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Pablo Librado - Publications

Affiliations: 
2009-2014 University of Barcelona, Barcelona, Cataluña, Spain 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Jamieson A, Carmagnini A, Howard-McCombe J, Doherty S, Hirons A, Dimopoulos E, Lin AT, Allen R, Anderson-Whymark H, Barnett R, Batey C, Beglane F, Bowden W, Bratten J, De Cupere B, ... ... Librado P, et al. Limited historical admixture between European wildcats and domestic cats. Current Biology : Cb. 33: 4751-4760.e14. PMID 37935117 DOI: 10.1016/j.cub.2023.08.031  0.41
2022 Librado P, Rozas J. Reconstructing Gene Gains and Losses with BadiRate. Methods in Molecular Biology (Clifton, N.J.). 2569: 213-232. PMID 36083450 DOI: 10.1007/978-1-0716-2691-7_10  0.66
2022 Todd ET, Tonasso-Calvière L, Chauvey L, Schiavinato S, Fages A, Seguin-Orlando A, Clavel P, Khan N, Pérez Pardal L, Patterson Rosa L, Librado P, Ringbauer H, Verdugo M, Southon J, Aury JM, et al. The genomic history and global expansion of domestic donkeys. Science (New York, N.Y.). 377: 1172-1180. PMID 36074859 DOI: 10.1126/science.abo3503  0.356
2020 Librado P, Orlando L. Genomics and the Evolutionary History of Equids. Annual Review of Animal Biosciences. PMID 33197207 DOI: 10.1146/annurev-animal-061220-023118  0.344
2020 Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, ... ... Librado P, et al. Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 123. PMID 32917281 DOI: 10.1186/s12915-020-00864-7  0.731
2020 Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, ... ... Librado P, et al. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 90. PMID 32698880 DOI: 10.1186/S12915-020-00820-5  0.733
2020 Clifton B, Jimenez J, Kimura A, Chahine Z, Librado P, Sanchez-Gracia A, Abbassi M, Carranza F, Chan C, Marchetti M, Zhang W, Shi M, Vu C, Yeh S, Fanti L, et al. Understanding the early evolutionary stages of a tandem D. melanogaster-specific gene family: a structural and functional population study. Molecular Biology and Evolution. PMID 32359138 DOI: 10.1093/Molbev/Msaa109  0.792
2019 Orlando L, Librado P. Origin and Evolution of Deleterious Mutations in Horses. Genes. 10. PMID 31466279 DOI: 10.3390/genes10090649  0.33
2019 Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, ... ... Librado P, et al. The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31387975 DOI: 10.1073/Pnas.1822129116  0.814
2019 Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando A, Leonardi M, McCrory Constantz C, Gamba C, Al-Rasheid KAS, Albizuri S, Alfarhan AH, Allentoft M, Alquraishi S, Anthony D, Baimukhanov N, ... ... Librado P, et al. Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series. Cell. PMID 31056281 DOI: 10.1016/J.Cell.2019.03.049  0.512
2018 Puerma E, Orengo DJ, Cruz F, Gómez-Garrido J, Librado P, Salguero D, Papaceit M, Gut M, Segarra C, Alioto TS, Aguadé M. The high-quality genome sequence of the oceanic island endemic species Drosophila guanche reveals signals of adaptive evolution in genes related to flight and genome stability. Genome Biology and Evolution. PMID 29947749 DOI: 10.1093/Gbe/Evy135  0.68
2018 Renaud G, Petersen B, Seguin-Orlando A, Bertelsen MF, Waller A, Newton R, Paillot R, Bryant N, Vaudin M, Librado P, Orlando L. Improved de novo genomic assembly for the domestic donkey. Science Advances. 4: eaaq0392. PMID 29740610 DOI: 10.1126/sciadv.aaq0392  0.397
2018 Librado P, Orlando L. Detecting Signatures of Positive Selection along Defined Branches of a Population Tree Using LSD. Molecular Biology and Evolution. 35: 1520-1535. PMID 29617830 DOI: 10.1093/molbev/msy053  0.358
2018 Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B, de Villemereuil P, Benjelloun B, Librado P, Biscarini F, Colli L, Barbato M, Zamani W, Alberti A, Engelen S, Stella A, et al. Convergent genomic signatures of domestication in sheep and goats. Nature Communications. 9: 813. PMID 29511174 DOI: 10.1038/S41467-018-03206-Y  0.486
2018 Gaunitz C, Fages A, Hanghøj K, Albrechtsen A, Khan N, Schubert M, Seguin-Orlando A, Owens IJ, Felkel S, Bignon-Lau O, de Barros Damgaard P, Mittnik A, Mohaseb AF, Davoudi H, Alquraishi S, ... ... Librado P, et al. Ancient genomes revisit the ancestry of domestic and Przewalski's horses. Science (New York, N.Y.). PMID 29472442 DOI: 10.1126/Science.Aao3297  0.388
2017 Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Datasets. Molecular Biology and Evolution. PMID 29029172 DOI: 10.1093/Molbev/Msx248  0.746
2017 Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, et al. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nature Ecology & Evolution. 1: 59. PMID 28812732 DOI: 10.1038/S41559-016-0059  0.78
2017 Librado P, Gamba C, Gaunitz C, Der Sarkissian C, Pruvost M, Albrechtsen A, Fages A, Khan N, Schubert M, Jagannathan V, Serres-Armero A, Kuderna LFK, Povolotskaya IS, Seguin-Orlando A, Lepetz S, et al. Ancient genomic changes associated with domestication of the horse. Science (New York, N.Y.). 356: 442-445. PMID 28450643 DOI: 10.1126/Science.Aam5298  0.338
2017 Leonardi M, Librado P, Der Sarkissian C, Schubert M, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Gamba C, Willerslev E, Orlando L. Evolutionary Patterns and Processes: Lessons from Ancient DNA. Systematic Biology. 66: e1-e29. PMID 28173586 DOI: 10.1093/Sysbio/Syw059  0.379
2016 Librado P, Fages A, Gaunitz C, Leonardi M, Wagner S, Khan N, Hanghøj K, Alquraishi SA, Alfarhan AH, Al-Rasheid KA, Der Sarkissian C, Schubert M, Orlando L. The Evolutionary Origin and Genetic Makeup of Domestic Horses. Genetics. 204: 423-434. PMID 27729493 DOI: 10.1534/Genetics.116.194860  0.403
2016 Clifton BD, Librado P, Yeh SD, Solares E, Real D, Jayasekera S, Zhang W, Shi M, Park R, Magie R, Ma HC, Xia XQ, Marco A, Rozas J, Ranz JM. Rapid Functional And Sequence Differentiation of a Tandemly-Repeated Species-Specific Multigene Family in Drosophila. Molecular Biology and Evolution. PMID 27702774 DOI: 10.1093/Molbev/Msw212  0.704
2016 Cruz-Dávalos DI, Llamas B, Gaunitz C, Fages A, Gamba C, Soubrier J, Librado P, Seguin-Orlando A, Pruvost M, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Scheu A, Beneke N, Ludwig A, et al. Experimental conditions improving in solution target enrichment for ancient DNA. Molecular Ecology Resources. PMID 27566552 DOI: 10.1111/1755-0998.12595  0.408
2016 Librado P, Rozas J. Weak polygenic selection drives the rapid adaptation of the chemosensory system: lessons from the upstream regions of the major gene families. Genome Biology and Evolution. PMID 27503297 DOI: 10.1093/Gbe/Evw191  0.706
2015 Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover CA, Lorente-Galdos B, Nedoluzhko A, et al. Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598656 DOI: 10.1073/Pnas.1513696112  0.478
2015 Calvo-Martín JM, Librado P, Aguadé M, Papaceit M, Segarra C. Adaptive selection and coevolution at the proteins of the Polycomb repressive complexes in Drosophila. Heredity. PMID 26486609 DOI: 10.1038/Hdy.2015.91  0.625
2015 Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, et al. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Current Biology : Cb. PMID 26412128 DOI: 10.1016/J.Cub.2015.08.032  0.727
2015 Blanco I, Kuchenbaecker K, Cuadras D, Wang X, Barrowdale D, de Garibay GR, Librado P, Sánchez-Gracia A, Rozas J, Bonifaci N, McGuffog L, Pankratz VS, Islam A, Mateo F, Berenguer A, et al. Assessing associations between the AURKA-HMMR-TPX2-TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers. Plos One. 10: e0120020. PMID 25830658 DOI: 10.1371/Journal.Pone.0120020  0.705
2015 Carretero-Paulet L, Librado P, Chang TH, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA. High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba. Molecular Biology and Evolution. 32: 1284-95. PMID 25637935 DOI: 10.1093/Molbev/Msv020  0.712
2015 Romero-Hernández B, Tedim AP, Sánchez-Herrero JF, Librado P, Rozas J, Muñoz G, Baquero F, Cantón R, Del Campo R. Streptococcus gallolyticus subsp. gallolyticus from human and animal origins: genetic diversity, antimicrobial susceptibility, and characterization of a vancomycin-resistant calf isolate carrying a vanA-Tn1546-like element. Antimicrobial Agents and Chemotherapy. 59: 2006-15. PMID 25605355 DOI: 10.1128/Aac.04083-14  0.783
2015 Carretero-Paulet L, Chang TH, Librado P, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA. Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba. Genome Biology and Evolution. 7: 444-56. PMID 25577200 DOI: 10.1093/Gbe/Evu288  0.725
2014 Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, ... ... Librado P, et al. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science (New York, N.Y.). 345: 1181-4. PMID 25190796 DOI: 10.1126/Science.1255274  0.723
2014 Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biology and Evolution. 6: 1454-65. PMID 24904011 DOI: 10.1093/Gbe/Evu117  0.779
2013 Librado P, Rozas J. Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes. Genome Biology and Evolution. 5: 2096-108. PMID 24148943 DOI: 10.1093/Gbe/Evt158  0.63
2012 Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, ... ... Librado P, et al. The Drosophila melanogaster Genetic Reference Panel. Nature. 482: 173-8. PMID 22318601 DOI: 10.1038/Nature10811  0.678
2012 Yeh SD, Do T, Chan C, Cordova A, Carranza F, Yamamoto EA, Abbassi M, Gandasetiawan KA, Librado P, Damia E, Dimitri P, Rozas J, Hartl DL, Roote J, Ranz JM. Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. Proceedings of the National Academy of Sciences of the United States of America. 109: 2043-8. PMID 22308475 DOI: 10.1073/Pnas.1121327109  0.629
2012 Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A. PopDrowser: the Population Drosophila Browser. Bioinformatics (Oxford, England). 28: 595-6. PMID 22180410 DOI: 10.1093/Bioinformatics/Btr691  0.714
2012 Librado P, Vieira FG, Rozas J. BadiRate: estimating family turnover rates by likelihood-based methods. Bioinformatics (Oxford, England). 28: 279-81. PMID 22080468 DOI: 10.1093/Bioinformatics/Btr623  0.756
2010 Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A. The Drosophila genome variation browser F1000research. 1. DOI: 10.7490/F1000Research.279.1  0.702
2009 Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics (Oxford, England). 25: 1451-2. PMID 19346325 DOI: 10.1093/Bioinformatics/Btp187  0.611
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