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Brian Christopher O'Meara, Ph.D. - Publications

Affiliations: 
University of Tennessee, Knoxville, Knoxville, TN, United States 
Area:
evolution, phylogenetics
Website:
http://www.brianomeara.info
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Folk RA, Gaynor ML, Engle-Wrye NJ, O'Meara BC, Soltis PS, Soltis DE, Guralnick RP, Smith SA, Grady CJ, Okuyama Y. Identifying climatic drivers of hybridization with a new ancestral niche reconstruction method. Systematic Biology. PMID 37073863 DOI: 10.1093/sysbio/syad018  0.318
2023 Boyko JD, O'Meara BC, Beaulieu JM. A novel method for jointly modeling the evolution of discrete and continuous traits. Evolution; International Journal of Organic Evolution. PMID 36723908 DOI: 10.1093/evolut/qpad002  0.727
2022 Beaulieu JM, O'Meara BC. Fossils Do Not Substantially Improve, and May Even Harm, Estimates of Diversification Rate Heterogeneity. Systematic Biology. PMID 35861420 DOI: 10.1093/sysbio/syac049  0.554
2022 Vasconcelos T, O'Meara BC, Beaulieu JM. A flexible method for estimating tip diversification rates across a range of speciation and extinction scenarios. Evolution; International Journal of Organic Evolution. PMID 35661352 DOI: 10.1111/evo.14517  0.558
2022 Vasconcelos T, O'Meara BC, Beaulieu JM. Retiring "Cradles" and "Museums" of Biodiversity. The American Naturalist. 199: 194-205. PMID 35077278 DOI: 10.1086/717412  0.527
2020 Beaulieu JM, O'Meara BC, Gilchrist MA. A spatially-explicit model of stabilizing selection for improving phylogenetic inference. Molecular Biology and Evolution. PMID 33306127 DOI: 10.1093/molbev/msaa318  0.529
2020 Meireles JE, Cavender-Bares J, Townsend PA, Ustin S, Gamon JA, Schweiger AK, Schaepman ME, Asner GP, Martin RE, Singh A, Schrodt F, Chlus A, O'Meara B. Leaf reflectance spectra capture the evolutionary history of seed plants. The New Phytologist. PMID 32579721 DOI: 10.1111/Nph.16771  0.344
2020 Nguyen VD, Nguyen TH, Tayeen ASM, Laughinghouse HD, Sánchez-Reyes LL, Wiggins J, Pontelli E, Mozzherin D, O'Meara B, Stoltzfus A. Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees. Evolutionary Bioinformatics Online. 16: 1176934319899384. PMID 32372858 DOI: 10.1177/1176934319899384  0.753
2019 Beaulieu JM, O'Meara BC. Diversity and skepticism are vital for comparative biology: a response to Donoghue and Edwards (2019). American Journal of Botany. PMID 31050366 DOI: 10.1002/Ajb2.1278  0.505
2018 Beaulieu JM, O'Meara BC, Zaretzki R, Landerer C, Chai J, Gilchrist MA. Population Genetics Based Phylogenetics Under Stabilizing Selection for an Optimal Amino Acid Sequence: A Nested Modeling Approach. Molecular Biology and Evolution. PMID 30521036 DOI: 10.1093/Molbev/Msy222  0.651
2018 Caetano DS, O'Meara BC, Beaulieu JM. Hidden state models improve state-dependent diversification approaches, including biogeographical models. Evolution; International Journal of Organic Evolution. PMID 30226270 DOI: 10.1111/Evo.13602  0.747
2018 Beaulieu JM, O'Meara BC. Can we build it? Yes we can, but should we use it? Assessing the quality and value of a very large phylogeny of campanulid angiosperms. American Journal of Botany. 105: 417-432. PMID 29746717 DOI: 10.1002/Ajb2.1020  0.548
2017 Carstens BC, Morales AE, Jackson N, O'Meara BC. Objective choice of phylogeographic models. Molecular Phylogenetics and Evolution. PMID 28887148 DOI: 10.1016/J.Ympev.2017.08.018  0.396
2016 Jackson ND, Carstens BC, Morales AE, O'Meara BC. Species Delimitation with Gene Flow. Systematic Biology. PMID 28003535 DOI: 10.1093/Sysbio/Syw117  0.362
2016 O'Meara BC, Beaulieu JM. Past, future, and present of state-dependent models of diversification. American Journal of Botany. 103: 792-5. PMID 27208347 DOI: 10.3732/Ajb.1600012  0.541
2016 O'Meara BC, Smith SD, Armbruster WS, Harder LD, Hardy CR, Hileman LC, Hufford L, Litt A, Magallón S, Smith SA, Stevens PF, Fenster CB, Diggle PK. Non-equilibrium dynamics and floral trait interactions shape extant angiosperm diversity. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27147092 DOI: 10.1098/Rspb.2015.2304  0.376
2016 Beaulieu JM, O'Meara BC. Detecting hidden diversification shifts in models of trait-dependent speciation and extinction. Systematic Biology. PMID 27016728 DOI: 10.1093/sysbio/syw022  0.543
2015 Aldrovandi MS, Johnson JE, O'Meara BC, Petersen RH, Hughes KW. The Xeromphalina campanella/kauffmanii complex: species delineation and biogeographical patterns of speciation. Mycologia. PMID 26297781 DOI: 10.3852/15-087  0.308
2015 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Zanne et al. reply. Nature. 521: E6-7. PMID 25993971 DOI: 10.1038/Nature14394  0.456
2015 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Corrigendum: Three keys to the radiation of angiosperms into freezing environments. Nature. 521: 380. PMID 25993966 DOI: 10.1038/Nature14371  0.488
2015 Beaulieu JM, O'Meara BC, Crane P, Donoghue MJ. Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms. Systematic Biology. PMID 25944476 DOI: 10.1093/Sysbio/Syv027  0.635
2015 Beaulieu JM, O'Meara BC. Extinction can be estimated from moderately sized molecular phylogenies. Evolution; International Journal of Organic Evolution. 69: 1036-43. PMID 25639334 DOI: 10.1111/Evo.12614  0.576
2014 Banbury BL, O'Meara BC. Reol: R interface to the Encyclopedia of Life. Ecology and Evolution. 4: 2577-83. PMID 25360287 DOI: 10.1002/Ece3.1109  0.757
2014 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Three keys to the radiation of angiosperms into freezing environments. Nature. 506: 89-92. PMID 24362564 DOI: 10.1038/Nature12872  0.543
2014 Cornwell WK, Westoby M, Falster DS, Fitzjohn RG, O'Meara BC, Pennell MW, McGlinn DJ, Eastman JM, Moles AT, Reich PB, Tank DC, Wright IJ, Aarssen L, Beaulieu JM, Kooyman RM, et al. Functional distinctiveness of major plant lineages Journal of Ecology. 102: 345-356. DOI: 10.1111/1365-2745.12208  0.582
2013 Beaulieu JM, O'Meara BC, Donoghue MJ. Identifying hidden rate changes in the evolution of a binary morphological character: the evolution of plant habit in campanulid angiosperms. Systematic Biology. 62: 725-37. PMID 23676760 DOI: 10.1093/Sysbio/Syt034  0.691
2013 Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158  0.751
2013 Soltis DE, Mort ME, Latvis M, Mavrodiev EV, O'Meara BC, Soltis PS, Burleigh JG, Rubio de Casas R. Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach. American Journal of Botany. 100: 916-29. PMID 23629845 DOI: 10.3732/Ajb.1300044  0.307
2013 Darrin Hulsey C, Keck BP, Alamillo H, O'Meara BC. Mitochondrial genome primers for Lake Malawi cichlids. Molecular Ecology Resources. 13: 347-53. PMID 23347464 DOI: 10.1111/1755-0998.12066  0.72
2012 Stoltzfus A, O'Meara B, Whitacre J, Mounce R, Gillespie EL, Kumar S, Rosauer DF, Vos RA. Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis. Bmc Research Notes. 5: 574. PMID 23088596 DOI: 10.1186/1756-0500-5-574  0.357
2012 Beaulieu JM, Jhwueng DC, Boettiger C, O'Meara BC. Modeling stabilizing selection: expanding the Ornstein-Uhlenbeck model of adaptive evolution. Evolution; International Journal of Organic Evolution. 66: 2369-83. PMID 22834738 DOI: 10.1111/J.1558-5646.2012.01619.X  0.537
2012 O'Meara BC. Evolutionary inferences from phylogenies: A review of methods Annual Review of Ecology, Evolution, and Systematics. 43: 267-285. DOI: 10.1146/Annurev-Ecolsys-110411-160331  0.392
2011 Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, et al. The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science. 2: 34. PMID 22645531 DOI: 10.3389/Fpls.2011.00034  0.729
2011 Stoltzfus A, O'Meara B, Whitacre J, Mounce R, Rosauer D, Vos R. Publishing re-usable phylogenetic trees, in theory and practice Nature Precedings. DOI: 10.1038/Npre.2011.6048.1  0.391
2010 O'Meara BC. New heuristic methods for joint species delimitation and species tree inference. Systematic Biology. 59: 59-73. PMID 20525620 DOI: 10.1093/Sysbio/Syp077  0.385
2009 Smith SA, O'Meara BC. Morphogenera, monophyly, and macroevolution. Proceedings of the National Academy of Sciences of the United States of America. 106: E97-8; author reply . PMID 19805242 DOI: 10.1073/Pnas.0906918106  0.344
2009 Collar DC, O'Meara BC, Wainwright PC, Near TJ. Piscivory limits diversification of feeding morphology in centrarchid fishes. Evolution; International Journal of Organic Evolution. 63: 1557-73. PMID 19154390 DOI: 10.1111/J.1558-5646.2009.00626.X  0.374
2008 O'Meara BC. Using Trees: Myrmecocystus Phylogeny and Character Evolution and New Methods for Investigating Trait Evolution and Species Delimitation (PhD Dissertation) Nature Precedings. 1-1. DOI: 10.1038/Npre.2008.2261.1  0.448
2008 O'Meara B, Alfaro M, Bell C, Bolker B, Butler M, Cowan P, Vienne Dd, Desper R, Felsenstein J, Harmon L, Heibl C, Hipp A, Hunt G, Jombart T, Kembel S, et al. Comparative methods in R hackathon Nature Precedings. DOI: 10.1038/Npre.2008.2126.1  0.699
2007 McBride CS, Arguello JR, O'Meara BC. Five Drosophila genomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily. Genetics. 177: 1395-416. PMID 18039874 DOI: 10.1534/Genetics.107.078683  0.601
2006 O'Meara BC, Ané C, Sanderson MJ, Wainwright PC. Testing for different rates of continuous trait evolution using likelihood. Evolution; International Journal of Organic Evolution. 60: 922-33. PMID 16817533 DOI: 10.1554/05-130.1  0.557
2004 Driskell AC, Ané C, Burleigh JG, McMahon MM, O'meara BC, Sanderson MJ. Prospects for building the tree of life from large sequence databases. Science (New York, N.Y.). 306: 1172-4. PMID 15539599 DOI: 10.1126/Science.1102036  0.565
2001 Farrell BD, Sequeira AS, O'Meara BC, Normark BB, Chung JH, Jordal BH. The evolution of agriculture in beetles (Curculionidae: Scolytinae and Platypodinae). Evolution; International Journal of Organic Evolution. 55: 2011-27. PMID 11761062 DOI: 10.1111/J.0014-3820.2001.Tb01318.X  0.643
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