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Jennifer H. Wisecaver, Ph.D. - Publications

Affiliations: 
2012 Ecology & Evolutionary Biology University of Arizona, Tucson, AZ 
Area:
Evolution and Development Biology, Bioinformatics Biology, Molecular Biology, Genetics
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Eastman KE, Pendleton AL, Shaikh MA, Suttiyut T, Ogas R, Tomko P, Gavelis G, Widhalm JR, Wisecaver JH. A reference genome for the long-term kleptoplast-retaining sea slug Elysia crispata morphotype clarki. G3 (Bethesda, Md.). PMID 37816307 DOI: 10.1093/g3journal/jkad234  0.44
2023 Wisecaver JH, Auber RP, Pendleton AL, Watervoort NF, Fallon TR, Riedling OL, Manning SR, Moore BS, Driscoll WW. Extreme genome diversity and cryptic speciation in a harmful algal-bloom-forming eukaryote. Current Biology : Cb. 33: 2246-2259.e8. PMID 37224809 DOI: 10.1016/j.cub.2023.05.003  0.775
2023 Driscoll WW, Wisecaver JH, Hackett JD, Espinosa NJ, Padway J, Engers JE, Bower JA. Behavioural differences underlie toxicity and predation variation in blooms of Prymnesium parvum. Ecology Letters. PMID 36924044 DOI: 10.1111/ele.14172  0.762
2022 Suttiyut T, Auber RP, Ghaste M, Kane CN, McAdam SAM, Wisecaver JH, Widhalm JR. Integrative analysis of the shikonin metabolic network identifies new gene connections and reveals evolutionary insight into shikonin biosynthesis. Horticulture Research. PMID 35048120 DOI: 10.1093/hr/uhab087  0.429
2021 Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, et al. Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes. The New Phytologist. PMID 34797921 DOI: 10.1111/nph.17873  0.752
2021 Kwon MJ, Steiniger C, Cairns TC, Wisecaver JH, Lind AL, Pohl C, Regner C, Rokas A, Meyer V. Beyond the Biosynthetic Gene Cluster Paradigm: Genome-Wide Coexpression Networks Connect Clustered and Unclustered Transcription Factors to Secondary Metabolic Pathways. Microbiology Spectrum. e0089821. PMID 34523946 DOI: 10.1128/Spectrum.00898-21  0.805
2021 Geng Y, Cai C, McAdam SAM, Banks JA, Wisecaver JH, Zhou Y. A de Novo Transcriptome Assembly of Ceratopteris Richardii Provides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants. Genome Biology and Evolution. PMID 33681974 DOI: 10.1093/gbe/evab042  0.343
2020 Auber RP, Suttiyut T, McCoy RM, Ghaste M, Crook JW, Pendleton AL, Widhalm JR, Wisecaver JH. Hybrid de novo genome assembly of red gromwell (Lithospermum erythrorhizon) reveals evolutionary insight into shikonin biosynthesis. Horticulture Research. 7: 82. PMID 34059629 DOI: 10.1038/s41438-020-0301-9  0.381
2020 DeMarco AG, Milholland KL, Pendleton AL, Whitney JJ, Zhu P, Wesenberg DT, Nambiar M, Pepe A, Paula S, Chmielewski J, Wisecaver JH, Tao WA, Hall MC. Conservation of Cdc14 phosphatase specificity in plant fungal pathogens: implications for antifungal development. Scientific Reports. 10: 12073. PMID 32694511 DOI: 10.1038/S41598-020-68921-3  0.328
2020 Thielen PM, Pendleton AL, Player RA, Bowden KV, Lawton TJ, Wisecaver JH. Reference Genome for the Highly Transformable ME034V. G3 (Bethesda, Md.). PMID 32694197 DOI: 10.1534/G3.120.401345  0.466
2020 Auber RP, Suttiyut T, McCoy RM, Ghaste M, Crook JW, Pendleton AL, Widhalm JR, Wisecaver JH. Hybrid de novo genome assembly of red gromwell () reveals evolutionary insight into shikonin biosynthesis. Horticulture Research. 7: 82. PMID 32528694 DOI: 10.1038/S41438-020-0301-9  0.519
2019 Verster KI, Wisecaver JH, Karageorgi M, Duncan RP, Gloss AD, Armstrong EE, Price DK, Menon AR, Ali ZM, Whiteman NK. Horizontal Transfer of Bacterial Cytolethal Distending Toxin B Genes to Insects. Molecular Biology and Evolution. 36: 2105-2110. PMID 31236589 DOI: 10.1093/Molbev/Msz146  0.499
2019 Gao S, Gold SE, Wisecaver JH, Zhang Y, Guo L, Ma LJ, Rokas A, Glenn AE. Genome-wide analysis of Fusarium verticillioides reveals inter-kingdom contribution of horizontal gene transfer to the expansion of metabolism. Fungal Genetics and Biology : Fg & B. PMID 30953838 DOI: 10.1016/J.Fgb.2019.04.002  0.705
2019 Colle M, Leisner CP, Wai CM, Ou S, Bird KA, Wang J, Wisecaver JH, Yocca AE, Alger EI, Tang H, Xiong Z, Callow P, Ben-Zvi G, Brodt A, Baruch K, et al. Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. Gigascience. PMID 30715294 DOI: 10.1093/Gigascience/Giz012  0.44
2018 Eidem HR, Steenwyk JL, Wisecaver JH, Capra JA, Abbot P, Rokas A. integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth. Bmc Medical Genomics. 11: 107. PMID 30453955 DOI: 10.1186/S12920-018-0426-Y  0.769
2018 Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, et al. Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum. Cell. PMID 30415838 DOI: 10.1016/J.Cell.2018.10.023  0.784
2018 Rokas A, Wisecaver JH, Lind AL. The birth, evolution and death of metabolic gene clusters in fungi. Nature Reviews. Microbiology. PMID 30194403 DOI: 10.1038/S41579-018-0075-3  0.823
2018 Zhang N, Cai G, Price DC, Crouch JA, Gladieux P, Hillman B, Khang CH, LeBrun MH, Lee YH, Luo J, Qiu H, Veltri D, Wisecaver JH, Zhu J, Bhattacharya D. Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi. Scientific Reports. 8: 5862. PMID 29651164 DOI: 10.1038/S41598-018-24301-6  0.493
2018 Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen XX, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P. Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage. Elife. 7. PMID 29648535 DOI: 10.7554/Elife.33034  0.791
2018 Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen X, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P. Author response: Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage Elife. DOI: 10.7554/Elife.33034.033  0.714
2017 Lind AL, Wisecaver JH, Lameiras C, Wiemann P, Palmer JM, Keller NP, Rodrigues F, Goldman GH, Rokas A. Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species. Plos Biology. 15: e2003583. PMID 29149178 DOI: 10.1371/Journal.Pbio.2003583  0.811
2017 Lojek LJ, Farrand AJ, Wisecaver JH, Blaby-Haas CE, Michel BW, Merchant SS, Rokas A, Skaar EP. Chlamydomonas reinhardtii LFO1 Is an IsdG Family Heme Oxygenase. Msphere. 2. PMID 28815214 DOI: 10.1128/mSphere.00176-17  0.439
2017 Ohkura M, Fitak RR, Wisecaver JH, DeBlasio D, Niazi F, Egholm M, Rounsley SD, Kodira CD, Orbach MJ. Genome Sequence of Ophidiomyces ophiodiicola, an Emerging Fungal Pathogen of Snakes. Genome Announcements. 5. PMID 28751397 DOI: 10.1128/Genomea.00677-17  0.381
2017 Wisecaver JH, Borowsky AT, Tzin V, Jander G, Kliebenstein DJ, Rokas A. A Global Co-expression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants. The Plant Cell. PMID 28408660 DOI: 10.1105/Tpc.17.00009  0.654
2016 DeBlasio DF, Wisecaver JH. SICLE: a high-throughput tool for extracting evolutionary relationships from phylogenetic trees. Peerj. 4: e2359. PMID 27635331 DOI: 10.7717/Peerj.2359  0.404
2016 Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, et al. Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535936 DOI: 10.1073/Pnas.1603941113  0.794
2016 Wisecaver JH, Alexander WG, King SB, Todd Hittinger C, Rokas A. Dynamic Evolution of Nitric Oxide Detoxifying Flavohemoglobins, a Family of Single-Protein Metabolic Modules in Bacteria and Eukaryotes. Molecular Biology and Evolution. PMID 27189567 DOI: 10.1093/Molbev/Msw073  0.617
2016 Alexander WG, Wisecaver JH, Rokas A, Hittinger CT. Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035945 DOI: 10.1073/Pnas.1517242113  0.64
2015 Lasek-Nesselquist E, Wisecaver JH, Hackett JD, Johnson MD. Insights into transcriptional changes that accompany organelle sequestration from the stolen nucleus of Mesodinium rubrum. Bmc Genomics. 16: 805. PMID 26475598 DOI: 10.1186/S12864-015-2052-9  0.72
2015 Wisecaver JH, Slot JC, Rokas A. Correction: The Evolution of Fungal Metabolic Pathways. Plos Genetics. 11: e1005449. PMID 26378934 DOI: 10.1371/Journal.Pgen.1005449  0.72
2015 U'Ren JM, Wisecaver JH, Paek AL, Dunn BL, Hurwitz BL. Draft Genome Sequence of the Ale-Fermenting Saccharomyces cerevisiae Strain GSY2239. Genome Announcements. 3. PMID 26205854 DOI: 10.1128/Genomea.00776-15  0.352
2015 Lind AL, Wisecaver JH, Smith TD, Feng X, Calvo AM, Rokas A. Examining the evolution of the regulatory circuit controlling secondary metabolism and development in the fungal genus Aspergillus. Plos Genetics. 11: e1005096. PMID 25786130 DOI: 10.1371/Journal.Pgen.1005096  0.81
2015 Wisecaver JH, Rokas A. Fungal metabolic gene clusters-caravans traveling across genomes and environments. Frontiers in Microbiology. 6: 161. PMID 25784900 DOI: 10.3389/Fmicb.2015.00161  0.708
2015 Elmore MH, McGary KL, Wisecaver JH, Slot JC, Geiser DM, Sink S, O'Donnell K, Rokas A. Clustering of two genes putatively involved in cyanate detoxification evolved recently and independently in multiple fungal lineages. Genome Biology and Evolution. 7: 789-800. PMID 25663439 DOI: 10.1093/Gbe/Evv025  0.789
2014 Wisecaver JH, Slot JC, Rokas A. The evolution of fungal metabolic pathways. Plos Genetics. 10: e1004816. PMID 25474404 DOI: 10.1371/Journal.Pgen.1004816  0.798
2014 Gusev O, Suetsugu Y, Cornette R, Kawashima T, Logacheva MD, Kondrashov AS, Penin AA, Hatanaka R, Kikuta S, Shimura S, Kanamori H, Katayose Y, Matsumoto T, Shagimardanova E, Alexeev D, ... ... Wisecaver J, et al. Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge. Nature Communications. 5: 4784. PMID 25216354 DOI: 10.1038/Ncomms5784  0.546
2014 Wisecaver JH, Hackett JD. The impact of automated filtering of BLAST-determined homologs in the phylogenetic detection of horizontal gene transfer from a transcriptome assembly. Molecular Phylogenetics and Evolution. 71: 184-92. PMID 24321593 DOI: 10.1016/J.Ympev.2013.11.016  0.746
2013 Wisecaver JH, Brosnahan ML, Hackett JD. Horizontal gene transfer is a significant driver of gene innovation in dinoflagellates. Genome Biology and Evolution. 5: 2368-81. PMID 24259313 DOI: 10.1093/Gbe/Evt179  0.758
2013 Hackett JD, Wisecaver JH, Brosnahan ML, Kulis DM, Anderson DM, Bhattacharya D, Plumley FG, Erdner DL. Evolution of saxitoxin synthesis in cyanobacteria and dinoflagellates. Molecular Biology and Evolution. 30: 70-8. PMID 22628533 DOI: 10.1093/Molbev/Mss142  0.741
2012 Molnár I, Lopez D, Wisecaver JH, Devarenne TP, Weiss TL, Pellegrini M, Hackett JD. Bio-crude transcriptomics: gene discovery and metabolic network reconstruction for the biosynthesis of the terpenome of the hydrocarbon oil-producing green alga, Botryococcus braunii race B (Showa). Bmc Genomics. 13: 576. PMID 23110428 DOI: 10.1186/1471-2164-13-576  0.711
2012 Chan CX, Soares MB, Bonaldo MF, Wisecaver JH, Hackett JD, Anderson DM, Erdner DL, Bhattacharya D. ANALYSIS OF ALEXANDRIUM TAMARENSE (DINOPHYCEAE) GENES REVEALS THE COMPLEX EVOLUTIONARY HISTORY OF A MICROBIAL EUKARYOTE(). Journal of Phycology. 48: 1130-1142. PMID 23066170 DOI: 10.1111/J.1529-8817.2012.01194.X  0.727
2011 Wisecaver JH, Hackett JD. Dinoflagellate genome evolution. Annual Review of Microbiology. 65: 369-87. PMID 21682644 DOI: 10.1146/Annurev-Micro-090110-102841  0.749
2010 Wisecaver JH, Hackett JD. Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata. Bmc Genomics. 11: 366. PMID 20537123 DOI: 10.1186/1471-2164-11-366  0.73
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