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Daniel B. Forger, Ph.D. - Publications

Affiliations: 
2003 New York University, New York, NY, United States 
Area:
Mathematics, Molecular Biology
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55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Tyler J, Forger D, Kim J. Inferring causality in biological oscillators. Bioinformatics (Oxford, England). PMID 34463706 DOI: 10.1093/bioinformatics/btab623  0.339
2021 Huang Y, Mayer C, Cheng P, Siddula A, Burgess HJ, Drake C, Goldstein C, Walch O, Forger DB. Predicting circadian phase across populations: a comparison of mathematical models and wearable devices. Sleep. PMID 34013347 DOI: 10.1093/sleep/zsab126  0.351
2020 Hannay KM, Forger DB, Booth V. Seasonality and light phase-resetting in the mammalian circadian rhythm. Scientific Reports. 10: 19506. PMID 33177530 DOI: 10.1038/s41598-020-74002-2  0.33
2020 Cheng P, Walch O, Huang Y, Mayer C, Sagong C, Cuamatzi Castelan A, Burgess HJ, Roth T, Forger DB, Drake CL. Predicting circadian misalignment with wearable technology: Validation of wrist-worn actigraphy and photometry in night shift workers. Sleep. PMID 32918087 DOI: 10.1093/Sleep/Zsaa180  0.423
2019 Hannay KM, Booth V, Forger DB. Macroscopic Models for Human Circadian Rhythms. Journal of Biological Rhythms. 748730419878298. PMID 31617438 DOI: 10.1177/0748730419878298  0.478
2018 Hannay KM, Forger DB, Booth V. Macroscopic models for networks of coupled biological oscillators. Science Advances. 4: e1701047. PMID 30083596 DOI: 10.1126/Sciadv.1701047  0.43
2018 Narasimamurthy R, Hunt SR, Lu Y, Fustin JM, Okamura H, Partch CL, Forger DB, Kim JK, Virshup DM. CK1δ/ε protein kinase primes the PER2 circadian phosphoswitch. Proceedings of the National Academy of Sciences of the United States of America. PMID 29784789 DOI: 10.1073/Pnas.1721076115  0.359
2017 Stinchcombe AR, Mouland JW, Wong KY, Lucas RJ, Forger DB. Multiplexing Visual Signals in the Suprachiasmatic Nuclei. Cell Reports. 21: 1418-1425. PMID 29117548 DOI: 10.1016/J.Celrep.2017.10.045  0.36
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Forger DB, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.322
2017 Mouland JW, Stinchcombe AR, Forger DB, Brown TM, Lucas RJ. Responses to Spatial Contrast in the Mouse Suprachiasmatic Nuclei. Current Biology : Cb. PMID 28528901 DOI: 10.1016/J.Cub.2017.04.039  0.353
2016 Paul JR, DeWoskin D, McMeekin LJ, Cowell RM, Forger DB, Gamble KL. Regulation of persistent sodium currents by glycogen synthase kinase 3 encodes daily rhythms of neuronal excitability. Nature Communications. 7: 13470. PMID 27841351 DOI: 10.1038/Ncomms13470  0.405
2016 Shlizerman E, Phillips-Portillo J, Forger DB, Reppert SM. Neural Integration Underlying a Time-Compensated Sun Compass in the Migratory Monarch Butterfly. Cell Reports. PMID 27149852 DOI: 10.1016/J.Celrep.2016.03.057  0.395
2016 Stinchcombe AR, Forger DB. An efficient method for simulation of noisy coupled multi-dimensional oscillators Journal of Computational Physics. 321: 932-946. DOI: 10.1016/J.Jcp.2016.05.025  0.303
2015 Zhou M, Kim JK, Eng GW, Forger DB, Virshup DM. A Period2 Phosphoswitch Regulates and Temperature Compensates Circadian Period. Molecular Cell. 60: 77-88. PMID 26431025 DOI: 10.1016/J.Molcel.2015.08.022  0.44
2015 Hannay KM, Booth V, Forger DB. Collective phase response curves for heterogeneous coupled oscillators. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 022923. PMID 26382491 DOI: 10.1103/Physreve.92.022923  0.393
2015 DeWoskin D, Myung J, Belle MD, Piggins HD, Takumi T, Forger DB. Distinct roles for GABA across multiple timescales in mammalian circadian timekeeping. Proceedings of the National Academy of Sciences of the United States of America. 112: E3911-9. PMID 26130805 DOI: 10.1073/Pnas.1420753112  0.581
2015 Myung J, Hong S, DeWoskin D, De Schutter E, Forger DB, Takumi T. GABA-mediated repulsive coupling between circadian clock neurons in the SCN encodes seasonal time. Proceedings of the National Academy of Sciences of the United States of America. PMID 26130804 DOI: 10.1073/Pnas.1421200112  0.6
2015 Boďová K, Paydarfar D, Forger DB. Characterizing spiking in noisy type II neurons. Journal of Theoretical Biology. 365: 40-54. PMID 25311908 DOI: 10.1016/J.Jtbi.2014.09.041  0.387
2014 DeWoskin D, Geng W, Stinchcombe AR, Forger DB. It is not the parts, but how they interact that determines the behaviour of circadian rhythms across scales and organisms. Interface Focus. 4: 20130076. PMID 24904739 DOI: 10.1098/Rsfs.2013.0076  0.456
2014 Goriki A, Hatanaka F, Myung J, Kim JK, Yoritaka T, Tanoue S, Abe T, Kiyonari H, Fujimoto K, Kato Y, Todo T, Matsubara A, Forger D, Takumi T. A novel protein, CHRONO, functions as a core component of the mammalian circadian clock. Plos Biology. 12: e1001839. PMID 24736997 DOI: 10.1371/Journal.Pbio.1001839  0.612
2014 Serkh K, Forger DB. Optimal schedules of light exposure for rapidly correcting circadian misalignment. Plos Computational Biology. 10: e1003523. PMID 24722195 DOI: 10.1371/Journal.Pcbi.1003523  0.402
2013 Diekman CO, Belle MD, Irwin RP, Allen CN, Piggins HD, Forger DB. Causes and consequences of hyperexcitation in central clock neurons. Plos Computational Biology. 9: e1003196. PMID 23990770 DOI: 10.1371/Journal.Pcbi.1003196  0.439
2013 Kim JK, Forger DB, Marconi M, Wood D, Doran A, Wager T, Chang C, Walton KM. Modeling and validating chronic pharmacological manipulation of circadian rhythms. Cpt: Pharmacometrics & Systems Pharmacology. 2: e57. PMID 23863866 DOI: 10.1038/psp.2013.34  0.343
2013 Fotiadis P, Forger DB. Modeling the effects of the circadian clock on cardiac electrophysiology. Journal of Biological Rhythms. 28: 69-78. PMID 23382593 DOI: 10.1177/0748730412469499  0.409
2012 Kim JK, Forger DB. A mechanism for robust circadian timekeeping via stoichiometric balance. Molecular Systems Biology. 8: 630. PMID 23212247 DOI: 10.1038/Msb.2012.62  0.513
2012 Clay JR, Forger DB, Paydarfar D. Ionic mechanism underlying optimal stimuli for neuronal excitation: role of Na+ channel inactivation. Plos One. 7: e45983. PMID 23049913 DOI: 10.1371/Journal.Pone.0045983  0.313
2012 Kim JK, Forger DB. On the existence and uniqueness of biological clock models matching experimental data Siam Journal On Applied Mathematics. 72: 1842-1855. DOI: 10.1137/120867809  0.39
2011 Fleshner M, Booth V, Forger DB, Diniz Behn CG. Circadian regulation of sleep-wake behaviour in nocturnal rats requires multiple signals from suprachiasmatic nucleus. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 369: 3855-83. PMID 21893532 DOI: 10.1098/Rsta.2011.0085  0.356
2011 Forger DB, Paydarfar D, Clay JR. Optimal stimulus shapes for neuronal excitation. Plos Computational Biology. 7: e1002089. PMID 21760759 DOI: 10.1371/Journal.Pcbi.1002089  0.321
2011 Forger DB. Signal processing in cellular clocks. Proceedings of the National Academy of Sciences of the United States of America. 108: 4281-5. PMID 21368179 DOI: 10.1073/Pnas.1004720108  0.365
2010 Ko CH, Yamada YR, Welsh DK, Buhr ED, Liu AC, Zhang EE, Ralph MR, Kay SA, Forger DB, Takahashi JS. Emergence of noise-induced oscillations in the central circadian pacemaker. Plos Biology. 8: e1000513. PMID 20967239 DOI: 10.1371/Journal.Pbio.1000513  0.475
2010 Yamada YR, Forger DB. Multiscale complexity in the mammalian circadian clock Current Opinion in Genetics and Development. 20: 626-633. PMID 20934868 DOI: 10.1016/J.Gde.2010.09.006  0.366
2010 Chang DE, Leung S, Atkinson MR, Reifler A, Forger D, Ninfa AJ. Building biological memory by linking positive feedback loops. Proceedings of the National Academy of Sciences of the United States of America. 107: 175-80. PMID 20018658 DOI: 10.1073/Pnas.0908314107  0.317
2009 Belle MD, Diekman CO, Forger DB, Piggins HD. Daily electrical silencing in the mammalian circadian clock. Science (New York, N.Y.). 326: 281-4. PMID 19815775 DOI: 10.1126/Science.1169657  0.379
2009 Diekman CO, Forger DB. Clustering predicted by an electrophysiological model of the suprachiasmatic nucleus. Journal of Biological Rhythms. 24: 322-33. PMID 19625734 DOI: 10.1177/0748730409337601  0.422
2009 Dean DA, Forger DB, Klerman EB. Taking the lag out of jet lag through model-based schedule design. Plos Computational Biology. 5: e1000418. PMID 19543382 DOI: 10.1371/Journal.Pcbi.1000418  0.345
2009 Ninfa AJ, Atkinson MR, Forger D, Atkins S, Arps D, Selinsky S, Court D, Perry N, Mayo AE. A synthetic biology approach to understanding biological oscillations: Developing a genetic oscillator for Escherichia coli Bacterial Circadian Programs. 301-329. DOI: 10.1007/978-3-540-88431-6_17  0.333
2008 Conrad E, Mayo AE, Ninfa AJ, Forger DB. Rate constants rather than biochemical mechanism determine behaviour of genetic clocks. Journal of the Royal Society, Interface / the Royal Society. 5: S9-15. PMID 18426770 DOI: 10.1098/Rsif.2008.0046.Focus  0.355
2007 Virshup DM, Eide EJ, Forger DB, Gallego M, Harnish EV. Reversible protein phosphorylation regulates circadian rhythms. Cold Spring Harbor Symposia On Quantitative Biology. 72: 413-20. PMID 18419299 DOI: 10.1101/Sqb.2007.72.048  0.445
2007 Sim CK, Forger DB. Modeling the electrophysiology of suprachiasmatic nucleus neurons. Journal of Biological Rhythms. 22: 445-53. PMID 17876065 DOI: 10.1177/0748730407306041  0.385
2007 Forger D, Gonze D, Virshup D, Welsh DK. Beyond intuitive modeling: combining biophysical models with innovative experiments to move the circadian clock field forward. Journal of Biological Rhythms. 22: 200-10. PMID 17517910 DOI: 10.1177/0748730407301823  0.47
2007 Forger D, Larkin W. Introduction to the Special Section on Modeling Rhythms, Sleep, and Performance Journal of Biological Rhythms. 22: 199-199. DOI: 10.1177/0748730407301824  0.307
2006 Paydarfar D, Forger DB, Clay JR. Noisy inputs and the induction of on-off switching behavior in a neuronal pacemaker. Journal of Neurophysiology. 96: 3338-48. PMID 16956993 DOI: 10.1152/Jn.00486.2006  0.352
2006 Gallego M, Eide EJ, Woolf MF, Virshup DM, Forger DB. An opposite role for tau in circadian rhythms revealed by mathematical modeling. Proceedings of the National Academy of Sciences of the United States of America. 103: 10618-23. PMID 16818876 DOI: 10.1073/Pnas.0604511103  0.405
2005 Forger D, Drapeau M, Collins B, Blau J. A new model for circadian clock research? Molecular Systems Biology. 1: 2005.0014. PMID 16729049 DOI: 10.1038/Msb4100019  0.406
2005 Indic P, Forger DB, St Hilaire MA, Dean DA, Brown EN, Kronauer RE, Klerman EB, Jewett ME. Comparison of amplitude recovery dynamics of two limit cycle oscillator models of the human circadian pacemaker. Chronobiology International. 22: 613-29. PMID 16147894 DOI: 10.1080/07420520500180371  0.464
2005 Forger DB, Peskin CS. Stochastic simulation of the mammalian circadian clock. Proceedings of the National Academy of Sciences of the United States of America. 102: 321-4. PMID 15626756 DOI: 10.1073/Pnas.0408465102  0.629
2004 Forger DB, Peskin CS. Model based conjectures on mammalian clock controversies. Journal of Theoretical Biology. 230: 533-9. PMID 15363674 DOI: 10.1016/J.Jtbi.2004.04.041  0.655
2004 Forger DB, Paydarfar D. Starting, stopping, and resetting biological oscillators: in search of optimum perturbations. Journal of Theoretical Biology. 230: 521-32. PMID 15363673 DOI: 10.1016/J.Jtbi.2004.04.043  0.425
2003 Forger DB, Dean DA, Gurdziel K, Leloup JC, Lee C, Von Gall C, Etchegaray JP, Kronauer RE, Goldbeter A, Peskin CS, Jewett ME, Weaver DR. Development and validation of computational models for mammalian circadian oscillators. Omics : a Journal of Integrative Biology. 7: 387-400. PMID 14683611 DOI: 10.1089/153623103322637698  0.665
2003 Forger DB, Peskin CS. A detailed predictive model of the mammalian circadian clock. Proceedings of the National Academy of Sciences of the United States of America. 100: 14806-11. PMID 14657377 DOI: 10.1073/Pnas.2036281100  0.64
2002 Forger DB, Kronauer RE. Reconciling mathematical models of biological clocks by averaging on approximate manifolds Siam Journal On Applied Mathematics. 62: 1281-1296. DOI: 10.1137/S0036139900373587  0.434
1999 Forger DB, Jewett ME, Kronauer RE. A simpler model of the human circadian pacemaker. Journal of Biological Rhythms. 14: 532-7. PMID 10643750 DOI: 10.1177/074873099129000867  0.46
1999 Kronauer RE, Forger DB, Jewett ME. Quantifying human circadian pacemaker response to brief, extended, and repeated light stimuli over the phototopic range. Journal of Biological Rhythms. 14: 500-15. PMID 10643747 DOI: 10.1177/074873049901400609  0.422
1999 Jewett ME, Forger DB, Kronauer RE. Revised limit cycle oscillator model of human circadian pacemaker. Journal of Biological Rhythms. 14: 493-9. PMID 10643746 DOI: 10.1177/074873049901400608  0.481
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