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Yen T. Lin, Ph.D. - Publications

Affiliations: 
2013 Physics University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Applied Mathematics, General Physics, Ecology Biology
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lin YT, Buchler NE. Exact and efficient hybrid Monte Carlo algorithm for accelerated Bayesian inference of gene expression models from snapshots of single-cell transcripts. The Journal of Chemical Physics. 151: 024106. PMID 31301707 DOI: 10.1063/1.5110503  0.387
2019 Lin YT, Feng S, Hlavacek WS. Scaling methods for accelerating kinetic Monte Carlo simulations of chemical reaction networks. The Journal of Chemical Physics. 150: 244101. PMID 31255063 DOI: 10.1063/1.5096774  0.363
2019 Hufton PG, Lin YT, Galla T. Classical stochastic systems with fast-switching environments: Reduced master equations, their interpretation, and limits of validity. Physical Review. E. 99: 032121. PMID 30999530 DOI: 10.1103/Physreve.99.032121  0.324
2019 Hufton PG, Lin YT, Galla T. Model reduction methods for population dynamics with fast-switching environments: Reduced master equations, stochastic differential equations, and applications. Physical Review. E. 99: 032122. PMID 30999395 DOI: 10.1103/Physreve.99.032122  0.425
2019 Erickson KE, Rukhlenko OS, Shahinuzzaman M, Slavkova KP, Lin YT, Suderman R, Stites EC, Anghel M, Posner RG, Barua D, Kholodenko BN, Hlavacek WS. Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor. Plos Computational Biology. 15: e1006706. PMID 30653502 DOI: 10.1371/Journal.Pcbi.1006706  0.316
2018 Lin YT, Chylek LA, Lemons NW, Hlavacek WS. Using Equation-Free Computation to Accelerate Network-Free Stochastic Simulation of Chemical Kinetics. The Journal of Physical Chemistry. B. PMID 29851484 DOI: 10.1021/Acs.Jpcb.8B02960  0.322
2018 Suderman R, Mitra ED, Lin YT, Erickson KE, Feng S, Hlavacek WS. Generalizing Gillespie's Direct Method to Enable Network-Free Simulations. Bulletin of Mathematical Biology. PMID 29594824 DOI: 10.1007/S11538-018-0418-2  0.319
2018 Lin YT, Hufton PG, Lee EJ, Potoyan DA. A stochastic and dynamical view of pluripotency in mouse embryonic stem cells. Plos Computational Biology. 14: e1006000. PMID 29451874 DOI: 10.1371/Journal.Pcbi.1006000  0.325
2018 Lin YT, Buchler NE. Efficient analysis of stochastic gene dynamics in the non-adiabatic regime using piecewise deterministic Markov processes. Journal of the Royal Society, Interface. 15. PMID 29386401 DOI: 10.1098/Rsif.2017.0804  0.363
2018 Hufton PG, Lin YT, Galla T. Phenotypic switching of populations of cells in a stochastic environment Journal of Statistical Mechanics: Theory and Experiment. 2018: 023501. DOI: 10.1088/1742-5468/Aaa78E  0.36
2017 Lin YT, Chang ET, Eatock J, Galla T, Clayton RH. Mechanisms of stochastic onset and termination of atrial fibrillation studied with a cellular automaton model. Journal of the Royal Society, Interface. 14. PMID 28356539 DOI: 10.1098/Rsif.2016.0968  0.352
2016 Hufton PG, Lin YT, Galla T, McKane AJ. Intrinsic noise in systems with switching environments. Physical Review. E. 93: 052119. PMID 27300842 DOI: 10.1103/Physreve.93.052119  0.423
2016 Chang ET, Lin YT, Galla T, Clayton RH, Eatock J. A Stochastic Individual-Based Model of the Progression of Atrial Fibrillation in Individuals and Populations. Plos One. 11: e0152349. PMID 27070920 DOI: 10.1371/Journal.Pone.0152349  0.341
2016 Lin YT, Doering CR. Gene expression dynamics with stochastic bursts: Construction and exact results for a coarse-grained model. Physical Review. E. 93: 022409. PMID 26986364 DOI: 10.1103/Physreve.93.022409  0.568
2016 Lin YT, Galla T. Bursting noise in gene expression dynamics: linking microscopic and mesoscopic models. Journal of the Royal Society, Interface / the Royal Society. 13. PMID 26763330 DOI: 10.1098/Rsif.2015.0772  0.38
2015 Lin YT, Kim H, Doering CR. Demographic stochasticity and evolution of dispersion I. Spatially homogeneous environments. Journal of Mathematical Biology. 70: 647-78. PMID 24682331 DOI: 10.1007/s00285-014-0776-9  0.547
2015 Lin YT, Kim H, Doering CR. Demographic stochasticity and evolution of dispersion II: spatially inhomogeneous environments. Journal of Mathematical Biology. 70: 679-707. PMID 24671427 DOI: 10.1007/s00285-014-0756-0  0.574
2012 Lin YT, Kim H, Doering CR. Features of Fast Living: On the Weak Selection for Longevity in Degenerate Birth-Death Processes Journal of Statistical Physics. 148: 647-663. DOI: 10.1007/S10955-012-0479-9  0.556
2011 Khain E, Lin YT, Sander LM. Fluctuations and stability in front propagation Epl. 93. DOI: 10.1209/0295-5075/93/28001  0.326
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