| Year |
Citation |
Score |
| 2023 |
Zhang L, Li S, Fang X, An H, Zhang X. Genome-wide analysis of LysM gene family members and their expression in response to infection in Octoploid strawberry( × ). Frontiers in Plant Science. 13: 1105591. PMID 36756233 DOI: 10.3389/fpls.2022.1105591 |
0.325 |
|
| 2020 |
Arango-Argoty GA, Guron GKP, Garner E, Riquelme MV, Heath LS, Pruden A, Vikesland PJ, Zhang L. ARGminer: A web platform for crowdsourcing based curation of antibiotic resistance genes. Bioinformatics (Oxford, England). PMID 32058567 DOI: 10.1093/Bioinformatics/Btaa095 |
0.403 |
|
| 2019 |
Gupta S, Arango-Argoty G, Zhang L, Pruden A, Vikesland P. Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm. Microbiome. 7: 123. PMID 31466530 DOI: 10.1186/S40168-019-0735-1 |
0.345 |
|
| 2019 |
Hasan MS, Wu X, Zhang L. Uncovering missed indels by leveraging unmapped reads. Scientific Reports. 9: 11093. PMID 31366961 DOI: 10.1038/S41598-019-47405-Z |
0.386 |
|
| 2019 |
Arango-Argoty GA, Dai D, Pruden A, Vikesland P, Heath LS, Zhang L. NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes. Microbiome. 7: 88. PMID 31174603 DOI: 10.1186/S40168-019-0703-9 |
0.353 |
|
| 2019 |
Tang M, Hasan MS, Zhu H, Zhang L, Wu X. vi-HMM: a novel HMM-based method for sequence variant identification in short-read data. Human Genomics. 13: 9. PMID 30795817 DOI: 10.1186/S40246-019-0194-6 |
0.329 |
|
| 2018 |
Getz EW, Tithi SS, Zhang L, Aylward FO. Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum. Mbio. 9. PMID 30228235 DOI: 10.1128/Mbio.01089-18 |
0.375 |
|
| 2018 |
Oh M, Pruden A, Chen C, Heath LS, Xia K, Zhang L. MetaCompare: A computational pipeline for prioritizing environmental resistome risk. Fems Microbiology Ecology. PMID 29718191 DOI: 10.1093/Femsec/Fiy079 |
0.328 |
|
| 2018 |
Guo S, Pridham KJ, Virbasius CM, He B, Zhang L, Varmark H, Green MR, Sheng Z. A large-scale RNA interference screen identifies genes that regulate autophagy at different stages. Scientific Reports. 8: 2822. PMID 29434216 DOI: 10.1038/S41598-018-21106-5 |
0.321 |
|
| 2018 |
Tran H, Zhu H, Wu X, Kim G, Clarke CR, Larose H, Haak DC, Askew SD, Barney JN, Westwood JH, Zhang L. Identification of Differentially Methylated Sites with Weak Methylation Effects. Genes. 9. PMID 29419727 DOI: 10.3390/Genes9020075 |
0.3 |
|
| 2018 |
Arango-Argoty G, Garner E, Pruden A, Heath LS, Vikesland P, Zhang L. DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data. Microbiome. 6: 23. PMID 29391044 DOI: 10.1186/S40168-018-0401-Z |
0.397 |
|
| 2018 |
Tithi SS, Aylward FO, Jensen RV, Zhang L. FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data. Peerj. 6: e4227. PMID 29340239 DOI: 10.7717/Peerj.4227 |
0.317 |
|
| 2017 |
Vijayan V, Yiu SM, Zhang L. Improving somatic variant identification through integration of genome and exome data. Bmc Genomics. 18: 748. PMID 29513195 DOI: 10.1186/S12864-017-4134-3 |
0.37 |
|
| 2017 |
Hasan MS, Wu X, Watson LT, Zhang L. UPS-indel: a Universal Positioning System for Indels. Scientific Reports. 7: 14106. PMID 29074871 DOI: 10.1038/S41598-017-14400-1 |
0.34 |
|
| 2017 |
Wang M, Firrman J, Zhang L, Arango-Argoty G, Tomasula P, Liu L, Xiao W, Yam K. Apigenin Impacts the Growth of the Gut Microbiota and Alters the Gene Expression of Enterococcus. Molecules (Basel, Switzerland). 22. PMID 28771188 DOI: 10.3390/Molecules22081292 |
0.359 |
|
| 2017 |
Ke L, Luo B, Zhang L, Zhang M, Yu X, Sun J, Sun Y. Differential transcript profiling alters regulatory gene expression during the development of Gossypium arboreum, G.stocksii and somatic hybrids. Scientific Reports. 7: 3120. PMID 28600526 DOI: 10.1038/s41598-017-03431-3 |
0.317 |
|
| 2016 |
Garner E, Wallace JS, Argoty GA, Wilkinson C, Fahrenfeld N, Heath LS, Zhang L, Arabi M, Aga DS, Pruden A. Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes. Scientific Reports. 6: 38432. PMID 27917931 DOI: 10.1038/Srep38432 |
0.327 |
|
| 2016 |
Firrman J, Liu L, Zhang L, Arango Argoty G, Wang M, Tomasula P, Kobori M, Pontious S, Xiao W. The effect of quercetin on genetic expression of the commensal gut microbes Bifidobacterium catenulatum, Enterococcus caccae and Ruminococcus gauvreauii. Anaerobe. PMID 27742572 DOI: 10.1016/J.Anaerobe.2016.10.004 |
0.318 |
|
| 2016 |
Arango-Argoty G, Singh G, Heath LS, Pruden A, Xiao W, Zhang L. MetaStorm: A Public Resource for Customizable Metagenomics Annotation. Plos One. 11: e0162442. PMID 27632579 DOI: 10.1371/Journal.Pone.0162442 |
0.337 |
|
| 2016 |
Hasan MS, Zhang L. SPAI: an interactive platform for indel analysis. Bmc Genomics. 17: 496. PMID 27585593 DOI: 10.1186/S12864-016-2824-X |
0.337 |
|
| 2016 |
Tran H, Wu X, Tithi S, Sun MA, Xie H, Zhang L. A Bayesian Assignment Method for Ambiguous Bisulfite Short Reads. Plos One. 11: e0151826. PMID 27011215 DOI: 10.1371/Journal.Pone.0151826 |
0.36 |
|
| 2016 |
Liu L, Firrman J, Argoty GA, Tomasula P, Kobori M, Zhang L, Xiao W. Genetic Expression Profile Analysis of the Temporal Inhibition of Quercetin and Naringenin on Lactobacillus Rhamnosus GG Journal of Probiotics & Health. 4: 1-10. DOI: 10.4172/2329-8901.1000139 |
0.372 |
|
| 2015 |
Porter J, Sun MA, Xie H, Zhang L. Investigating bisulfite short-read mapping failure with hairpin bisulfite sequencing data. Bmc Genomics. 16: S2. PMID 26576456 DOI: 10.1186/1471-2164-16-S11-S2 |
0.306 |
|
| 2015 |
Hasan MS, Wu X, Zhang L. Performance evaluation of indel calling tools using real short-read data. Human Genomics. 9: 20. PMID 26286629 DOI: 10.1186/S40246-015-0042-2 |
0.359 |
|
| 2015 |
Liu M, Watson LT, Zhang L. Predicting the combined effect of multiple genetic variants. Human Genomics. 9: 18. PMID 26223264 DOI: 10.1186/S40246-015-0040-4 |
0.407 |
|
| 2015 |
Chen W, Zhang L. The pattern of DNA cleavage intensity around indels. Scientific Reports. 5: 8333. PMID 25660536 DOI: 10.1038/Srep08333 |
0.327 |
|
| 2015 |
Chen W, Zhang X, Brooker J, Lin H, Zhang L, Chou KC. PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions. Bioinformatics (Oxford, England). 31: 119-20. PMID 25231908 DOI: 10.1093/Bioinformatics/Btu602 |
0.317 |
|
| 2014 |
Li Z, Wu X, He B, Zhang L. Vindel: a simple pipeline for checking indel redundancy. Bmc Bioinformatics. 15: 359. PMID 25407965 DOI: 10.1186/S12859-014-0359-1 |
0.381 |
|
| 2014 |
Tran H, Porter J, Sun MA, Xie H, Zhang L. Objective and comprehensive evaluation of bisulfite short read mapping tools. Advances in Bioinformatics. 2014: 472045. PMID 24839440 DOI: 10.1155/2014/472045 |
0.318 |
|
| 2014 |
Liu M, Watson LT, Zhang L. Quantitative prediction of the effect of genetic variation using hidden Markov models. Bmc Bioinformatics. 15: 5. PMID 24405700 DOI: 10.1186/1471-2105-15-5 |
0.38 |
|
| 2012 |
Adelman ZN, Anderson MA, Liu M, Zhang L, Myles KM. Sindbis virus induces the production of a novel class of endogenous siRNAs in Aedes aegypti mosquitoes. Insect Molecular Biology. 21: 357-68. PMID 22458920 DOI: 10.1111/J.1365-2583.2012.01141.X |
0.321 |
|
| 2011 |
Lewis SN, Nsoesie E, Weeks C, Qiao D, Zhang L. Prediction of disease and phenotype associations from genome-wide association studies. Plos One. 6: e27175. PMID 22076134 DOI: 10.1371/Journal.Pone.0027175 |
0.312 |
|
| 2011 |
Urgard E, Vooder T, Võsa U, Välk K, Liu M, Luo C, Hoti F, Roosipuu R, Annilo T, Laine J, Frenz CM, Zhang L, Metspalu A. Metagenes associated with survival in non-small cell lung cancer. Cancer Informatics. 10: 175-83. PMID 21695068 DOI: 10.4137/Cin.S7135 |
0.329 |
|
| 2010 |
Beck DC, Jiang H, Zhang L. Elucidating the Evolutionary Relationships among Bos taurus Digestive Organs Using Unigene Expression Data. International Journal of Evolutionary Biology. 2010: 803142. PMID 21350656 DOI: 10.4061/2009/803142 |
0.332 |
|
| 2010 |
Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg Le Ann, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, ... ... Zhang L, et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. Plos Biology. 8. PMID 20838655 DOI: 10.1371/Journal.Pbio.1000475 |
0.462 |
|
| 2010 |
Warren AS, Anandakrishnan R, Zhang L. Functional bias in molecular evolution rate of Arabidopsis thaliana. Bmc Evolutionary Biology. 10: 125. PMID 20433764 DOI: 10.1186/1471-2148-10-125 |
0.416 |
|
| 2010 |
Shi G, Zhang L, Jiang T. MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. Bmc Bioinformatics. 11: 10. PMID 20053291 DOI: 10.1186/1471-2105-11-10 |
0.442 |
|
| 2009 |
Lawson MJ, Jiao J, Fan W, Zhang L. A pattern analysis of gene conversion literature. Comparative and Functional Genomics. 761512. PMID 20148076 DOI: 10.1155/2009/761512 |
0.401 |
|
| 2009 |
Pan D, Zhang L. An atlas of the speed of copy number changes in animal gene families and its implications. Plos One. 4: e7342. PMID 19851465 DOI: 10.1371/Journal.Pone.0007342 |
0.452 |
|
| 2009 |
Lawson MJ, Zhang L. Sexy gene conversions: locating gene conversions on the X-chromosome. Nucleic Acids Research. 37: 4570-9. PMID 19487239 DOI: 10.1093/Nar/Gkp421 |
0.409 |
|
| 2009 |
Pan D, Zhang L. Burst of young retrogenes and independent retrogene formation in mammals. Plos One. 4: e5040. PMID 19325906 DOI: 10.1371/Journal.Pone.0005040 |
0.422 |
|
| 2009 |
Huang W, Wang P, Liu Z, Zhang L. Identifying disease associations via genome-wide association studies. Bmc Bioinformatics. 10: S68. PMID 19208172 DOI: 10.1186/1471-2105-10-S1-S68 |
0.337 |
|
| 2008 |
Pan D, Zhang L. Tandemly arrayed genes in vertebrate genomes. Comparative and Functional Genomics. 545269. PMID 18815629 DOI: 10.1155/2008/545269 |
0.455 |
|
| 2008 |
Sanna CR, Li WH, Zhang L. Overlapping genes in the human and mouse genomes. Bmc Genomics. 9: 169. PMID 18410680 DOI: 10.1186/1471-2164-9-169 |
0.45 |
|
| 2008 |
Zhang L. Adaptive evolution and frequent gene conversion in the brain expressed X-linked gene family in mammals. Biochemical Genetics. 46: 293-311. PMID 18236150 DOI: 10.1007/S10528-008-9148-8 |
0.448 |
|
| 2008 |
Lawson MJ, Zhang L. Housekeeping and tissue-specific genes differ in simple sequence repeats in the 5'-UTR region. Gene. 407: 54-62. PMID 17964742 DOI: 10.1016/J.Gene.2007.09.017 |
0.406 |
|
| 2007 |
Shoja V, Murali TM, Zhang L. Expression divergence of tandemly arrayed genes in human and mouse. Comparative and Functional Genomics. 60964. PMID 18273387 DOI: 10.1155/2007/60964 |
0.415 |
|
| 2007 |
Pan D, Zhang L. Quantifying the major mechanisms of recent gene duplications in the human and mouse genomes: a novel strategy to estimate gene duplication rates. Genome Biology. 8: R158. PMID 17683522 DOI: 10.1186/Gb-2007-8-8-R158 |
0.441 |
|
| 2006 |
Shoja V, Zhang L. A roadmap of tandemly arrayed genes in the genomes of human, mouse, and rat. Molecular Biology and Evolution. 23: 2134-41. PMID 16901985 DOI: 10.1093/Molbev/Msl085 |
0.46 |
|
| 2006 |
Lawson MJ, Zhang L. Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes. Genome Biology. 7: R14. PMID 16507170 DOI: 10.1186/Gb-2006-7-2-R14 |
0.436 |
|
| 2005 |
Zhang L, Li WH. Human SNPs reveal no evidence of frequent positive selection. Molecular Biology and Evolution. 22: 2504-7. PMID 16107590 DOI: 10.1093/Molbev/Msi240 |
0.369 |
|
| 2005 |
Zhang L, Lu HH, Chung WY, Yang J, Li WH. Patterns of segmental duplication in the human genome. Molecular Biology and Evolution. 22: 135-41. PMID 15371527 DOI: 10.1093/Molbev/Msh262 |
0.442 |
|
| 2004 |
Zhang L, Li WH. Mammalian housekeeping genes evolve more slowly than tissue-specific genes. Molecular Biology and Evolution. 21: 236-9. PMID 14595094 DOI: 10.1093/Molbev/Msh010 |
0.424 |
|
| 2003 |
Zhang L, Gaut BS. Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome? Genome Research. 13: 2533-40. PMID 14656961 DOI: 10.1101/Gr.1318503 |
0.615 |
|
| 2002 |
Zhang L, Peek AS, Dunams D, Gaut BS. Population genetics of duplicated disease-defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis). Genetics. 162: 851-60. PMID 12399395 |
0.576 |
|
| 2002 |
Zhang L, Vision TJ, Gaut BS. Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana. Molecular Biology and Evolution. 19: 1464-73. PMID 12200474 DOI: 10.1093/Oxfordjournals.Molbev.A004209 |
0.583 |
|
| 2001 |
Zhang L, Pond SK, Gaut BS. A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa. Journal of Molecular Evolution. 52: 144-56. PMID 11231894 DOI: 10.1007/S002390010143 |
0.581 |
|
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