1996 Hillier L, Lennon G, Becker M, Bonaldo MF, Chiapelli B, Chissoe S, Dietrich N, DuBuque T, Favello A, Gish W, Hawkins M, Hultman M, Kucaba T, Lacy M, Le M, ... ... Waterston R, et al. Generation and analysis of 280,000 human expressed sequence tags Genome Research. 6: 807-828. PMID 8889549 DOI: 10.1101/gr.6.9.807  1
1996 Moulder GL, Huang MM, Waterston RH, Barstead RJ. Talin requires β-integrin, but not vinculin, for its assembly into focal adhesion-like structures in the nematode Caenorhabditis elegans Molecular Biology of the Cell. 7: 1181-1193. PMID 8856663 DOI: 10.1091/mbc.7.8.1181  1
1996 Liu J, Schrank B, Waterston RH. Interaction between a putative mechanosensory membrane channel and a collagen Science. 273: 361-364. PMID 8662524 DOI: 10.1126/science.273.5273.361  1
1996 Waddle JA, Karpova TS, Waterston RH, Cooper JA. Movement of cortical actin patches in yeast Journal of Cell Biology. 132: 861-870. PMID 8603918 DOI: 10.1083/jcb.132.5.861  1
1995 Vaudin M, Roopra A, Hillier L, Brinkman R, Sulston J, Wilson RK, Waterston RH. The construction and analysis of M13 libraries prepared from YAC DNA. Nucleic Acids Research. 23: 670-4. PMID 7899089 DOI: 10.1093/nar/23.4.670  1
1995 Hodgkin J, Plasterk RHA, Waterston RH. The nematode Caenorhabditis elegans and its genome Science. 270: 410-414. PMID 7569995 DOI: 10.1126/science.270.5235.410  1
1995 Waterston R, Sulston J. The genome of Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 92: 10836-40. PMID 7479894 DOI: 10.1073/pnas.92.24.10836  1
1994 Hresko MC, Williams BD, Waterston RH. Assembly of body wall muscle and muscle cell attachment structures in Caenorhabditis elegans. The Journal of Cell Biology. 124: 491-506. PMID 8106548 DOI: 10.1083/jcb.124.4.491  1
1994 Williams BD, Waterston RH. Genes critical for muscle development and function in Caenorhabditis elegans identified through lethal mutations. The Journal of Cell Biology. 124: 475-90. PMID 8106547 DOI: 10.1083/jcb.124.4.475  1
1994 Goetinck S, Waterston RH. The Caenorhabditis elegans muscle-affecting gene unc-87 encodesa novel thin filament-associated protein Journal of Cell Biology. 127: 79-93. PMID 7929573 DOI: 10.1083/jcb.127.1.79  1
1994 Goetinck S, Waterston RH. The Caenorhabditis elegans UNC-87 protein is essential for maintenance, but not assembly, of bodywall muscle Journal of Cell Biology. 127: 71-78. PMID 7929572 DOI: 10.1083/jcb.127.1.71  1
1994 Schroer TA, Fyrberg E, Cooper JA, Waterston RH, Helfman D, Pollard TD, Meyer DI. Actin-related protein nomenclature and classification. The Journal of Cell Biology. 127: 1777-8. PMID 7806557 DOI: 10.1083/jcb.127.6.1777  1
1993 Green P, Lipman D, Hillier L, Waterston R, States D, Claverie JM. Ancient conserved regions in new gene sequences and the protein databases Science. 259: 1711-1716. PMID 8456298 DOI: 10.1126/science.8456298  1
1993 Waddle JA, Cooper JA, Waterston RH. The α and β subunits of nematode actin capping protein function in yeast Molecular Biology of the Cell. 4: 907-917. PMID 8257793 DOI: 10.1091/mbc.4.9.907  1
1993 Waterston R, Ainscough R, Anderson K, Berks M, Blair D, Connell M, Cooper J, Coulson A, Craxton M, Dear S, Du Z, Durbin R, Favello A, Fulton L, Green P, et al. The genome of the nematode Caenorhabditis elegans Cold Spring Harbor Symposia On Quantitative Biology. 58: 367-376. PMID 7956049 DOI: 10.1101/SQB.1993.058.01.043  1
1992 Green ED, Waterston RH. The human genome project: Prospects and implications for clinical medicine Obstetrical and Gynecological Survey. 47: 319-321. DOI: 10.1001/jama.1991.03470140078028  1
1991 Coulson A, Kozono Y, Lutterbach B, Shownkeen R, Sulston J, Waterston R. YACs and the C. elegans genome. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 13: 413-7. PMID 1953703 DOI: 10.1002/bies.950130809  1
1991 Barstead RJ, Waterston RH. Vinculin is essential for muscle function in the nematode Journal of Cell Biology. 114: 715-724. PMID 1907975 DOI: 10.1083/jcb.114.4.715  1
1991 Francis R, Waterston RH. Muscle cell attachment in Caenorhabditis elegans Journal of Cell Biology. 114: 465-479. PMID 1860880 DOI: 10.1083/jcb.114.3.465  1
1991 Barstead RJ, Kleiman L, Waterston RH. Cloning, sequencing, and mapping of an α-actinin gene from the nematode Caenorhabditis elegans Cell Motility and the Cytoskeleton. 20: 69-78. PMID 1756579 DOI: 10.1002/cm.970200108  1
1991 Moerman DG, Kiff JE, Waterston RH. Germline excision of the transposable element Tc1 in C.elegans Nucleic Acids Research. 19: 5669-5672. PMID 1658738 DOI: 10.1093/nar/19.20.5669  1
1990 Cangiano G, Ameer H, Waterston R, La Volpe A. Use of repetitive DNA probes as physical mapping strategy in Caenorhabditis elegans Nucleic Acids Research. 18: 5077-5081. PMID 2402436 DOI: 10.1093/nar/18.17.5077  1
1990 Kondo K, Makovec B, Waterston RH, Hodgkin J. Genetic and molecular analysis of eight tRNATrp amber suppressors in Caenorhabditis elegans Journal of Molecular Biology. 215: 7-19. PMID 2398498 DOI: 10.1016/S0022-2836(05)80090-7  1
1990 Fire A, Kondo K, Waterston R. Vectors for low copy transformation of C. elegans Nucleic Acids Research. 18: 4269. PMID 2377476 DOI: 10.1093/nar/18.14.4269  1
1990 Schriefer LA, Gebauer BK, Qiu LQQ, Waterston RH, Wilson RK. Low pressure DNA shearing: A method for random DNA sequence analysis Nucleic Acids Research. 18: 7455-7456. PMID 2259642 DOI: 10.1093/nar/18.24.7455  1
1990 Mori I, Moerman DG, Waterston RH. Interstrain crosses enhance excision of Tc1 transposable elements in Caenorhabditis elegans Mgg Molecular & General Genetics. 220: 251-255. PMID 2157953 DOI: 10.1007/BF00260490  1
1989 Benian GM, Kiff JE, Neckelmann N, Moerman DG, Waterston RH. Sequence of an unusually large protein implicated in regulation of myosin activity in C. elegans Nature. 342: 45-50. PMID 2812002 DOI: 10.1038/342045a0  1
1989 Waterston RH. Molecular genetic approaches to the study of motility in Caenorhabditis elegans Cell Motility and the Cytoskeleton. 14: 136-145. PMID 2684420 DOI: 10.1002/cm.970140123  1
1989 Medori R, Brooke MH, Waterston RH. Two dissimilar brothers with Becker's dystrophy have an identical genetic defect. Neurology. 39: 1493-6. PMID 2682349 DOI: 10.1212/WNL.39.11.1493  1
1989 Medori R, Brooke MH, Waterston RH. Genetic abnormalities in Duchenne and Becker dystrophies: clinical correlations. Neurology. 39: 461-5. PMID 2648185 DOI: 10.1212/WNL.39.4.461  1
1988 Hoffman EP, Fischbeck KH, Brown RH, Johnson M, Medori R, Loike JD, Harris JB, Waterston R, Brooke M, Specht L. Characterization of dystrophin in muscle-biopsy specimens from patients with Duchenne's or Becker's muscular dystrophy. The New England Journal of Medicine. 318: 1363-8. PMID 3285207 DOI: 10.1056/NEJM198805263182104  1
1988 Kondo K, Hodgkin J, Waterston RH. Differential expression of five tRNA(UAGTrp) amber suppressors in Caenorhabditis elegans Molecular and Cellular Biology. 8: 3627-3635. PMID 3221861 DOI: 10.1128/MCB.8.9.3627  1
1988 Coulson A, Waterston R, Kiff J, Sulston J, Kohara Y. Genome linking with yeast artificial chromosomes. Nature. 335: 184-6. PMID 3045566 DOI: 10.1038/335184a0  1
1988 Moerman DG, Benian GM, Barstead RJ, Schriefer LA, Waterston RH. Identification and intracellular localization of the unc-22 gene product of Caenorhabditis elegans Genes & Development. 2: 93-105. PMID 2833427 DOI: 10.1101/gad.2.1.93  1
1988 Mori I, Benian GM, Moerman DG, Waterston RH. Transposable element Tc1 of Caenorhabditis elegans recognizes specific target sequences for integration Proceedings of the National Academy of Sciences of the United States of America. 85: 861-864. PMID 2829205 DOI: 10.1073/pnas.85.3.861  1
1988 Kiff JE, Moerman DG, Schriefer LA, Waterston RH. Transposon-induced deletions in unc-22 of C. elegans associated with almost normal gene activity Nature. 331: 631-633. PMID 2829031 DOI: 10.1038/331631a0  1
1987 Gibson TJ, Rosenthal A, Waterston RH. Lorist6, a cosmid vector with BamHI, NotI, ScaI and HindIII cloning sites and altered neomycin phosphotransferase gene expression. Gene. 53: 283-6. PMID 3038694 DOI: 10.1016/0378-1119(87)90017-5  1
1987 Hodgkin J, Kondo K, Waterston RH. Suppression in the nematode Caenorhabditis elegans Trends in Genetics. 3: 325-329. DOI: 10.1016/0168-9525(87)90281-2  1
1986 Moerman DG, Benian GM, Waterston RH. Molecular cloning of the muscle gene unc-22 in Caenorhabditis elegans by Tc1 transposon tagging Proceedings of the National Academy of Sciences of the United States of America. 83: 2579-2583. PMID 3010313 DOI: 10.1073/pnas.83.8.2579  1
1985 Dibb NJ, Brown DM, Karn J, Moerman DG, Bolten SL, Waterston RH. Sequence analysis of mutations that affect the synthesis, assembly and enzymatic activity of the unc-54 myosin heavy chain of Caenorhabditis elegans Journal of Molecular Biology. 183: 543-551. PMID 4020869 DOI: 10.1016/0022-2836(85)90170-6  1
1985 Francis GR, Waterston RH. Muscle organization in Caenorhabditis elegans: Localization of proteins implicated in thin filament attachment and I-band organization Journal of Cell Biology. 101: 1532-1549. PMID 2413045 DOI: 10.1083/jcb.101.4.1532  1
1985 Waterston RH, Francis GR. Genetic analysis of muscle development in Caenorhabditis elegans Trends in Neurosciences. 8: 270-276. DOI: 10.1016/0166-2236(85)90101-8  1
1984 Waterston RH, Hirsh D, Lane TR. Dominant mutations affecting muscle structure in Caenorhabditis elegans that map near the actin gene cluster. Journal of Molecular Biology. 180: 473-96. PMID 6527380 DOI: 10.1016/0022-2836(84)90023-8  1
1984 Fischhoff DA, Waterston RH, Olson MV. The yeast cloning vector YEp13 contains a tRNA3 Leu gene that can mutate to an amber suppressor Gene. 27: 239-251. PMID 6329904 DOI: 10.1016/0378-1119(84)90069-6  1
1984 Landel CP, Krause M, Waterston RH, Hirsh D. DNA rearrangements of the actin gene cluster in Caenorhabditis elegans accompany reversion of three muscle mutants. Journal of Molecular Biology. 180: 497-513. PMID 6098683 DOI: 10.1016/0022-2836(84)90024-X  1
1984 Bolten SL, Powell-Abel P, Fischhoff DA, Waterston RH. The sup-7(st5) X gene of Caenorhabditis elegans encodes a tRNA(UAG)(Trp) amber suppressor Proceedings of the National Academy of Sciences of the United States of America. 81: 6784-6788. PMID 6093119 DOI: 10.1073/pnas.81.21.6784  1
1983 Wills N, Gesteland RF, Karn J, Barnett L, Bolten S, Waterston RH. The genes sup-7 X and sup-5 III of C. elegans suppress amber nonsense mutations via altered transfer RNA. Cell. 33: 575-83. PMID 6571695 DOI: 10.1016/0092-8674(83)90438-5  1
1982 Moerman DG, Plurad S, Waterston RH, Baillie DL. Mutations in the unc-54 myosin heavy chain gene of caenorhabditis elegans that alter contractility but not muscle structure Cell. 29: 773-781. PMID 7151169 DOI: 10.1016/0092-8674(82)90439-1  1
1982 Waterston RH, Smith KC, Moerman DG. Genetic fine structure analysis of the myosin heavy chain gene unc-54 of Caenorhabditis elegans Journal of Molecular Biology. 158: 1-15. PMID 7120406 DOI: 10.1016/0022-2836(82)90447-8  1
1980 Waterston RH, Thomson JN, Brenner S. Mutants with altered muscle structure in Caenorhabditis elegans Developmental Biology. 77: 271-302. PMID 7190524 DOI: 10.1016/0012-1606(80)90475-3  1
1978 Waterston RH, Brenner S. A suppressor mutation in the nematode acting on specific alleles of many genes Nature. 275: 715-719. PMID 703836 DOI: 10.1038/275715a0  1
1977 Macleod AR, Waterston RH, Fishpool RM, Brenner S. Identification of the structural gene for a myosin heavy-chain in Caenorhabditis elegans Journal of Molecular Biology. 114: 133-140. PMID 909083 DOI: 10.1016/0022-2836(77)90287-X  1
1977 Waterston RH, Fishpool RM, Brenner S. Mutants affecting paramyosin in Caenorhabditis elegans Journal of Molecular Biology. 117: 679-697. PMID 564970 DOI: 10.1016/0022-2836(77)90064-X  1
1977 MacLeod AR, Waterston RH, Brenner S. An internal deletion mutant of a myosin heavy chain in Caenorhabditis elegans Proceedings of the National Academy of Sciences of the United States of America. 74: 5336-5340. PMID 271956 DOI: 10.1073/pnas.74.12.5336  1
1974 Epstein HF, Waterston RH, Brenner S. A mutant affecting the heavy chain of myosin in Caenorhabditis elegans. Journal of Molecular Biology. 90: 291-300. PMID 4453018 DOI: 10.1016/0022-2836(74)90374-X  1
1974 Waterston RH, Epstein HF, Brenner S. Paramyosin of Caenorhabditis elegans. Journal of Molecular Biology. 90: 285-90. PMID 4217841 DOI: 10.1016/0022-2836(74)90373-8  1
1970 Waterston RH. Antigen competition: A paradox Science. 170: 1108-1110. PMID 4920187 DOI: 10.1126/science.170.3962.1108  1
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