| Year |
Citation |
Score |
| 2020 |
Juárez-Saldivar A, Schroeder M, Salentin S, Haupt VJ, Saavedra E, Vázquez C, Reyes-Espinosa F, Herrera-Mayorga V, Villalobos-Rocha JC, García-Pérez CA, Campillo NE, Rivera G. Computational Drug Repositioning for Chagas Disease Using Protein-Ligand Interaction Profiling. International Journal of Molecular Sciences. 21. PMID 32560043 DOI: 10.3390/Ijms21124270 |
0.332 |
|
| 2020 |
Adasme MF, Parisi D, Van Belle K, Salentin S, Haupt VJ, Jennings GS, Heinrich JC, Herman J, Sprangers B, Louat T, Moreau Y, Schroeder M. Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor. Plos One. 15: e0233089. PMID 32459810 DOI: 10.1371/Journal.Pone.0233089 |
0.312 |
|
| 2020 |
Adasme MF, Parisi D, Sveshnikova A, Schroeder M. Structure-based drug repositioning: Potential and limits. Seminars in Cancer Biology. PMID 32032699 DOI: 10.1016/J.Semcancer.2020.01.010 |
0.304 |
|
| 2019 |
Bittrich S, Schroeder M, Labudde D. StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map. Scientific Reports. 9: 18517. PMID 31811259 DOI: 10.1038/S41598-019-55047-4 |
0.303 |
|
| 2018 |
Bittrich S, Schroeder M, Labudde D. Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases. Plos One. 13: e0206369. PMID 30376559 DOI: 10.1371/Journal.Pone.0206369 |
0.309 |
|
| 2018 |
Bonnardel F, Mariethoz J, Salentin S, Robin X, Schroeder M, Perez S, Lisacek F, Imberty A. UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. Nucleic Acids Research. PMID 30239928 DOI: 10.1093/Nar/Gky832 |
0.344 |
|
| 2017 |
Salentin S, Adasme MF, Heinrich JC, Haupt VJ, Daminelli S, Zhang Y, Schroeder M. From malaria to cancer: Computational drug repositioning of amodiaquine using PLIP interaction patterns. Scientific Reports. 7: 11401. PMID 28900272 DOI: 10.1038/S41598-017-11924-4 |
0.326 |
|
| 2017 |
Durán C, Daminelli S, Thomas JM, Haupt VJ, Schroeder M, Cannistraci CV. Pioneering topological methods for network-based drug-target prediction by exploiting a brain-network self-organization theory. Briefings in Bioinformatics. PMID 28453640 DOI: 10.1093/Bib/Bbx041 |
0.342 |
|
| 2016 |
Štular T, Lešnik S, Rožman K, Schink J, Zdouc M, Ghysels A, Liu F, Aldrich CC, Haupt VJ, Salentin S, Daminelli S, Schroeder M, Langer T, Gobec S, Janežič D, et al. Discovery of Mycobacterium tuberculosis InhA Inhibitors by Binding Sites Comparison and Ligands Prediction. Journal of Medicinal Chemistry. PMID 27936766 DOI: 10.1021/Acs.Jmedchem.6B01277 |
0.321 |
|
| 2016 |
Joachim Haupt V, Uvalle JE, Salentin S, Daminelli S, Leonhardt F, Konc J, Schroeder M. Computational Drug Repositioning by Target Hopping: A Use Case in Chagas Disease. Current Pharmaceutical Design. PMID 26873186 DOI: 10.2174/1381612822666160224143008 |
0.304 |
|
| 2016 |
Roy J, Winter C, Schroeder M. Meta-analysis of Cancer Gene Profiling Data. Methods in Molecular Biology (Clifton, N.J.). 1381: 211-22. PMID 26667463 DOI: 10.1007/978-1-4939-3204-7_12 |
0.318 |
|
| 2015 |
Isik Z, Baldow C, Cannistraci CV, Schroeder M. Drug target prioritization by perturbed gene expression and network information. Scientific Reports. 5: 17417. PMID 26615774 DOI: 10.1038/Srep17417 |
0.338 |
|
| 2015 |
Petrova A, Ma Y, Tsatsaronis G, Kissa M, Distel F, Baader F, Schroeder M. Formalizing biomedical concepts from textual definitions. Journal of Biomedical Semantics. 6: 22. PMID 25949785 DOI: 10.1186/S13326-015-0015-3 |
0.303 |
|
| 2015 |
Salentin S, Schreiber S, Haupt VJ, Adasme MF, Schroeder M. PLIP: fully automated protein-ligand interaction profiler. Nucleic Acids Research. 43: W443-7. PMID 25873628 DOI: 10.1093/Nar/Gkv315 |
0.344 |
|
| 2015 |
Kissa M, Tsatsaronis G, Schroeder M. Prediction of drug gene associations via ontological profile similarity with application to drug repositioning. Methods (San Diego, Calif.). 74: 71-82. PMID 25498216 DOI: 10.1016/J.Ymeth.2014.11.017 |
0.323 |
|
| 2014 |
Salentin S, Haupt VJ, Daminelli S, Schroeder M. Polypharmacology rescored: protein-ligand interaction profiles for remote binding site similarity assessment. Progress in Biophysics and Molecular Biology. 116: 174-86. PMID 24923864 DOI: 10.1016/J.Pbiomolbio.2014.05.006 |
0.358 |
|
| 2014 |
Roy J, Winter C, Isik Z, Schroeder M. Network information improves cancer outcome prediction. Briefings in Bioinformatics. 15: 612-25. PMID 23255167 DOI: 10.1093/Bib/Bbs083 |
0.34 |
|
| 2013 |
Haupt VJ, Daminelli S, Schroeder M. Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key. Plos One. 8: e65894. PMID 23805191 DOI: 10.1371/Journal.Pone.0065894 |
0.323 |
|
| 2013 |
Eisinger D, Tsatsaronis G, Bundschus M, Wieneke U, Schroeder M. Automated Patent Categorization and Guided Patent Search using IPC as Inspired by MeSH and PubMed. Journal of Biomedical Semantics. 4: S3. PMID 23734562 DOI: 10.1186/2041-1480-4-S1-S3 |
0.32 |
|
| 2012 |
Royer L, Reimann M, Stewart AF, Schroeder M. Network compression as a quality measure for protein interaction networks. Plos One. 7: e35729. PMID 22719828 DOI: 10.1371/Journal.Pone.0035729 |
0.32 |
|
| 2012 |
Fabian G, Wächter T, Schroeder M. Extending ontologies by finding siblings using set expansion techniques. Bioinformatics (Oxford, England). 28: i292-300. PMID 22689774 DOI: 10.1093/Bioinformatics/Bts215 |
0.34 |
|
| 2012 |
Winter C, Henschel A, Tuukkanen A, Schroeder M. Protein interactions in 3D: from interface evolution to drug discovery. Journal of Structural Biology. 179: 347-58. PMID 22595401 DOI: 10.1016/J.Jsb.2012.04.009 |
0.356 |
|
| 2012 |
Tsatsaronis G, Macari N, Torge S, Dietze H, Schroeder M. A Maximum-Entropy approach for accurate document annotation in the biomedical domain. Journal of Biomedical Semantics. 3: S2. PMID 22541593 DOI: 10.1186/2041-1480-3-S1-S2 |
0.319 |
|
| 2012 |
Daminelli S, Haupt VJ, Reimann M, Schroeder M. Drug repositioning through incomplete bi-cliques in an integrated drug-target-disease network. Integrative Biology : Quantitative Biosciences From Nano to Macro. 4: 778-88. PMID 22538435 DOI: 10.1039/C2Ib00154C |
0.329 |
|
| 2011 |
Elefsinioti A, Saraç ÖS, Hegele A, Plake C, Hubner NC, Poser I, Sarov M, Hyman A, Mann M, Schroeder M, Stelzl U, Beyer A. Large-scale de novo prediction of physical protein-protein association. Molecular & Cellular Proteomics : McP. 10: M111.010629. PMID 21836163 DOI: 10.1074/Mcp.M111.010629 |
0.353 |
|
| 2011 |
Si J, Zhang Z, Lin B, Schroeder M, Huang B. MetaDBSite: a meta approach to improve protein DNA-binding sites prediction. Bmc Systems Biology. 5: S7. PMID 21689482 DOI: 10.1186/1752-0509-5-S1-S7 |
0.321 |
|
| 2011 |
Zhang Z, Li Y, Lin B, Schroeder M, Huang B. Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction. Bioinformatics (Oxford, England). 27: 2083-8. PMID 21636590 DOI: 10.1093/Bioinformatics/Btr331 |
0.358 |
|
| 2011 |
Haupt VJ, Schroeder M. Old friends in new guise: repositioning of known drugs with structural bioinformatics. Briefings in Bioinformatics. 12: 312-26. PMID 21441562 DOI: 10.1093/Bib/Bbr011 |
0.321 |
|
| 2011 |
Plake C, Schroeder M. Computational polypharmacology with text mining and ontologies. Current Pharmaceutical Biotechnology. 12: 449-57. PMID 21133848 DOI: 10.2174/138920111794480624 |
0.353 |
|
| 2010 |
Wächter T, Schroeder M. Semi-automated ontology generation within OBO-Edit. Bioinformatics (Oxford, England). 26: i88-96. PMID 20529942 DOI: 10.1093/Bioinformatics/Btq188 |
0.334 |
|
| 2010 |
Preissner S, Kroll K, Dunkel M, Senger C, Goldsobel G, Kuzman D, Guenther S, Winnenburg R, Schroeder M, Preissner R. SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions. Nucleic Acids Research. 38: D237-43. PMID 19934256 DOI: 10.1093/Nar/Gkp970 |
0.316 |
|
| 2010 |
Marsico A, Scheubert K, Tuukkanen A, Henschel A, Winter C, Winnenburg R, Schroeder M. MeMotif: a database of linear motifs in alpha-helical transmembrane proteins. Nucleic Acids Research. 38: D181-9. PMID 19910368 DOI: 10.1093/Nar/Gkp1042 |
0.34 |
|
| 2009 |
Winnenburg R, Plake C, Schroeder M. Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. Bmc Bioinformatics. 10: S3. PMID 19758467 DOI: 10.1186/1471-2105-10-S8-S3 |
0.339 |
|
| 2009 |
Andreopoulos B, Winter C, Labudde D, Schroeder M. Triangle network motifs predict complexes by complementing high-error interactomes with structural information. Bmc Bioinformatics. 10: 196. PMID 19558694 DOI: 10.1186/1471-2105-10-196 |
0.349 |
|
| 2009 |
Doms A, Schroeder M. Semantic search with GoPubMed Lecture Notes in Computer Science. 5500: 309-342. DOI: 10.1007/978-3-642-04581-3_7 |
0.303 |
|
| 2008 |
Winnenburg R, Wächter T, Plake C, Doms A, Schroeder M. Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? Briefings in Bioinformatics. 9: 466-78. PMID 19060303 DOI: 10.1093/Bib/Bbn043 |
0.318 |
|
| 2008 |
Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M. Gene mention normalization and interaction extraction with context models and sentence motifs. Genome Biology. 9: S14. PMID 18834492 DOI: 10.1186/Gb-2008-9-S2-S14 |
0.33 |
|
| 2008 |
Royer L, Reimann M, Andreopoulos B, Schroeder M. Unraveling protein networks with power graph analysis. Plos Computational Biology. 4: e1000108. PMID 18617988 DOI: 10.1371/Journal.Pcbi.1000108 |
0.306 |
|
| 2008 |
Huang B, Schroeder M. Using protein binding site prediction to improve protein docking. Gene. 422: 14-21. PMID 18616991 DOI: 10.1016/J.Gene.2008.06.014 |
0.31 |
|
| 2007 |
Henschel A, Winter C, Kim WK, Schroeder M. Using structural motif descriptors for sequence-based binding site prediction. Bmc Bioinformatics. 8: S5. PMID 17570148 DOI: 10.1186/1471-2105-8-S4-S5 |
0.341 |
|
| 2006 |
Kim WK, Henschel A, Winter C, Schroeder M. The many faces of protein-protein interactions: A compendium of interface geometry. Plos Computational Biology. 2: e124. PMID 17009862 DOI: 10.1371/Journal.Pcbi.0020124 |
0.355 |
|
| 2006 |
Huang B, Schroeder M. LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation. Bmc Structural Biology. 6: 19. PMID 16995956 DOI: 10.1186/1472-6807-6-19 |
0.312 |
|
| 2006 |
Teyra J, Doms A, Schroeder M, Pisabarro MT. SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. Bmc Bioinformatics. 7: 104. PMID 16512892 DOI: 10.1186/1471-2105-7-104 |
0.347 |
|
| 2006 |
Winter C, Henschel A, Kim WK, Schroeder M. SCOPPI: a structural classification of protein-protein interfaces. Nucleic Acids Research. 34: D310-4. PMID 16381874 DOI: 10.1093/Nar/Gkj099 |
0.344 |
|
| 2006 |
Henschel A, Kim WK, Schroeder M. Equivalent binding sites reveal convergently evolved interaction motifs. Bioinformatics (Oxford, England). 22: 550-5. PMID 16287935 DOI: 10.1093/Bioinformatics/Bti782 |
0.34 |
|
| 2006 |
Doms A, Jakoniene V, Lambrix P, Schroeder M, Wachter T. Ontologies and Text Mining as a Basis for a Semantic Web for the Life Sciences Lecture Notes in Computer Science. 164-183. DOI: 10.1007/11837787_7 |
0.331 |
|
| 2005 |
Doms A, Schroeder M. GoPubMed: exploring PubMed with the Gene Ontology. Nucleic Acids Research. 33: W783-6. PMID 15980585 DOI: 10.1093/Nar/Gki470 |
0.309 |
|
| 2005 |
Park D, Lee S, Bolser D, Schroeder M, Lappe M, Oh D, Bhak J. Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). Bioinformatics (Oxford, England). 21: 3234-40. PMID 15914543 DOI: 10.1093/Bioinformatics/Bti512 |
0.326 |
|
| 2005 |
Gong S, Yoon G, Jang I, Bolser D, Dafas P, Schroeder M, Choi H, Cho Y, Han K, Lee S, Choi H, Lappe M, Holm L, Kim S, Oh D, et al. PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinformatics (Oxford, England). 21: 2541-3. PMID 15749693 DOI: 10.1093/Bioinformatics/Bti366 |
0.346 |
|
| 2005 |
Dawelbait G, Pilarsky C, Zhang Y, Grützmann R, Schroeder M. Structural protein interactions predict kinase-inhibitor interactions in upregulated pancreas tumour genes expression data Lecture Notes in Computer Science. 1-11. DOI: 10.1007/11560500_1 |
0.328 |
|
| 2004 |
Dafas P, Bolser D, Gomoluch J, Park J, Schroeder M. Using convex hulls to extract interaction interfaces from known structures. Bioinformatics (Oxford, England). 20: 1486-90. PMID 15231539 DOI: 10.1093/Bioinformatics/Bth106 |
0.301 |
|
| 2003 |
Bolser D, Dafas P, Harrington R, Park J, Schroeder M. Visualisation and graph-theoretic analysis of a large-scale protein structural interactome. Bmc Bioinformatics. 4: 45. PMID 14531933 DOI: 10.1186/1471-2105-4-45 |
0.348 |
|
| 2002 |
Damásio C, Fröhlich P, Nejdl W, Pereira L, Schroeder M. Applied Intelligence. 17: 187-202. DOI: 10.1023/A:1016112931442 |
0.497 |
|
| 2001 |
Möller S, Schroeder M, Apweiler R. Consistent integration of non-reliable heterogeneous information resources applied to the annotation of transmembrane proteins Computers and Chemistry. 26: 41-49. PMID 11765850 DOI: 10.1016/S0097-8485(01)00098-5 |
0.319 |
|
| 1998 |
Fröhlich P, Nejdl W, Schroeder M. Journal of Automated Reasoning. 20: 81-105. DOI: 10.1023/A:1005948807784 |
0.51 |
|
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