Year |
Citation |
Score |
2020 |
Basan M, Honda T, Christodoulou D, Hörl M, Chang YF, Leoncini E, Mukherjee A, Okano H, Taylor BR, Silverman JM, Sanchez C, Williamson JR, Paulsson J, Hwa T, Sauer U. A universal trade-off between growth and lag in fluctuating environments. Nature. PMID 32669712 DOI: 10.1038/S41586-020-2505-4 |
0.356 |
|
2020 |
Zheng H, Bai Y, Jiang M, Tokuyasu TA, Huang X, Zhong F, Wu Y, Fu X, Kleckner N, Hwa T, Liu C. General quantitative relations linking cell growth and the cell cycle in Escherichia coli. Nature Microbiology. PMID 32424336 DOI: 10.1038/S41564-020-0717-X |
0.332 |
|
2019 |
Cremer J, Honda T, Tang Y, Wong-Ng J, Vergassola M, Hwa T. Chemotaxis as a navigation strategy to boost range expansion. Nature. PMID 31695195 DOI: 10.1038/S41586-019-1733-Y |
0.318 |
|
2019 |
Zhu M, Mori M, Hwa T, Dai X. Disruption of transcription-translation coordination in Escherichia coli leads to premature transcriptional termination. Nature Microbiology. PMID 31451774 DOI: 10.1038/S41564-019-0543-1 |
0.353 |
|
2019 |
Warren MR, Sun H, Yan Y, Cremer J, Li B, Hwa T. Spatiotemporal establishment of dense bacterial colonies growing on hard agar. Elife. 8. PMID 30855227 DOI: 10.7554/Elife.41093 |
0.356 |
|
2018 |
Dai X, Zhu M, Warren M, Balakrishnan R, Okano H, Williamson JR, Fredrick K, Hwa T. Slowdown of Translational Elongation inunder Hyperosmotic Stress. Mbio. 9. PMID 29440576 DOI: 10.1128/Mbio.02375-17 |
0.308 |
|
2017 |
Mori M, Schink S, Erickson DW, Gerland U, Hwa T. Quantifying the benefit of a proteome reserve in fluctuating environments. Nature Communications. 8: 1225. PMID 29089487 DOI: 10.1038/S41467-017-01242-8 |
0.329 |
|
2017 |
Erickson DW, Schink SJ, Patsalo V, Williamson JR, Gerland U, Hwa T. A global resource allocation strategy governs growth transition kinetics of Escherichia coli. Nature. PMID 29072300 DOI: 10.1038/Nature24299 |
0.364 |
|
2017 |
Cremer J, Arnoldini M, Hwa T. Effect of water flow and chemical environment on microbiota growth and composition in the human colon. Proceedings of the National Academy of Sciences of the United States of America. PMID 28588144 DOI: 10.1073/Pnas.1619598114 |
0.304 |
|
2016 |
Dai X, Zhu M, Warren M, Balakrishnan R, Patsalo V, Okano H, Williamson JR, Fredrick K, Wang YP, Hwa T. Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth. Nature Microbiology. 2: 16231. PMID 27941827 DOI: 10.1038/Nmicrobiol.2016.231 |
0.351 |
|
2016 |
Cremer J, Segota I, Yang CY, Arnoldini M, Sauls JT, Zhang Z, Gutierrez E, Groisman A, Hwa T. Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel. Proceedings of the National Academy of Sciences of the United States of America. PMID 27681630 DOI: 10.1073/Pnas.1601306113 |
0.302 |
|
2016 |
Mori M, Hwa T, Martin OC, De Martino A, Marinari E. Constrained Allocation Flux Balance Analysis. Plos Computational Biology. 12: e1004913. PMID 27355325 DOI: 10.1371/Journal.Pcbi.1004913 |
0.336 |
|
2015 |
Basan M, Zhu M, Dai X, Warren M, Sévin D, Wang YP, Hwa T. Inflating bacterial cells by increased protein synthesis. Molecular Systems Biology. 11: 836. PMID 26519362 DOI: 10.15252/Msb.20156178 |
0.316 |
|
2015 |
Hermsen R, Okano H, You C, Werner N, Hwa T. A growth-rate composition formula for the growth of E.coli on co-utilized carbon substrates. Molecular Systems Biology. 11: 801. PMID 25862745 DOI: 10.15252/Msb.20145537 |
0.304 |
|
2015 |
Hui S, Silverman JM, Chen SS, Erickson DW, Basan M, Wang J, Hwa T, Williamson JR. Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria. Molecular Systems Biology. 11: 784. PMID 25678603 DOI: 10.15252/Msb.20145697 |
0.348 |
|
2014 |
Scott M, Klumpp S, Mateescu EM, Hwa T. Emergence of robust growth laws from optimal regulation of ribosome synthesis. Molecular Systems Biology. 10: 747. PMID 25149558 DOI: 10.15252/Msb.20145379 |
0.375 |
|
2014 |
Klumpp S, Hwa T. Bacterial growth: Global effects on gene expression, growth feedback and proteome partition Current Opinion in Biotechnology. 28: 96-102. PMID 24495512 DOI: 10.1016/J.Copbio.2014.01.001 |
0.362 |
|
2013 |
Deris JB, Kim M, Zhang Z, Okano H, Hermsen R, Groisman A, Hwa T. The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science (New York, N.Y.). 342: 1237435. PMID 24288338 DOI: 10.1126/Science.1237435 |
0.75 |
|
2013 |
Deris JB, Kim M, Zhang Z, Okano H, Hermsen R, Groisman A, Hwa T. The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science (New York, N.Y.). 342: 1237435. PMID 24288338 DOI: 10.1126/Science.1237435 |
0.75 |
|
2013 |
Klumpp S, Scott M, Pedersen S, Hwa T. Molecular crowding limits translation and cell growth Proceedings of the National Academy of Sciences of the United States of America. 110: 16754-16759. PMID 24082144 DOI: 10.1073/Pnas.1310377110 |
0.352 |
|
2013 |
You C, Okano H, Hui S, Zhang Z, Kim M, Gunderson CW, Wang YP, Lenz P, Yan D, Hwa T. Coordination of bacterial proteome with metabolism by cyclic AMP signalling. Nature. 500: 301-6. PMID 23925119 DOI: 10.1038/Nature12446 |
0.421 |
|
2013 |
You C, Okano H, Hui S, Zhang Z, Kim M, Gunderson CW, Wang YP, Lenz P, Yan D, Hwa T. Coordination of bacterial proteome with metabolism by cyclic AMP signalling. Nature. 500: 301-6. PMID 23925119 DOI: 10.1038/Nature12446 |
0.421 |
|
2012 |
Klumpp S, Dong J, Hwa T. On Ribosome Load, Codon Bias and Protein Abundance Plos One. 7. PMID 23144899 DOI: 10.1371/Journal.Pone.0048542 |
0.313 |
|
2012 |
Kim M, Zhang Z, Okano H, Yan D, Groisman A, Hwa T. Need-based activation of ammonium uptake in Escherichia coli. Molecular Systems Biology. 8: 616. PMID 23010999 DOI: 10.1038/Msb.2012.46 |
0.444 |
|
2012 |
Hermsen R, Deris JB, Hwa T. On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient Proceedings of the National Academy of Sciences of the United States of America. 109: 10775-10780. PMID 22711808 DOI: 10.1073/Pnas.1117716109 |
0.74 |
|
2012 |
Warren M, Hwa T. The Growth of Bacterial Colonies Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.831 |
0.35 |
|
2011 |
Hermsen R, Erickson DW, Hwa T. Speed, sensitivity, and bistability in Auto-Activating signaling circuits Plos Computational Biology. 7. PMID 22125482 DOI: 10.1371/Journal.Pcbi.1002265 |
0.302 |
|
2011 |
McHale P, Mizutani CM, Kosman D, MacKay DL, Belu M, Hermann A, McGinnis W, Bier E, Hwa T. Gene length may contribute to graded transcriptional responses in the Drosophila embryo. Developmental Biology. 360: 230-40. PMID 21920356 DOI: 10.1016/J.Ydbio.2011.08.016 |
0.314 |
|
2011 |
Hao Y, Zhang ZJ, Erickson DW, Huang M, Huang Y, Li J, Hwa T, Shi H. Quantifying the sequence-function relation in gene silencing by bacterial small RNAs Proceedings of the National Academy of Sciences of the United States of America. 108: 12473-12478. PMID 21742981 DOI: 10.1073/Pnas.1100432108 |
0.311 |
|
2010 |
Hermsen R, Hwa T. Sources and sinks: a stochastic model of evolution in heterogeneous environments. Physical Review Letters. 105: 248104. PMID 21231560 DOI: 10.1103/Physrevlett.105.248104 |
0.312 |
|
2010 |
Scott M, Gunderson CW, Mateescu EM, Zhang Z, Hwa T. Interdependence of cell growth and gene expression: Origins and consequences Science. 330: 1099-1102. PMID 21097934 DOI: 10.1126/Science.1192588 |
0.364 |
|
2010 |
Lunt B, Szurmant H, Procaccini A, Hoch JA, Hwa T, Weigt M. Inference of direct residue contacts in two-component signaling. Methods in Enzymology. 471: 17-41. PMID 20946840 DOI: 10.1016/S0076-6879(10)71002-8 |
0.302 |
|
2010 |
Okano H, Hwa T, Lenz P, Yan D. Reversible adenylylation of glutamine synthetase is dynamically counterbalanced during steady-state growth of Escherichia coli. Journal of Molecular Biology. 404: 522-36. PMID 20887734 DOI: 10.1016/J.Jmb.2010.09.046 |
0.314 |
|
2009 |
Klumpp S, Zhang Z, Hwa T. Growth Rate-Dependent Global Effects on Gene Expression in Bacteria Cell. 139: 1366-1375. PMID 20064380 DOI: 10.1016/J.Cell.2009.12.001 |
0.41 |
|
2009 |
Klumpp S, Hwa T. Traffic patrol in the transcription of ribosomal RNA Rna Biology. 6. PMID 19502817 DOI: 10.4161/Rna.6.4.8952 |
0.313 |
|
2009 |
Gerland U, Hwa T. Evolutionary selection between alternative modes of gene regulation Proceedings of the National Academy of Sciences of the United States of America. 106: 8841-8846. PMID 19470486 DOI: 10.1073/Pnas.0808500106 |
0.323 |
|
2008 |
Klumpp S, Hwa T. Growth-rate-dependent partitioning of RNA polymerases in bacteria Proceedings of the National Academy of Sciences of the United States of America. 105: 20245-20250. PMID 19073937 DOI: 10.1073/Pnas.0804953105 |
0.392 |
|
2008 |
Klumpp S, Hwa T. Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination Proceedings of the National Academy of Sciences of the United States of America. 105: 18159-18164. PMID 19017803 DOI: 10.1073/Pnas.0806084105 |
0.339 |
|
2008 |
Levine E, Hwa T. Small RNAs establish gene expression thresholds. Current Opinion in Microbiology. 11: 574-9. PMID 18935980 DOI: 10.1016/J.Mib.2008.09.016 |
0.312 |
|
2008 |
Levine E, Zhang Z, Kuhlman T, Hwa T. Correction: Quantitative characteristics of gene regulation by small RNA (PLoS Biology (2007) 5, 9, (e229) DOI: 10.1371/journal.pbio.0050229) Plos Biology. 6: 0191. DOI: 10.1371/Journal.Pbio.0060005 |
0.695 |
|
2007 |
Fritz G, Buchler NE, Hwa T, Gerland U. Designing sequential transcription logic: a simple genetic circuit for conditional memory. Systems and Synthetic Biology. 1: 89-98. PMID 19003438 DOI: 10.1007/S11693-007-9006-8 |
0.667 |
|
2007 |
Fritz G, Buchler NE, Hwa T, Gerland U. Designing sequential transcription logic: a simple genetic circuit for conditional memory. Systems and Synthetic Biology. 1: 89-98. PMID 19003438 DOI: 10.1007/S11693-007-9006-8 |
0.667 |
|
2007 |
Levine E, Zhang Z, Kuhlman T, Hwa T. Quantitative characteristics of gene regulation by small RNA. Plos Biology. 5: e229. PMID 17713988 DOI: 10.1371/Journal.Pbio.0050229 |
0.724 |
|
2007 |
White RA, Szurmant H, Hoch JA, Hwa T. Features of Protein-Protein Interactions in Two-Component Signaling Deduced from Genomic Libraries Methods in Enzymology. 422: 75-101. PMID 17628135 DOI: 10.1016/S0076-6879(06)22004-4 |
0.306 |
|
2007 |
Scott M, Hwa T, Ingalls B. Deterministic characterization of stochastic genetic circuits. Proceedings of the National Academy of Sciences of the United States of America. 104: 7402-7. PMID 17446275 DOI: 10.1073/Pnas.0610468104 |
0.306 |
|
2007 |
Kuhlman T, Zhang Z, Saier MH, Hwa T. Combinatorial transcriptional control of the lactose operon of Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 104: 6043-6048. PMID 17376875 DOI: 10.1073/Pnas.0606717104 |
0.714 |
|
2005 |
Buchler NE, Gerland U, Hwa T. Nonlinear protein degradation and the function of genetic circuits. Proceedings of the National Academy of Sciences of the United States of America. 102: 9559-64. PMID 15972813 DOI: 10.1073/Pnas.0409553102 |
0.666 |
|
2005 |
Buchler NE, Gerland U, Hwa T. Nonlinear protein degradation and the function of genetic circuits. Proceedings of the National Academy of Sciences of the United States of America. 102: 9559-64. PMID 15972813 DOI: 10.1073/Pnas.0409553102 |
0.666 |
|
2005 |
Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Kuhlman T, Phillips R. Transcriptional regulation by the numbers: applications. Current Opinion in Genetics & Development. 15: 125-35. PMID 15797195 DOI: 10.1016/J.Gde.2005.02.006 |
0.767 |
|
2005 |
Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Phillips R. Transcriptional regulation by the numbers: models. Current Opinion in Genetics & Development. 15: 116-24. PMID 15797194 DOI: 10.1016/J.Gde.2005.02.007 |
0.697 |
|
2004 |
Gerland U, Bundschuh R, Hwa T. Translocation of structured polynucleotides through nanopores. Physical Biology. 1: 19-26. PMID 16204818 DOI: 10.1088/1478-3967/1/1/002 |
0.535 |
|
2004 |
Peng W, Levine H, Hwa T, Kessler DA. Analytical study of the effect of recombination on evolution via DNA shuffling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 051911. PMID 15244851 DOI: 10.1103/Physreve.69.051911 |
0.613 |
|
2004 |
Gerland U, Bundschuh R, Hwa T. Translocation of structured polynucleotides through nanopores Physical Biology. 1: 19-26. DOI: 10.1088/1478-3967/1/1/002 |
0.429 |
|
2003 |
Gerland U, Bundschuh R, Hwa T. Mechanically probing the folding pathway of single RNA molecules Biophysical Journal. 84: 2831-2840. PMID 12719217 DOI: 10.1016/S0006-3495(03)70012-5 |
0.548 |
|
2003 |
Buchler NE, Gerland U, Hwa T. On schemes of combinatorial transcription logic. Proceedings of the National Academy of Sciences of the United States of America. 100: 5136-41. PMID 12702751 DOI: 10.1073/Pnas.0930314100 |
0.698 |
|
2003 |
Peng W, Gerland U, Hwa T, Levine H. Dynamics of competitive evolution on a smooth landscape. Physical Review Letters. 90: 088103. PMID 12633464 DOI: 10.1103/Physrevlett.90.088103 |
0.616 |
|
2002 |
Gerland U, Hwa T. On the selection and evolution of regulatory DNA motifs Journal of Molecular Evolution. 55: 386-400. PMID 12355260 DOI: 10.1007/S00239-002-2335-Z |
0.305 |
|
2002 |
Yu YK, Bundschuh R, Hwa T. Hybrid alignment: High-performance with universal statistics Bioinformatics. 18: 864-872. PMID 12075022 DOI: 10.1093/Bioinformatics/18.6.864 |
0.523 |
|
2002 |
Bundschuh R, Hwa T. Statistical mechanics of secondary structures formed by random RNA sequences. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 031903. PMID 11909105 DOI: 10.1103/Physreve.65.031903 |
0.541 |
|
2002 |
Bundschuh R, Hwa T. Phrases of the secondary structures of RNA sequences Europhysics Letters. 59: 903-909. DOI: 10.1209/Epl/I2002-00128-3 |
0.534 |
|
2001 |
Gerland U, Bundschuh R, Hwa T. Force-induced denaturation of RNA. Biophysical Journal. 81: 1324-32. PMID 11509348 DOI: 10.1016/S0006-3495(01)75789-X |
0.539 |
|
2001 |
Altschul SF, Bundschuh R, Olsen R, Hwa T. The estimation of statistical parameters for local alignment score distributions. Nucleic Acids Research. 29: 351-61. PMID 11139604 DOI: 10.1093/Nar/29.2.351 |
0.511 |
|
2000 |
Bundschuh R, Hwa T. An analytic study of the phase transition line in local sequence alignment with gaps Discrete Applied Mathematics. 104: 113-142. DOI: 10.1016/S0166-218X(00)00188-8 |
0.517 |
|
1999 |
Olsen R, Bundschuh R, Hwa T. Rapid assessment of extremal statistics for gapped local alignment. Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 211-22. PMID 10786304 |
0.466 |
|
1999 |
Bundschuh R, Hwa T. RNA secondary structure formation: A solvable model of heteropolymer folding Physical Review Letters. 83: 1479-1482. DOI: 10.1103/Physrevlett.83.1479 |
0.492 |
|
1999 |
Bundschuh R, Hwa T. Analytic study of the phase transition line in local sequence alignment with gaps Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 70-76. |
0.446 |
|
1994 |
Hwa T, Kardar M, Paczuski M. Hwa, Kardar, and Paczuski reply. Physical Review Letters. 72: 785. PMID 10056526 DOI: 10.1103/Physrevlett.72.785 |
0.608 |
|
1994 |
Hwa T, Kardar M, Paczuski M. Hwa, Kardar, and Paczuski reply [3] Physical Review Letters. 72: 785. DOI: 10.1103/PhysRevLett.72.785 |
0.578 |
|
1992 |
Paczuski M, Barma M, Majumdar SN, Hwa T. Fluctuations of a nonequililbrium interface. Physical Review Letters. 69: 2735. PMID 10046572 DOI: 10.1103/Physrevlett.69.2735 |
0.509 |
|
1992 |
Hwa T, Kardar M. Avalanches, hydrodynamics, and discharge events in models of sandpiles. Physical Review. A. 45: 7002-7023. PMID 9906772 DOI: 10.1103/Physreva.45.7002 |
0.479 |
|
1992 |
Paczuski M, Barma M, Majumdar SN, Hwa T. Fluctuations of a nonequililbrium interface [2] Physical Review Letters. 69: 2735. DOI: 10.1103/PhysRevLett.69.2735 |
0.466 |
|
1992 |
Wen X, Garland CW, Hwa T, Kardar M, Kokufuta E, Li Y, Orkisz M, Tanaka T. Crumpled and collapsed conformations in graphite oxide membranes Nature. 355: 426-428. DOI: 10.1038/355426A0 |
0.588 |
|
1991 |
Hwa T, Kardar M, Paczuski M. Growth-induced roughening of crystalline facets. Physical Review Letters. 66: 441-444. PMID 10043808 DOI: 10.1103/Physrevlett.66.441 |
0.645 |
|
1991 |
Hwa T, Kokufuta E, Tanaka T. Conformation of graphite oxide membranes in solution. Physical Review. A. 44: R2235-R2238. PMID 9906266 DOI: 10.1103/Physreva.44.R2235 |
0.461 |
|
1991 |
Hwa T, Kardar M, Paczuski M. Growth-induced roughening of crystalline facets Physical Review Letters. 66: 441-444. DOI: 10.1103/PhysRevLett.66.441 |
0.618 |
|
1990 |
Duplantier B, Hwa T, Kardar M. Self-avoiding crumpled manifolds: Perturbative analysis and renormalizability. Physical Review Letters. 64: 2022-2025. PMID 10041557 DOI: 10.1103/Physrevlett.64.2022 |
0.461 |
|
1989 |
Hwa T, Kardar M. Dissipative transport in open systems: An investigation of self-organized criticality. Physical Review Letters. 62: 1813-1816. PMID 10039777 DOI: 10.1103/Physrevlett.62.1813 |
0.484 |
|
1989 |
Medina E, Hwa T, Kardar M, Zhang YC. Burgers equation with correlated noise: Renormalization-group analysis and applications to directed polymers and interface growth. Physical Review. A. 39: 3053-3075. PMID 9901600 DOI: 10.1103/Physreva.39.3053 |
0.604 |
|
1989 |
Hwa T, Kardar M. Fractals and self-organized criticality in dissipative dynamics Physica D: Nonlinear Phenomena. 38: 198-202. DOI: 10.1016/0167-2789(89)90191-7 |
0.492 |
|
1988 |
Hwa T, Kardar M. Evolution of surface patterns on swelling gels. Physical Review Letters. 61: 106-109. PMID 10038705 DOI: 10.1103/Physrevlett.61.106 |
0.445 |
|
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