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Daniel E. Cook - Publications

Affiliations: 
2014-2018 Northwestern University, Evanston, IL 
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, ... ... Cook DE, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x  0.305
2022 Crombie TA, Chikuturudzi C, Cook DE, Andersen EC. An automated approach to quantify chemotaxis index in . Micropublication Biology. 2022. PMID 35647500 DOI: 10.17912/micropub.biology.000567  0.54
2022 Crombie TA, Battlay P, Tanny RE, Evans KS, Buchanan CM, Cook DE, Dilks CM, Stinson LA, Zdraljevic S, Zhang G, Roberto NM, Lee D, Ailion M, Hodgins KA, Andersen EC. Local adaptation and spatiotemporal patterns of genetic diversity revealed by repeated sampling of Caenorhabditis elegans across the Hawaiian Islands. Molecular Ecology. PMID 35167162 DOI: 10.1111/mec.16400  0.791
2021 Gilbert KJ, Zdraljevic S, Cook DE, Cutter AD, Andersen EC, Baer CF. The distribution of mutational effects on fitness in Caenorhabditis elegans inferred from standing genetic variation. Genetics. PMID 34791202 DOI: 10.1093/genetics/iyab166  0.782
2021 Di Bernardo M, Crombie TA, Cook DE, Andersen EC. easyFulcrum: An R package to process and analyze ecological sampling data generated using the Fulcrum mobile application. Plos One. 16: e0254293. PMID 34613959 DOI: 10.1371/journal.pone.0254293  0.545
2021 Lee D, Zdraljevic S, Stevens L, Wang Y, Tanny RE, Crombie TA, Cook DE, Webster AK, Chirakar R, Baugh LR, Sterken MG, Braendle C, Félix MA, Rockman MV, Andersen EC. Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans. Nature Ecology & Evolution. PMID 33820969 DOI: 10.1038/s41559-021-01435-x  0.771
2019 Crombie TA, Zdraljevic S, Cook DE, Tanny RE, Brady SC, Wang Y, Evans KS, Hahnel S, Lee D, Rodriguez BC, Zhang G, van der Zwagg J, Kiontke K, Andersen EC. Deep sampling of Hawaiian reveals high genetic diversity and admixture with global populations. Elife. 8. PMID 31793880 DOI: 10.7554/Elife.50465  0.781
2019 Lee D, Zdraljevic S, Cook DE, Frézal L, Hsu JC, Sterken MG, Riksen JAG, Wang J, Kammenga JE, Braendle C, Félix MA, Schroeder FC, Andersen EC. Selection and gene flow shape niche-associated variation in pheromone response. Nature Ecology & Evolution. PMID 31548647 DOI: 10.1038/S41559-019-0982-3  0.771
2019 Webster AK, Hung A, Moore BT, Guzman R, Jordan JM, Kaplan REW, Hibshman JD, Tanny RE, Cook DE, Andersen E, Baugh LR. Population Selection and Sequencing of Wild Isolates Identifies a Region on Chromosome III Affecting Starvation Resistance. G3 (Bethesda, Md.). PMID 31444297 DOI: 10.1534/G3.119.400617  0.683
2019 Brady SC, Zdraljevic S, Bisaga KW, Tanny RE, Cook DE, Lee D, Wang Y, Andersen EC. A Novel Gene Underlies Bleomycin-Response Variation in . Genetics. PMID 31171655 DOI: 10.1534/Genetics.119.302286  0.775
2019 Kim C, Kim J, Kim S, Cook DE, Evans KS, Andersen EC, Lee J. Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in . Genome Research. PMID 31123081 DOI: 10.1101/Gr.246082.118  0.655
2019 Crombie TA, Zdraljevic S, Cook DE, Tanny RE, Brady SC, Wang Y, Evans KS, Hahnel S, Lee D, Rodriguez BC, Zhang G, Zwagg Jvd, Kiontke K, Andersen EC. Author response: Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations Elife. DOI: 10.7554/Elife.50465.Sa2  0.768
2018 Evans KS, Brady SC, Bloom JS, Tanny RE, Cook DE, Giuliani SE, Hippleheuser SW, Zamanian M, Andersen EC. Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses. Genetics. PMID 30341085 DOI: 10.1534/Genetics.118.301311  0.76
2018 Zamanian M, Cook DE, Zdraljevic S, Brady SC, Lee D, Lee J, Andersen EC. Discovery of genomic intervals that underlie nematode responses to benzimidazoles. Plos Neglected Tropical Diseases. 12: e0006368. PMID 29601575 DOI: 10.1371/Journal.Pntd.0006368  0.751
2017 Zdraljevic S, Strand C, Seidel HS, Cook DE, Doench JG, Andersen EC. Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons. Plos Genetics. 13: e1006891. PMID 28700616 DOI: 10.1371/Journal.Pgen.1006891  0.753
2017 Laricchia KM, Zdraljevic S, Cook DE, Andersen EC. Natural variation in the distribution and abundance of transposable elements across the Caenorhabditis elegans species. Molecular Biology and Evolution. PMID 28486636 DOI: 10.1093/Molbev/Msx155  0.787
2017 Cook DE, Andersen EC. VCF-kit: Assorted utilities for the variant call format. Bioinformatics (Oxford, England). PMID 28093408 DOI: 10.1093/Bioinformatics/Btx011  0.618
2016 Cook DE, Zdraljevic S, Roberts JP, Andersen EC. CeNDR, the Caenorhabditis elegans natural diversity resource. Nucleic Acids Research. PMID 27701074 DOI: 10.1093/Nar/Gkw893  0.771
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