Robert Waterston, M.D. - Publications

Affiliations: 
Genome Sciences Washington University, Saint Louis, St. Louis, MO 

85/108 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Thompson OA, Snoek LB, Nijveen H, Sterken MG, Volkers RJ, Brenchley R, Van't Hof A, Bevers RP, Cossins AR, Yanai I, Hajnal A, Schmid T, Perkins JD, Spencer D, Kruglyak L, ... ... Waterston RH, et al. Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856. Genetics. 200: 975-89. PMID 25995208 DOI: 10.1534/genetics.115.175950  0.72
2014 Spencer WC, McWhirter R, Miller T, Strasbourger P, Thompson O, Hillier LW, Waterston RH, Miller DM. Isolation of specific neurons from C. elegans larvae for gene expression profiling. Plos One. 9: e112102. PMID 25372608 DOI: 10.1371/journal.pone.0112102  0.72
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... Waterston RH, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/nature13668  0.72
2014 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, ... ... Waterston RH, et al. Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. 512: 400-5. PMID 25164749 DOI: 10.1038/nature13497  0.72
2013 Thompson O, Edgley M, Strasbourger P, Flibotte S, Ewing B, Adair R, Au V, Chaudhry I, Fernando L, Hutter H, Kieffer A, Lau J, Lee N, Miller A, Raymant G, ... ... Waterston RH, et al. The million mutation project: a new approach to genetics in Caenorhabditis elegans. Genome Research. 23: 1749-62. PMID 23800452 DOI: 10.1101/gr.157651.113  0.72
2013 Mace DL, Weisdepp P, Gevirtzman L, Boyle T, Waterston RH. A high-fidelity cell lineage tracing method for obtaining systematic spatiotemporal gene expression patterns in caenorhabditis elegans G3: Genes, Genomes, Genetics. 3: 851-863. DOI: 10.1534/g3.113.005918  0.72
2012 Sharanya D, Thillainathan B, Marri S, Bojanala N, Taylor J, Flibotte S, Moerman DG, Waterston RH, Gupta BP. Genetic control of vulval development in Caenorhabditis briggsae. G3 (Bethesda, Md.). 2: 1625-1641. PMID 23275885 DOI: 10.1534/g3.112.004598  0.72
2012 Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, Angermann K, Hasse S, Rupprecht M, Vinis E, Tinney M, Preston E, Zinke A, Enst S, Teichgraber T, Janette J, ... ... Waterston RH, et al. A genome-scale resource for in vivo tag-based protein function exploration in C. elegans. Cell. 150: 855-66. PMID 22901814 DOI: 10.1016/j.cell.2012.08.001  0.72
2012 Murray JI, Boyle TJ, Preston E, Vafeados D, Mericle B, Weisdepp P, Zhao Z, Bao Z, Boeck M, Waterston RH. Multidimensional regulation of gene expression in the C. elegans embryo. Genome Research. 22: 1282-94. PMID 22508763 DOI: 10.1101/gr.131920.111  0.72
2011 Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM. Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nature Genetics. 43: 1179-85. PMID 22019781 DOI: 10.1038/ng.948  0.72
2011 Boeck ME, Boyle T, Bao Z, Murray J, Mericle B, Waterston R. Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development Developmental Biology. 358: 345-355. PMID 21854766 DOI: 10.1016/j.ydbio.2011.08.002  0.72
2011 Engelmann I, Griffon A, Tichit L, Montañana-Sanchis F, Wang G, Reinke V, Waterston RH, Hillier LW, Ewbank JJ. A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans Plos One. 6. PMID 21602919 DOI: 10.1371/journal.pone.0019055  0.72
2011 Tian C, Shi H, Colledge C, Stern M, Waterston R, Liu J. The C. elegans SoxC protein SEM-2 opposes differentiation factors to promote a proliferative blast cell fate in the postembryonic mesoderm. Development (Cambridge, England). 138: 1033-43. PMID 21307099 DOI: 10.1242/dev.062240  0.72
2011 Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, et al. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Research. 21: 276-85. PMID 21177971 DOI: 10.1101/gr.110189.110  0.72
2011 Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, et al. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Research. 21: 245-54. PMID 21177963 DOI: 10.1101/gr.114587.110  0.72
2011 Allen MA, Hillier LW, Waterston RH, Blumenthal T. A global analysis of C. elegans trans-splicing Genome Research. 21: 255-264. PMID 21177958 DOI: 10.1101/gr.113811.110  0.72
2011 Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, et al. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data (Genome Research (2011) 21, (276-285)) Genome Research. 21: 811.  0.72
2010 Zhao Z, Boyle TJ, Liu Z, Murray JI, Wood WB, Waterston RH. A negative regulatory loop between microRNA and Hox gene controls posterior identities in Caenorhabditis elegans. Plos Genetics. 6: e1001089. PMID 20824072 DOI: 10.1371/journal.pgen.1001089  0.72
2010 Agarwal A, Koppstein D, Rozowsky J, Sboner A, Habegger L, Hillier LW, Sasidharan R, Reinke V, Waterston RH, Gerstein M. Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays Bmc Genomics. 11. PMID 20565764 DOI: 10.1186/1471-2164-11-383  0.72
2010 Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, ... ... Waterston RH, et al. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. Plos Genetics. 6: e1000848. PMID 20174564 DOI: 10.1371/journal.pgen.1000848  0.72
2010 Aydin Z, Murray JI, Waterston RH, Noble WS. Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo. Bmc Bioinformatics. 11: 84. PMID 20146825 DOI: 10.1186/1471-2105-11-84  0.72
2010 Zhao Z, Flibotte S, Murray JI, Blick D, Boyle TJ, Gupta B, Moerman DG, Waterston RH. New tools for investigating the comparative biology of Caenorhabditis briggsae and C. elegans. Genetics. 184: 853-63. PMID 20008572 DOI: 10.1534/genetics.109.110270  0.72
2009 Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, ... Waterston RH, et al. Unlocking the secrets of the genome. Nature. 459: 927-30. PMID 19536255 DOI: 10.1038/459927a  0.72
2009 Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH. Massively parallel sequencing of the polyadenylated transcriptome of C. elegans Genome Research. 19: 657-666. PMID 19181841 DOI: 10.1101/gr.088112.108  0.72
2009 Flibotte S, Edgley ML, Maydan J, Taylor J, Zapf R, Waterston R, Moerman DG. Rapid high resolution single nucleotide polymorphism-comparative genome hybridization mapping in Caenorhabditis elegans Genetics. 181: 33-37. PMID 18957702 DOI: 10.1534/genetics.108.096487  0.72
2008 Murray JI, Bao Z, Boyle TJ, Boeck ME, Mericle BL, Nicholas TJ, Zhao Z, Sandel MJ, Waterston RH. Automated analysis of embryonic gene expression with cellular resolution in C. elegans. Nature Methods. 5: 703-9. PMID 18587405 DOI: 10.1038/nmeth.1228  0.72
2008 Yoshimura S, Murray JI, Lu Y, Waterston RH, Shaham S. mls-2 and vab-3 Control glia development, hlh-17/Olig expression and glia-dependent neurite extension in C. elegans. Development (Cambridge, England). 135: 2263-75. PMID 18508862 DOI: 10.1242/dev.019547  0.72
2008 Bao Z, Zhao Z, Boyle TJ, Murray JI, Waterston RH. Control of cell cycle timing during C. elegans embryogenesis. Developmental Biology. 318: 65-72. PMID 18430415 DOI: 10.1016/j.ydbio.2008.02.054  0.72
2008 Zhao Z, Boyle TJ, Bao Z, Murray JI, Mericle B, Waterston RH. Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans. Developmental Biology. 314: 93-9. PMID 18164284 DOI: 10.1016/j.ydbio.2007.11.015  0.72
2007 Hillier LW, Miller RD, Baird SE, Chinwalla A, Fulton LA, Koboldt DC, Waterston RH. Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny. Plos Biology. 5: e167. PMID 17608563 DOI: 10.1371/journal.pbio.0050167  0.72
2007 Eichler EE, Nickerson DA, Altshuler D, Bowcock AM, Brooks LD, Carter NP, Church DM, Felsenfeld A, Guyer M, Lee C, Lupski JR, Mullikin JC, Pritchard JK, Sebat J, ... ... Waterston RH, et al. Completing the map of human genetic variation. Nature. 447: 161-5. PMID 17495918 DOI: 10.1038/447161a  0.72
2006 Mitreva M, Wendl MC, Martin J, Wylie T, Yin Y, Larson A, Parkinson J, Waterston RH, McCarter JP. Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species. Genome Biology. 7: R75. PMID 26271136  0.72
2006 Murray JI, Bao Z, Boyle TJ, Waterston RH. The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree. Nature Protocols. 1: 1468-76. PMID 17406437 DOI: 10.1038/nprot.2006.222  0.72
2006 Fukushige T, Brodigan TM, Schriefer LA, Waterston RH, Krause M. Defining the transcriptional redundancy of early bodywall muscle development in C. elegans: Evidence for a unified theory of animal muscle development Genes and Development. 20: 3395-3406. PMID 17142668 DOI: 10.1101/gad.1481706  0.72
2006 Fields S, Nickerson DA, Waterston RH, Ramsey PG. Positioning a medical school for modern biomedical research: The Department of Genome Sciences at the University of Washington School of Medicine Academic Medicine. 81: 882-885. PMID 16985347 DOI: 10.1097/01.ACM.0000238198.25633.e0  0.72
2006 Boyle TJ, Bao Z, Murray JI, Araya CL, Waterston RH. AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis. Bmc Bioinformatics. 7: 275. PMID 16740163 DOI: 10.1186/1471-2105-7-275  0.72
2006 Spradling A, Ganetsky B, Hieter P, Johnston M, Olson M, Orr-Weaver T, Rossant J, Sanchez A, Waterston R. New roles for model genetic organisms in understanding and treating human disease: report from the 2006 Genetics Society of America meeting. Genetics. 172: 2025-32. PMID 16636111  0.72
2006 Bao Z, Murray JI, Boyle T, Ooi SL, Sandel MJ, Waterston RH. Automated cell lineage tracing in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 103: 2707-12. PMID 16477039 DOI: 10.1073/pnas.0511111103  0.72
2006 Mitreva M, Wendl MC, Martin J, Wylie T, Yin Y, Larson A, Parkinson J, Waterston RH, McCarter JP. Codon usage patterns in Nematoda: Analysis based on over 25 million codons in thirty-two species Genome Biology. 7. DOI: 10.1186/gb-2006-7-8-r75  0.72
2005 Hillier LW, Coulson A, Murray JI, Bao Z, Sulston JE, Waterston RH. Genomics in C. elegans: so many genes, such a little worm. Genome Research. 15: 1651-60. PMID 16339362 DOI: 10.1101/gr.3729105  0.72
2005 Mitreva M, McCarter JP, Arasu P, Hawdon J, Martin J, Dante M, Wylie T, Xu J, Stajich JE, Kapulkin W, Clifton SW, Waterston RH, Wilson RK. Investigating hookworm genomes by comparative analysis of two Ancylostoma species. Bmc Genomics. 6: 58. PMID 15854223 DOI: 10.1186/1471-2164-6-58  0.72
2005 Kirsch S, Weiss B, Miner TL, Waterston RH, Clark RA, Eichler EE, Münch C, Schempp W, Rappold G. Interchromosomal segmental duplications of the pericentromeric region on the human Y chromosome. Genome Research. 15: 195-204. PMID 15653831 DOI: 10.1101/gr.3302705  0.72
2004 GuhaThakurta D, Schriefer LA, Waterston RH, Stormo GD. Novel transcription regulatory elements in Caenorhabditis elegans muscle genes Genome Research. 14: 2457-2468. PMID 15574824 DOI: 10.1101/gr.2961104  0.72
2004 Parkinson J, Mitreva M, Whitton C, Thomson M, Daub J, Martin J, Schmid R, Hall N, Barrell B, Waterston RH, McCarter JP, Blaxter ML. A transcriptomic analysis of the phylum Nematoda. Nature Genetics. 36: 1259-67. PMID 15543149 DOI: 10.1038/ng1472  0.72
2004 Mitreva M, Jasmer DP, Appleton J, Martin J, Dante M, Wylie T, Clifton SW, Waterston RH, McCarter JP. Gene discovery in the adenophorean nematode Trichinella spiralis: An analysis of transcription from three life cycle stages Molecular and Biochemical Parasitology. 137: 277-291. PMID 15383298 DOI: 10.1016/j.molbiopara.2004.05.015  0.72
2004 Schein J, Kucaba T, Sekhon M, Smailus D, Waterston R, Marra M. High-throughput BAC fingerprinting. Methods in Molecular Biology (Clifton, N.J.). 255: 143-156. PMID 15020821  0.72
2004 Mitreva M, McCarter JP, Martin J, Dante M, Wylie T, Chiapelli B, Pape D, Clifton SW, Nutman TB, Waterston RH. Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans Genome Research. 14: 209-220. PMID 14762059 DOI: 10.1101/gr.1524804  0.72
2004 Wylie T, Martin JC, Dante M, Mitreva MD, Clifton SW, Chinwalla A, Waterston RH, Wilson RK, McCarter JP. Nematode.net: A tool for navigating sequences from parasitic and free-living nematodes Nucleic Acids Research. 32: D423-D426. PMID 14681448  0.72
2003 Waterston RH, Hillier LW, Fulton LA, Fulton RS, Graves TA, Pepin KH, Bork P, Suyama M, Torrents D, Chinwalla AT, Mardis ER, McPherson JD, Wilson RK. The human genome: genes, pseudogenes, and variation on chromosome 7. Cold Spring Harbor Symposia On Quantitative Biology. 68: 13-22. PMID 15338598  0.72
2003 Gibson-Brown JJ, Osoegawa K, McPherson JD, Waterston RH, De Jong PJ, Rokhsar DS, Holland LZ. A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 300: 5-22. PMID 14984031  0.72
2003 Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, ... ... Waterston RH, et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Plos Biology. 1: E45. PMID 14624247 DOI: 10.1371/journal.pbio.0000045  0.72
2003 Rozen S, Skaletsky H, Marszalek JD, Minx PJ, Cordum HS, Waterston RH, Wilson RK, Page DC. Abundant gene conversion between arms of palindromes in human and ape Y chromosomes. Nature. 423: 873-6. PMID 12815433 DOI: 10.1038/nature01723  0.72
2003 Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, Brown LG, Repping S, Pyntikova T, Ali J, Bieri T, Chinwalla A, Delehaunty A, Delehaunty K, Du H, Fewell G, ... ... Waterston RH, et al. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature. 423: 825-37. PMID 12815422 DOI: 10.1038/nature01722  0.72
2003 Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, Waterston R, Cohen BA, Johnston M. Finding functional features in Saccharomyces genomes by phylogenetic footprinting Science. 301: 71-76. PMID 12775844 DOI: 10.1126/science.1084337  0.72
2003 Fuhrmann DR, Krzywinski MI, Chiu R, Saeedi P, Schein JE, Bosdet IE, Chinwalla A, Hillier LW, Waterston RH, McPherson JD, Jones SJM, Marra MA. Software for automated analysis of DNA fingerprinting gels Genome Research. 13: 940-953. PMID 12727910 DOI: 10.1101/gr.904303  0.72
2003 McCarter JP, Mitreva MD, Martin J, Dante M, Wylie T, Rao U, Pape D, Bowers Y, Theising B, Murphy CV, Kloek AP, Chiapelli BJ, Clifton SW, Bird DM, Waterston RH. Analysis and functional classification of transcripts from the nematode Meloidogyne incognita. Genome Biology. 4: R26. PMID 12702207  0.72
2003 Waterston RH, Lander ES, Sulston JE. More on the sequencing of the human genome. Proceedings of the National Academy of Sciences of the United States of America. 100: 3022-4; author reply. PMID 12631699 DOI: 10.1073/pnas.0634129100  0.72
2003 Li L, Brunk BP, Kissinger JC, Pape D, Tang K, Cole RH, Martin J, Wylie T, Dante M, Fogarty SJ, Howe DK, Liberator P, Diaz C, Anderson J, White M, ... ... Waterston RH, et al. Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database. Genome Research. 13: 443-54. PMID 12618375 DOI: 10.1101/gr.693203  0.72
2003 McCarter JP, Mitreva M, Clifton SW, Bird DM, Waterston RH. Nematode gene sequences: Update for December 2003 Journal of Nematology. 35: 465-469.  0.72
2002 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/nature01262  0.72
2002 Wendl MC, Waterston RH. Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing Genome Research. 12: 1943-1949. PMID 12466299 DOI: 10.1101/gr.655102  0.72
2002 Gregory SG, Sekhon M, Schein J, Zhao S, Osoegawa K, Scott CE, Evans RS, Burridge PW, Cox TV, Fox CA, Hutton RD, Mullenger IR, Phillips KJ, Smith J, Stalker J, ... ... Waterston RH, et al. A physical map of the mouse genome. Nature. 418: 743-50. PMID 12181558 DOI: 10.1038/nature00957  0.72
2002 Shoemaker R, Keim P, Vodkin L, Retzel E, Clifton SW, Waterston R, Smoller D, Coryell V, Khanna A, Erpelding J, Gai X, Brendel V, Raph-Schmidt C, Shoop EG, Vielweber CJ, et al. A compilation of soybean ESTs: Generation and analysis Genome. 45: 329-338. PMID 11962630 DOI: 10.1139/g01-150  0.72
2002 Guhathakurta D, Schriefer LA, Hresko MC, Waterston RH, Stormo GD. Identifying muscle regulatory elements and genes in the nematode Caenorhabditis elegans. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 425-436. PMID 11928496  0.72
2002 Waterston RH, Lander ES, Sulston JE. On the sequencing of the human genome. Proceedings of the National Academy of Sciences of the United States of America. 99: 3712-6. PMID 11880605 DOI: 10.1073/pnas.042692499  0.72
2002 McCarter JP, Clifton SW, Bird DM, Waterston RH. Nematode gene sequences, update for June 2002 Journal of Nematology. 34: 71-74.  0.72
2001 Lindblad-Toh K, Lander ES, McPherson JD, Waterston RH, Rodgers J, Birney E. Progress in sequencing the mouse genome. Genesis (New York, N.Y. : 2000). 31: 137-41. PMID 11783003 DOI: 10.1002/gene.10016  0.72
2001 Kuroda-Kawaguchi T, Skaletsky H, Brown LG, Minx PJ, Cordum HS, Waterston RH, Wilson RK, Silber S, Oates R, Rozen S, Page DC. The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men. Nature Genetics. 29: 279-86. PMID 11687796 DOI: 10.1038/ng757  0.72
2001 McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, Hou S, Layman D, Leonard S, Nguyen C, Scott K, ... ... Waterston R, et al. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 Nature. 413: 852-856. PMID 11677609 DOI: 10.1038/35101614  0.72
2001 Jones SJ, Riddle DL, Pouzyrev AT, Velculescu VE, Hillier L, Eddy SR, Stricklin SL, Baillie DL, Waterston R, Marra MA. Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans. Genome Research. 11: 1346-52. PMID 11483575 DOI: 10.1101/gr.184401  0.72
2001 Cliften PF, Hillier LW, Fulton L, Graves T, Miner T, Gish WR, Waterston RH, Johnston M. Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis Genome Research. 11: 1175-1186. PMID 11435399 DOI: 10.1101/gr.182901  0.72
2001 Wicks SR, Yeh RT, Gish WR, Waterston RH, Plasterk RH. Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map. Nature Genetics. 28: 160-4. PMID 11381264 DOI: 10.1038/88878  0.72
2001 Tilford CA, Kuroda-Kawaguchi T, Skaletsky H, Rozen S, Brown LG, Rosenberg M, McPherson JD, Wylie K, Sekhon M, Kucaba TA, Waterston RH, Page DC. A physical map of the human Y chromosome. Nature. 409: 943-5. PMID 11237016 DOI: 10.1038/35057170  0.72
2001 McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, et al. A physical map of the human genome. Nature. 409: 934-41. PMID 11237014 DOI: 10.1038/35057157  0.72
2001 Sachidanandam R, Weissman D, Schmidt SC, Kakol JM, Stein LD, Marth G, Sherry S, Mullikin JC, Mortimore BJ, Willey DL, Hunt SE, Cole CG, Coggill PC, Rice CM, Ning Z, ... ... Waterston RH, et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature. 409: 928-33. PMID 11237013 DOI: 10.1038/35057149  0.72
2001 Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, ... ... Waterston RH, et al. Initial sequencing and analysis of the human genome. Nature. 409: 860-921. PMID 11237011 DOI: 10.1038/35057062  0.72
2001 Wendl MC, Marra MA, Hillier LW, Chinwalla AT, Wilson RK, Waterston RH. Theories and applications for sequencing randomly selected clones Genome Research. 11: 274-280. PMID 11157790 DOI: 10.1101/gr.GR-1339R  0.72
2000 Emmert-Buck MR, Strausberg RL, Krizman DB, Bonaldo MF, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, ... ... Waterston RH, et al. Molecular profiling of clinical tissues specimens: feasibility and applications. The Journal of Molecular Diagnostics : Jmd. 2: 60-6. PMID 11272889  0.72
2000 Hoppe PE, Waterston RH. A region of the myosin rod important for interaction with paramyosin in Caenorhabditis elegans striated muscle Genetics. 156: 631-643. PMID 11014812  0.72
2000 Emmert-Buck MR, Strausberg RL, Krizman DB, Bonaldo MF, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, ... ... Waterston RH, et al. Molecular profiling of clinical tissue specimens: feasibility and applications. The American Journal of Pathology. 156: 1109-15. PMID 10751334 DOI: 10.1016/S0002-9440(10)64979-6  0.72
2000 Ellsworth RE, Jamison DC, Touchman JW, Chissoe SL, Braden Maduro VV, Bouffard GG, Dietrich NL, Beckstrom-Sternberg SM, Lyer LM, Weintraub LA, Cotton M, Courtney L, Edwards J, Maupin R, Ozersky P, ... ... Waterston RH, et al. Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes Proceedings of the National Academy of Sciences of the United States of America. 97: 1172-1177. PMID 10655503 DOI: 10.1073/pnas.97.3.1172  0.72
2000 McCarter JP, Bird DM, Clifton SW, Waterston RH. Nematode gene sequences, December 2000 update Journal of Nematology. 32: 331-333.  0.72
1999 Marra MA, Kucaba TA, Hillier LW, Waterston RH. High-throughput plasmid DNA purification for 3 cents per sample. Nucleic Acids Research. 27: e37. PMID 10572189  0.72
1999 Hresko MC, Schriefer LA, Shrimankar P, Waterston RH. Myotactin, a novel hypodermal protein involved in muscle-cell adhesion in Caenorhabditis elegans Journal of Cell Biology. 146: 659-672. PMID 10444073 DOI: 10.1083/jcb.146.3.659  0.72
1999 Marra M, Kucaba T, Sekhon M, Hillier L, Martienssen R, Chinwalla A, Crockett J, Fedele J, Grover H, Gund C, McCombie WR, McDonald K, McPherson J, Mudd N, Parnell L, ... ... Waterston R, et al. zA map for sequence analysis of the Arabidopsis thaliana genome. Nature Genetics. 22: 265-70. PMID 10391214 DOI: 10.1038/10327  0.72
Low-probability matches
2019 Packer JS, Zhu Q, Huynh C, Sivaramakrishnan P, Preston E, Dueck H, Stefanik D, Tan K, Trapnell C, Kim J, Waterston RH, Murray JI. A lineage-resolved molecular atlas of embryogenesis at single-cell resolution. Science (New York, N.Y.). PMID 31488706 DOI: 10.1126/science.aax1971  0.24
2019 Warner AD, Gevirtzman L, Hillier LW, Ewing B, Waterston RH. The embryonic transcriptome with tissue, time, and alternative splicing resolution. Genome Research. PMID 31123079 DOI: 10.1101/gr.243394.118  0.24
2017 Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, ... ... Waterston R, et al. The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. PMID 29284660 DOI: 10.1534/genetics.117.300657  0.24
2016 Boeck ME, Huynh C, Gevirtzman L, Thompson OA, Wang G, Kasper DM, Reinke V, Hillier LW, Waterston RH. The time resolved transcriptome of C. elegans. Genome Research. PMID 27531719 DOI: 10.1101/gr.202663.115  0.24
2015 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, ... ... Waterston RH, et al. Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. PMID 26560031 DOI: 10.1038/nature16075  0.24
2017 Konrad A, Thompson O, Waterston RH, Moerman DG, Keightley PD, Bergthorsson U, Katju V. Article: Discoveries. Molecular Biology and Evolution. PMID 28087770 DOI: 10.1093/molbev/msx051  0.12
2003 McCarter JP, Mitreva M, Clifton SW, Bird DM, Waterston RH. Nematode gene sequences: update for december 2003. Journal of Nematology. 35: 465-9. PMID 19262781  0.12
2018 Konrad A, Flibotte S, Taylor J, Waterston RH, Moerman DG, Bergthorsson U, Katju V. Mutational and transcriptional landscape of spontaneous gene duplications and deletions in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29941601 DOI: 10.1073/pnas.1801930115  0.08
2017 Mok CA, Au V, Thompson OA, Edgley ML, Gevirtzman L, Yochem J, Lowry J, Memar N, Wallenfang MR, Rasoloson D, Bowerman B, Schnabel R, Seydoux G, Moerman DG, Waterston RH. MIP-MAP: High Throughput Mapping of Caenorhabditis elegans Temperature-Sensitive Mutants via Molecular Inversion Probes. Genetics. PMID 28827289 DOI: 10.1534/genetics.117.300179  0.08
2013 Mace DL, Weisdepp P, Gevirtzman L, Boyle T, Waterston RH. A high-fidelity cell lineage tracing method for obtaining systematic spatiotemporal gene expression patterns in Caenorhabditis elegans. G3 (Bethesda, Md.). 3: 851-63. PMID 23550142 DOI: 10.1534/g3.113.005918  0.08
2019 Morton EA, Hall AN, Kwan E, Mok C, Queitsch K, Nandakumar V, Stamatoyannopoulos J, Brewer BJ, Waterston R, Queitsch C. Challenges and Approaches to Genotyping Repetitive DNA. G3 (Bethesda, Md.). PMID 31757929 DOI: 10.1534/g3.119.400771  0.01
2019 Shendure J, Balasubramanian S, Church GM, Gilbert W, Rogers J, Schloss JA, Waterston RH. Publisher Correction: DNA sequencing at 40: past, present and future. Nature. PMID 30948799 DOI: 10.1038/s41586-019-1120-8  0.01
2017 Shendure J, Balasubramanian S, Church GM, Gilbert W, Rogers J, Schloss JA, Waterston RH. DNA sequencing at 40: past, present and future. Nature. PMID 29019985 DOI: 10.1038/nature24286  0.01
2017 Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J. Comprehensive single-cell transcriptional profiling of a multicellular organism. Science (New York, N.Y.). 357: 661-667. PMID 28818938 DOI: 10.1126/science.aam8940  0.01
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Waterston R, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/nature13424  0.01
2011 Waterston R. Interaction in online interprofessional education case discussions Journal of Interprofessional Care. 25: 272-279. PMID 21688952 DOI: 10.3109/13561820.2011.566647  0.01
2010 Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, ... ... Waterston RH, et al. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (New York, N.Y.). 330: 1775-87. PMID 21177976 DOI: 10.1126/science.1196914  0.01
2005 Thompson FJ, Mitreva M, Barker GL, Martin J, Waterston RH, Waterson RH, McCarter JP, Viney ME. An expressed sequence tag analysis of the life-cycle of the parasitic nematode Strongyloides ratti. Molecular and Biochemical Parasitology. 142: 32-46. PMID 15907559 DOI: 10.1016/j.molbiopara.2005.03.006  0.01
2005 Hillier LW, Graves TA, Fulton RS, Fulton LA, Pepin KH, Minx P, Wagner-McPherson C, Layman D, Wylie K, Sekhon M, Becker MC, Fewell GA, Delehaunty KD, Miner TL, Nash WE, ... ... Waterston RH, et al. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Nature. 434: 724-31. PMID 15815621 DOI: 10.1038/nature03466  0.01
2005 Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, Muzny D, Platzer M, Howell GR, Burrows C, Bird CP, Frankish A, Lovell FL, Howe KL, Ashurst JL, Fulton RS, ... ... Waterston RH, et al. The DNA sequence of the human X chromosome. Nature. 434: 325-37. PMID 15772651 DOI: 10.1038/nature03440  0.01
2003 Hillier LW, Fulton RS, Fulton LA, Graves TA, Pepin KH, Wagner-McPherson C, Layman D, Maas J, Jaeger S, Walker R, Wylie K, Sekhon M, Becker MC, O'Laughlin MD, Schaller ME, ... ... Waterston RH, et al. The DNA sequence of human chromosome 7. Nature. 424: 157-64. PMID 12853948 DOI: 10.1038/nature01782  0.01
2003 Heilig R, Eckenberg R, Petit JL, Fonknechten N, Da Silva C, Cattolico L, Levy M, Barbe V, de Berardinis V, Ureta-Vidal A, Pelletier E, Vico V, Anthouard V, Rowen L, Madan A, ... ... Waterston R, et al. The DNA sequence and analysis of human chromosome 14. Nature. 421: 601-7. PMID 12508121 DOI: 10.1038/nature01348  0.01
2000 Ryan D, Waterston R. Transforming continuing education materials for on-line learning. Journal of Telemedicine and Telecare. 6: S64-66. PMID 10975107  0.01
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