| Year |
Citation |
Score |
| 2023 |
Miardan MM, Jamshidpey A, Sankoff D. Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 30: 118-130. PMID 36595359 DOI: 10.1089/cmb.2021.0468 |
0.327 |
|
| 2022 |
Chanderbali AS, Jin L, Xu Q, Zhang Y, Zhang J, Jian S, Carroll E, Sankoff D, Albert VA, Howarth DG, Soltis DE, Soltis PS. Buxus and Tetracentron genomes help resolve eudicot genome history. Nature Communications. 13: 643. PMID 35110570 DOI: 10.1038/s41467-022-28312-w |
0.339 |
|
| 2022 |
Pouryahya F, Sankoff D. Peripheral structures in unlabelled trees and the accumulation of subgenomes in the evolution of polyploids. Journal of Theoretical Biology. 532: 110924. PMID 34627861 DOI: 10.1016/j.jtbi.2021.110924 |
0.354 |
|
| 2021 |
Xu Q, Zhang X, Zhang Y, Zheng C, Leebens-Mack JH, Jin L, Sankoff D. The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny. Journal of Bioinformatics and Computational Biology. 19: 2140008. PMID 34806950 DOI: 10.1142/S0219720021400084 |
0.33 |
|
| 2021 |
Xu Q, Jin L, Zhang Y, Zhang X, Zheng C, Leebens-Mack JH, Sankoff D. Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 28: 1156-1179. PMID 34783601 DOI: 10.1089/cmb.2021.0340 |
0.353 |
|
| 2021 |
Zhang Y, Yu Z, Zheng C, Sankoff D. Integrated synteny- and similarity-based inference on the polyploidization-fractionation cycle. Interface Focus. 11: 20200059. PMID 34123351 DOI: 10.1098/rsfs.2020.0059 |
0.333 |
|
| 2021 |
Hao Y, Mabry ME, Edger PP, Freeling M, Zheng C, Jin L, VanBuren R, Colle M, An H, Abrahams RS, Washburn JD, Qi X, Barry K, Daum C, Shu S, ... ... Sankoff D, et al. The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome Research. PMID 33863805 DOI: 10.1101/gr.270033.120 |
0.356 |
|
| 2021 |
Chen S, Wang Y, Yu L, Zheng T, Wang S, Yue Z, Jiang J, Kumari S, Zheng C, Tang H, Li J, Li Y, Chen J, Zhang W, Kuang H, ... ... Sankoff D, et al. Genome sequence and evolution of Betula platyphylla. Horticulture Research. 8: 37. PMID 33574224 DOI: 10.1038/s41438-021-00481-7 |
0.371 |
|
| 2020 |
Yu Z, Zheng C, Albert VA, Sankoff D. Excision Dominates Pseudogenization During Fractionation After Whole Genome Duplication and in Gene Loss After Speciation in Plants. Frontiers in Genetics. 11: 603056. PMID 33391353 DOI: 10.3389/fgene.2020.603056 |
0.369 |
|
| 2020 |
Perumal S, Koh CS, Jin L, Buchwaldt M, Higgins EE, Zheng C, Sankoff D, Robinson SJ, Kagale S, Navabi ZK, Tang L, Horner KN, He Z, Bancroft I, Chalhoub B, et al. A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome. Nature Plants. 6: 929-941. PMID 32782408 DOI: 10.1038/S41477-020-0735-Y |
0.45 |
|
| 2019 |
Zhang Y, Zheng C, Islam S, Kim YM, Sankoff D. Branching out to Speciation in a Model of Fractionation: the Malvaceae. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31869797 DOI: 10.1109/Tcbb.2019.2955649 |
0.447 |
|
| 2019 |
Zhang Y, Zheng C, Sankoff D. Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignment. Bmc Bioinformatics. 20: 635. PMID 31842736 DOI: 10.1186/S12859-019-3202-X |
0.431 |
|
| 2019 |
Zhang Y, Zheng C, Sankoff D. A branching process for homology distribution-based inference of polyploidy, speciation and loss. Algorithms For Molecular Biology : Amb. 14: 18. PMID 31388348 DOI: 10.1186/S13015-019-0153-8 |
0.434 |
|
| 2019 |
Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, ... ... Sankoff D, et al. The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31387975 DOI: 10.1073/Pnas.1822129116 |
0.451 |
|
| 2018 |
Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, ... ... Sankoff D, et al. Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30425353 DOI: 10.1038/S41588-018-0293-7 |
0.395 |
|
| 2018 |
Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, ... ... Sankoff D, et al. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics. PMID 30297971 DOI: 10.1038/S41588-018-0237-2 |
0.399 |
|
| 2018 |
Sankoff D, Zheng C, Zhang Y, Meidanis J, Lyons E, Tang H. Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30072336 DOI: 10.1109/Tcbb.2018.2849377 |
0.441 |
|
| 2018 |
Zheng C, Jeong Y, Turcotte MG, Sankoff D. Resolution effects in reconstructing ancestral genomes. Bmc Genomics. 19: 100. PMID 29764371 DOI: 10.1186/S12864-018-4462-Y |
0.407 |
|
| 2018 |
Zhang Y, Zheng C, Sankoff D. Pinning down ploidy in paleopolyploid plants. Bmc Genomics. 19: 287. PMID 29745846 DOI: 10.1186/S12864-018-4624-Y |
0.45 |
|
| 2018 |
Sankoff D, Zheng C. Whole Genome Duplication in Plants: Implications for Evolutionary Analysis. Methods in Molecular Biology (Clifton, N.J.). 1704: 291-315. PMID 29277870 DOI: 10.1007/978-1-4939-7463-4_10 |
0.44 |
|
| 2017 |
Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, ... ... Sankoff D, et al. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nature Ecology & Evolution. 1: 59. PMID 28812732 DOI: 10.1038/S41559-016-0059 |
0.34 |
|
| 2017 |
Zhang Y, Zheng C, Sankoff D. Evolutionary model for the statistical divergence of paralogous and orthologous gene pairs generated by whole genome duplication and speciation. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28715335 DOI: 10.1109/Tcbb.2017.2712695 |
0.453 |
|
| 2017 |
Chen ECH, Morin A, Chauchat JH, Sankoff D. Statistical analysis of fractionation resistance by functional category and expression. Bmc Genomics. 18: 366. PMID 28589858 DOI: 10.1186/S12864-017-3736-0 |
0.337 |
|
| 2017 |
Lan T, Renner T, Ibarra-Laclette E, Farr KM, Chang TH, Cervantes-Pérez SA, Zheng C, Sankoff D, Tang H, Purbojati RW, Putra A, Drautz-Moses DI, Schuster SC, Herrera-Estrella L, Albert VA. Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 28507139 DOI: 10.1073/Pnas.1702072114 |
0.445 |
|
| 2016 |
Vallée GC, Muñoz DS, Sankoff D. Economic importance, taxonomic representation and scientific priority as drivers of genome sequencing projects. Bmc Genomics. 17: 782. PMID 28185558 DOI: 10.1186/S12864-016-3100-9 |
0.404 |
|
| 2016 |
Larlee CA, Brandts A, Sankoff D. Compromise or optimize? The breakpoint anti-median. Bmc Bioinformatics. 17: 473. PMID 28105920 DOI: 10.1186/S12859-016-1340-Y |
0.464 |
|
| 2016 |
Sabir JS, Jansen RK, Arasappan D, Calderon V, Noutahi E, Zheng C, Park S, Sabir MJ, Baeshen MN, Hajrah NH, Khiyami MA, Baeshen NA, Obaid AY, Al-Malki AL, Sankoff D, et al. The nuclear genome of Rhazya stricta and the evolution of alkaloid diversity in a medically relevant clade of Apocynaceae. Scientific Reports. 6: 33782. PMID 27653669 DOI: 10.1038/Srep33782 |
0.449 |
|
| 2016 |
Zheng C, Sankoff D. Locating rearrangement events in a phylogeny based on highly fragmented assemblies. Bmc Genomics. 17: 1. PMID 26818753 DOI: 10.1186/S12864-015-2294-6 |
0.451 |
|
| 2015 |
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, ... ... Sankoff D, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435 |
0.441 |
|
| 2015 |
Zheng C, Santos Muñoz D, Albert VA, Sankoff D. Syntenic block overlap multiplicities with a panel of reference genomes provide a signature of ancient polyploidization events. Bmc Genomics. 16: S8. PMID 26449933 DOI: 10.1186/1471-2164-16-S10-S8 |
0.463 |
|
| 2014 |
Chen EC, Sankoff D. Gene expression and fractionation resistance. Bmc Genomics. 15: S19. PMID 25573431 DOI: 10.1186/1471-2164-15-S6-S19 |
0.324 |
|
| 2014 |
Zheng C, Kononenko A, Leebens-Mack J, Lyons E, Sankoff D. Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants. Bmc Genomics. 15: S8. PMID 25572777 DOI: 10.1186/1471-2164-15-S6-S8 |
0.327 |
|
| 2014 |
Larlee C, Zheng C, Sankoff D. Near-medians that avoid the corners; a combinatorial probability approach. Bmc Genomics. 15: S1. PMID 25572274 DOI: 10.1186/1471-2164-15-S6-S1 |
0.455 |
|
| 2014 |
Jamshidpey A, Jamshidpey A, Sankoff D. Sets of medians in the non-geodesic pseudometric space of unsigned genomes with breakpoints. Bmc Genomics. 15: S3. PMID 25571965 DOI: 10.1186/1471-2164-15-S6-S3 |
0.362 |
|
| 2014 |
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, ... ... Sankoff D, et al. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science (New York, N.Y.). 345: 1181-4. PMID 25190796 DOI: 10.1126/Science.1255274 |
0.447 |
|
| 2014 |
Zheng C, Sankoff D. Practical halving; the Nelumbo nucifera evidence on early eudicot evolution. Computational Biology and Chemistry. 50: 75-81. PMID 24525373 DOI: 10.1016/J.Compbiolchem.2014.01.010 |
0.473 |
|
| 2013 |
Chen EC, Buen Abad Najar C, Zheng C, Brandts A, Lyons E, Tang H, Carretero-Paulet L, Albert VA, Sankoff D. The dynamics of functional classes of plant genes in rediploidized ancient polyploids. Bmc Bioinformatics. 14: S19. PMID 24564814 DOI: 10.1186/1471-2105-14-S15-S19 |
0.373 |
|
| 2013 |
Zheng C, Chen E, Albert VA, Lyons E, Sankoff D. Ancient eudicot hexaploidy meets ancestral eurosid gene order. Bmc Genomics. 14: S3. PMID 24564362 DOI: 10.1186/1471-2164-14-S7-S3 |
0.466 |
|
| 2013 |
Zheng C, Sankoff D. Practical aliquoting of flowering plant genomes. Bmc Bioinformatics. 14: S8. PMID 24564303 DOI: 10.1186/1471-2105-14-S15-S8 |
0.471 |
|
| 2013 |
Jamshidpey A, Sankoff D. Phase change for the accuracy of the median value in estimating divergence time. Bmc Bioinformatics. 14: S7. PMID 24564272 DOI: 10.1186/1471-2105-14-S15-S7 |
0.339 |
|
| 2012 |
Jahn K, Zheng C, Ková? J, Sankoff D. A consolidation algorithm for genomes fractionated after higher order polyploidization. Bmc Bioinformatics. 13: S8. PMID 23282012 DOI: 10.1186/1471-2105-13-S19-S8 |
0.473 |
|
| 2012 |
Sankoff D, Zheng C. Fractionation, rearrangement and subgenome dominance. Bioinformatics (Oxford, England). 28: i402-i408. PMID 22962459 DOI: 10.1093/Bioinformatics/Bts392 |
0.393 |
|
| 2012 |
Yang Z, Sankoff D. Generalized adjacency and the conservation of gene clusters in genetic networks defined by synthetic lethals. Bmc Bioinformatics. 13: S8. PMID 22901093 DOI: 10.1186/1471-2105-13-S9-S8 |
0.339 |
|
| 2012 |
Zheng C, Sankoff D. Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes. Bmc Bioinformatics. 13: S9. PMID 22759433 DOI: 10.1186/1471-2105-13-S10-S9 |
0.454 |
|
| 2012 |
Muñoz A, Sankoff D. Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution. Bmc Bioinformatics. 13: S6. PMID 22536904 DOI: 10.1186/1471-2105-13-S3-S6 |
0.433 |
|
| 2012 |
Jiang H, Zheng C, Sankoff D, Zhu B. Scaffold filling under the breakpoint and related distances. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1220-9. PMID 22529329 DOI: 10.1109/Tcbb.2012.57 |
0.46 |
|
| 2012 |
El-Mabrouk N, Sankoff D. Analysis of gene order evolution beyond single-copy genes. Methods in Molecular Biology (Clifton, N.J.). 855: 397-429. PMID 22407718 DOI: 10.1007/978-1-61779-582-4_15 |
0.481 |
|
| 2012 |
Sankoff D, Zheng C, Wang B. A model for biased fractionation after whole genome duplication. Bmc Genomics. 13: S8. PMID 22369177 DOI: 10.1186/1471-2164-13-S1-S8 |
0.376 |
|
| 2012 |
Swenson KM, Chen E, Pattengale ND, Sankoff D. The Kernel of Maximum Agreement Subtrees. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1023-31. PMID 22231622 DOI: 10.1109/Tcbb.2012.11 |
0.348 |
|
| 2012 |
Costa V, Dantas S, Sankoff D, Xu X. Gene clusters as intersections of powers of paths Journal of the Brazilian Computer Society. 18: 129-136. DOI: 10.1007/S13173-012-0064-8 |
0.338 |
|
| 2011 |
Badr G, Swenson KM, Sankoff D. Listing all parsimonious reversal sequences: new algorithms and perspectives. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1201-10. PMID 21899425 DOI: 10.1089/Cmb.2011.0133 |
0.452 |
|
| 2011 |
Warren R, Sankoff D. Genome aliquoting revisited. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1065-75. PMID 21899416 DOI: 10.1089/Cmb.2011.0087 |
0.411 |
|
| 2011 |
Zheng C, Sankoff D. On the PATHGROUPS approach to rapid small phylogeny. Bmc Bioinformatics. 12: S4. PMID 21342571 DOI: 10.1186/1471-2105-12-S1-S4 |
0.46 |
|
| 2010 |
Adam Z, Sankoff D. A statistically fair comparison of ancestral genome reconstructions, based on breakpoint and rearrangement distances. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1299-314. PMID 20874410 DOI: 10.1089/Cmb.2010.0121 |
0.396 |
|
| 2010 |
Yang Z, Sankoff D. Natural parameter values for generalized gene adjacency. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1113-28. PMID 20874399 DOI: 10.1089/Cmb.2010.0099 |
0.382 |
|
| 2010 |
Muñoz A, Sankoff D. Rearrangement phylogeny of genomes in contig form. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 579-87. PMID 20714028 DOI: 10.1109/Tcbb.2010.66 |
0.495 |
|
| 2010 |
Muñoz A, Zheng C, Zhu Q, Albert VA, Rounsley S, Sankoff D. Scaffold filling, contig fusion and comparative gene order inference. Bmc Bioinformatics. 11: 304. PMID 20525342 DOI: 10.1186/1471-2105-11-304 |
0.477 |
|
| 2010 |
Sankoff D, Zheng C, Zhu Q. The collapse of gene complement following whole genome duplication. Bmc Genomics. 11: 313. PMID 20482863 DOI: 10.1186/1471-2164-11-313 |
0.457 |
|
| 2009 |
Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, Depamphilis CW, Wall PK, Soltis PS. Polyploidy and angiosperm diversification. American Journal of Botany. 96: 336-48. PMID 21628192 DOI: 10.3732/Ajb.0800079 |
0.458 |
|
| 2009 |
Sankoff D, Zheng C, Wall PK, dePamphilis C, Leebens-Mack J, Albert VA. Towards improved reconstruction of ancestral gene order in angiosperm phylogeny. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1353-67. PMID 19803735 DOI: 10.1089/Cmb.2009.0103 |
0.477 |
|
| 2009 |
Sankoff D. The where and wherefore of evolutionary breakpoints. Journal of Biology. 8: 66. PMID 19664183 DOI: 10.1186/Jbiol162 |
0.421 |
|
| 2009 |
Zheng C, Kerr Wall P, Leebens-Mack J, DE Pamphilis C, Albert VA, Sankoff D. Gene loss under neighborhood selection following whole genome duplication and the reconstruction of the ancestral Populus genome. Journal of Bioinformatics and Computational Biology. 7: 499-520. PMID 19507287 DOI: 10.1142/S0219720009004199 |
0.466 |
|
| 2009 |
Sankoff D. Reconstructing the history of yeast genomes. Plos Genetics. 5: e1000483. PMID 19436717 DOI: 10.1371/Journal.Pgen.1000483 |
0.483 |
|
| 2009 |
Zhu Q, Adam Z, Choi V, Sankoff D. Generalized gene adjacencies, graph bandwidth, and clusters in yeast evolution. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 213-20. PMID 19407346 DOI: 10.1109/Tcbb.2008.121 |
0.333 |
|
| 2009 |
Tannier E, Zheng C, Sankoff D. Multichromosomal median and halving problems under different genomic distances. Bmc Bioinformatics. 10: 120. PMID 19386099 DOI: 10.1186/1471-2105-10-120 |
0.44 |
|
| 2009 |
Warren R, Sankoff D. Genome halving with double cut and join. Journal of Bioinformatics and Computational Biology. 7: 357-71. PMID 19340920 DOI: 10.1142/S0219720009004102 |
0.453 |
|
| 2009 |
Warren R, Sankoff D. Genome aliquoting with double cut and join. Bmc Bioinformatics. 10: S2. PMID 19208119 DOI: 10.1186/1471-2105-10-S1-S2 |
0.413 |
|
| 2009 |
Sankoff D, Zheng C, Muñoz A, Yang Z, Adam Z, Warren R, Choi V, Zhu Q. Issues in the reconstruction of gene order evolution Journal of Computer Science and Technology. 25: 10-25. DOI: 10.1007/S11390-010-9301-9 |
0.45 |
|
| 2009 |
Moret BME, Miller W, Pevzner PA, Sankoff D. Computational challenges in comparative genomics: Gene family evolution, ancestral genome reconstruction, and applications to human genetics Pacific Symposium On Biocomputing 2009, Psb 2009. 111-113. |
0.304 |
|
| 2008 |
Zheng C, Wall PK, Leebens-Mack J, Albert VA, dePamphilis C, Sankoff D. The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 7: 261-71. PMID 19642286 |
0.322 |
|
| 2008 |
Adam Z, Sankoff D. The ABCs of MGR with DCJ. Evolutionary Bioinformatics Online. 4: 69-74. PMID 19204809 DOI: 10.4137/Ebo.S0 |
0.408 |
|
| 2008 |
Zheng C, Zhu Q, Sankoff D. Descendants of whole genome duplication within gene order phylogeny. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 947-64. PMID 18788908 DOI: 10.1089/Cmb.2008.0118 |
0.476 |
|
| 2008 |
Zheng C, Zhu Q, Adam Z, Sankoff D. Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. Bioinformatics (Oxford, England). 24: i96-104. PMID 18586750 DOI: 10.1093/bioinformatics/btn146 |
0.35 |
|
| 2007 |
Zheng C, Zhu Q, Sankoff D. Removing noise and ambiguities from comparative maps in rearrangement analysis. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 4: 515-22. PMID 17975263 DOI: 10.1109/Tcbb.2007.1075 |
0.418 |
|
| 2007 |
Sankoff D, Zheng C, Zhu Q. Polyploids, genome halving and phylogeny. Bioinformatics (Oxford, England). 23: i433-9. PMID 17646328 DOI: 10.1093/bioinformatics/btm169 |
0.347 |
|
| 2007 |
Adam Z, Turmel M, Lemieux C, Sankoff D. Common intervals and symmetric difference in a model-free phylogenomics, with an application to streptophyte evolution. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 436-45. PMID 17572022 DOI: 10.1089/Cmb.2007.A005 |
0.48 |
|
| 2007 |
Xu W, Zheng C, Sankoff D. Paths and cycles in breakpoint graph of random multichromosomal genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 423-35. PMID 17572021 DOI: 10.1089/Cmb.2007.A004 |
0.378 |
|
| 2006 |
Zheng C, Zhu Q, Sankoff D. Genome halving with an outgroup. Evolutionary Bioinformatics Online. 2: 295-302. PMID 19455223 DOI: 10.4137/Ebo.S0 |
0.459 |
|
| 2006 |
Sankoff D, Haque L. The distribution of genomic distance between random genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 1005-12. PMID 16796547 DOI: 10.1089/Cmb.2006.13.1005 |
0.414 |
|
| 2006 |
Sankoff D. The signal in the genomes. Plos Computational Biology. 2: e35. PMID 16683016 DOI: 10.1371/Journal.Pcbi.0020035 |
0.454 |
|
| 2006 |
Mazowita M, Haque L, Sankoff D. Stability of rearrangement measures in the comparison of genome sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 554-66. PMID 16597256 DOI: 10.1089/Cmb.2006.13.554 |
0.423 |
|
| 2006 |
Zheng C, Sankoff D. Genome rearrangements with partially ordered chromosomes Journal of Combinatorial Optimization. 11: 133-144. DOI: 10.1007/S10878-006-7120-2 |
0.429 |
|
| 2006 |
Zheng C, Sankoff D. Rearrangement of noisy genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3992: 791-798. DOI: 10.1007/11758525_106 |
0.321 |
|
| 2005 |
Hoberman R, Sankoff D, Durand D. The statistical analysis of spatially clustered genes under the maximum gap criterion. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 1083-102. PMID 16241899 DOI: 10.1089/Cmb.2005.12.1083 |
0.383 |
|
| 2005 |
Sankoff D, Trinh P. Chromosomal breakpoint reuse in genome sequence rearrangement. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 812-21. PMID 16108718 DOI: 10.1089/Cmb.2005.12.812 |
0.466 |
|
| 2005 |
Zheng C, Lenert A, Sankoff D. Reversal distance for partially ordered genomes. Bioinformatics (Oxford, England). 21: i502-8. PMID 15961497 DOI: 10.1093/Bioinformatics/Bti1037 |
0.443 |
|
| 2004 |
Trinh P, McLysaght A, Sankoff D. Genomic features in the breakpoint regions between syntenic blocks. Bioinformatics (Oxford, England). 20: i318-25. PMID 15262815 DOI: 10.1093/bioinformatics/bth934 |
0.321 |
|
| 2004 |
Sankoff D, Trinh P. Chromosomal breakpoint re-use in the inference of genome sequence rearrangement Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 8: 30-35. |
0.318 |
|
| 2003 |
Sankoff D. Rearrangements and chromosomal evolution. Current Opinion in Genetics & Development. 13: 583-7. PMID 14638318 DOI: 10.1016/J.Gde.2003.10.006 |
0.446 |
|
| 2003 |
Sankoff D, Nadeau JH. Chromosome rearrangements in evolution: From gene order to genome sequence and back. Proceedings of the National Academy of Sciences of the United States of America. 100: 11188-9. PMID 14506293 DOI: 10.1073/Pnas.2035002100 |
0.476 |
|
| 2003 |
Durand D, Sankoff D. Tests for gene clustering. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 453-82. PMID 12935338 DOI: 10.1089/10665270360688129 |
0.441 |
|
| 2003 |
Eichler EE, Sankoff D. Structural dynamics of eukaryotic chromosome evolution. Science (New York, N.Y.). 301: 793-7. PMID 12907789 DOI: 10.1126/Science.1086132 |
0.402 |
|
| 2003 |
Lefebvre JF, El-Mabrouk N, Tillier E, Sankoff D. Detection and validation of single gene inversions. Bioinformatics (Oxford, England). 19: i190-6. PMID 12855457 DOI: 10.1093/Bioinformatics/Btg1025 |
0.481 |
|
| 2003 |
El-Mabrouk N, Sankoff D. The reconstruction of doubled genomes Siam Journal On Computing. 32: 754-792. DOI: 10.1137/S0097539700377177 |
0.473 |
|
| 2002 |
Sankoff D. Short inversions and conserved gene cluster. Bioinformatics (Oxford, England). 18: 1305-8. PMID 12376374 DOI: 10.1093/Bioinformatics/18.10.1305 |
0.354 |
|
| 2002 |
Sankoff D, Deneault M, Turbis P, Allen C. Chromosomal distributions of breakpoints in cancer, infertility, and evolution. Theoretical Population Biology. 61: 497-501. PMID 12167369 DOI: 10.1006/Tpbi.2002.1599 |
0.32 |
|
| 2001 |
Sankoff D. Gene and genome duplication. Current Opinion in Genetics & Development. 11: 681-4. PMID 11682313 DOI: 10.1016/S0959-437X(00)00253-7 |
0.464 |
|
| 2000 |
Sankoff D, Bryant D, Deneault M, Lang BF, Burger G. Early eukaryote evolution based on mitochondrial gene order breakpoints. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 7: 521-35. PMID 11108477 DOI: 10.1089/106652700750050925 |
0.39 |
|
| 1999 |
Gray MW, Burger G, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Lang BF. A Genomics Approach to Mitochondrial Evolution. The Biological Bulletin. 196: 400-403. PMID 28296487 DOI: 10.2307/1542980 |
0.32 |
|
| 1999 |
El-Mabrouk N, Sankoff D. On the Reconstruction of Ancient Doubled Circular Genomes Using Minimum Reversals. Genome Informatics. Workshop On Genome Informatics. 10: 83-93. PMID 11072345 DOI: 10.11234/Gi1990.10.83 |
0.479 |
|
| 1999 |
Sankoff D. Genome rearrangement with gene families. Bioinformatics (Oxford, England). 15: 909-17. PMID 10743557 |
0.329 |
|
| 1999 |
Sankoff D, Blanchette M. Phylogenetic invariants for genome rearrangements. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 6: 431-45. PMID 10582577 DOI: 10.1089/106652799318373 |
0.493 |
|
| 1999 |
Blanchette M, Kunisawa T, Sankoff D. Gene order breakpoint evidence in animal mitochondrial phylogeny. Journal of Molecular Evolution. 49: 193-203. PMID 10441671 DOI: 10.1007/Pl00006542 |
0.459 |
|
| 1999 |
Bryant D, Sankoff D. Phylogenetic Reconstruction from Genome Order Data Electronic Notes in Discrete Mathematics. 2: 158. DOI: 10.1016/S1571-0653(04)00030-7 |
0.468 |
|
| 1999 |
El-Mabrouk N, Sankoff D. Hybridization and genome rearrangement Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1645: 78-87. DOI: 10.1007/3-540-48452-3_6 |
0.313 |
|
| 1998 |
Sankoff D, Blanchette M. Phylogenetic Invariants for Metazoan Mitochondrial Genome Evolution. Genome Informatics. Workshop On Genome Informatics. 9: 22-31. PMID 11072318 DOI: 10.11234/Gi1990.9.22 |
0.476 |
|
| 1998 |
Sankoff D, Blanchette M. Multiple genome rearrangement and breakpoint phylogeny. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 555-70. PMID 9773350 DOI: 10.1089/Cmb.1998.5.555 |
0.449 |
|
| 1998 |
Gray MW, Lang BF, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Brossard N, Delage E, Littlejohn TG, Plante I, Rioux P, Saint-Louis D, Zhu Y, Burger G. Genome structure and gene content in protist mitochondrial DNAs. Nucleic Acids Research. 26: 865-78. PMID 9461442 DOI: 10.1093/Nar/26.4.865 |
0.42 |
|
| 1997 |
Sankoff D, Ferretti V, Nadeau JH. Conserved segment identification. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 4: 559-65. PMID 9385546 DOI: 10.1089/Cmb.1997.4.559 |
0.337 |
|
| 1997 |
Lang BF, Burger G, O'Kelly CJ, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Gray MW. An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature. 387: 493-7. PMID 9168110 DOI: 10.1038/387493A0 |
0.382 |
|
| 1996 |
Sankoff D, Ferretti V. Karyotype distributions in a stochastic model of reciprocal translocation. Genome Research. 6: 1-9. PMID 8681133 DOI: 10.1101/Gr.6.1.1 |
0.368 |
|
| 1996 |
Blanchette M, Kunisawa T, Sankoff D. Parametric genome rearrangement. Gene. 172: GC11-7. PMID 8654963 DOI: 10.1016/0378-1119(95)00878-0 |
0.45 |
|
| 1996 |
Denovan-Wright EM, Sankoff D, Spencer DF, Lee RW. Evolution of fragmented mitochondrial ribosomal RNA genes in Chlamydomonas. Journal of Molecular Evolution. 42: 382-91. PMID 8642607 DOI: 10.1007/Bf02498632 |
0.35 |
|
| 1996 |
SANKOFF D, SUNDARAM G, KECECIOGLU J. STEINER POINTS IN THE SPACE OF GENOME REARRANGEMENTS International Journal of Foundations of Computer Science. 7: 1-9. DOI: 10.1142/S0129054196000026 |
0.445 |
|
| 1996 |
Sankoff D, Nadeau JH. Conserved synteny as a measure of genomic distance Discrete Applied Mathematics. 71: 247-257. DOI: 10.1016/S0166-218X(96)00067-4 |
0.411 |
|
| 1995 |
Ferretti V, Sankoff D. Phylogenetic invariants for more general evolutionary models. Journal of Theoretical Biology. 173: 147-62. PMID 7739217 DOI: 10.1006/Jtbi.1995.0052 |
0.32 |
|
| 1995 |
Kececioglu J, Sankoff D. Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement Algorithmica. 13: 180-210. DOI: 10.1007/Bf01188586 |
0.386 |
|
| 1994 |
Sankoff D, Abel Y, Hein J. A tree · a window · a hill; generalization of nearest-neighbor interchange in phylogenetic optimization Journal of Classification. 11: 209-232. DOI: 10.1007/Bf01195680 |
0.306 |
|
| 1993 |
Sankoff D. Analytical approaches to genomic evolution. Biochimie. 75: 409-13. PMID 8347727 DOI: 10.1016/0300-9084(93)90174-Q |
0.449 |
|
| 1992 |
Sankoff D, Leduc G, Antoine N, Paquin B, Lang BF, Cedergren R. Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome. Proceedings of the National Academy of Sciences of the United States of America. 89: 6575-9. PMID 1631158 DOI: 10.1073/Pnas.89.14.6575 |
0.491 |
|
| 1992 |
Sankoff D. Efficient optimal decomposition of a sequence into disjoint regions, each matched to some template in an inventory. Mathematical Biosciences. 111: 279-93. PMID 1515748 DOI: 10.1016/0025-5564(92)90075-8 |
0.333 |
|
| 1990 |
Cedergren R, Sankoff D, Abel Y. Relationships from gene sequences. Nature. 345: 484. PMID 2348859 DOI: 10.1038/345484B0 |
0.342 |
|
| 1990 |
Sankoff D, Cedergren R, Abel Y. Genomic divergence through gene rearrangement. Methods in Enzymology. 183: 428-38. PMID 2314285 DOI: 10.1016/0076-6879(90)83028-8 |
0.478 |
|
| 1990 |
Sankoff D. Designer invariants for large phylogenies. Molecular Biology and Evolution. 7: 255-69. PMID 1694257 DOI: 10.1093/Oxfordjournals.Molbev.A040597 |
0.329 |
|
| 1990 |
Drolet S, Sankoff D. Quadratic tree invariants for multivalued characters Journal of Theoretical Biology. 144: 117-129. DOI: 10.1016/S0022-5193(05)80303-0 |
0.313 |
|
| 1990 |
Mongeau M, Sankoff D. Comparison of musical sequences Computers and the Humanities. 24: 161-175. DOI: 10.1007/Bf00117340 |
0.333 |
|
| 1989 |
Gray MW, Cedergren R, Abel Y, Sankoff D. On the evolutionary origin of the plant mitochondrion and its genome. Proceedings of the National Academy of Sciences of the United States of America. 86: 2267-71. PMID 16594021 DOI: 10.1073/Pnas.86.7.2267 |
0.325 |
|
| 1989 |
Sankoff D, Goldstein M. Probabilistic models of genome shuffling. Bulletin of Mathematical Biology. 51: 117-24. PMID 2706396 DOI: 10.1016/S0092-8240(89)80051-5 |
0.44 |
|
| 1989 |
Sankoff D, Rousseau P. Statistical Evidence for Rule Ordering. Language Variation and Change. 1: 1-18. DOI: 10.1017/S0954394500000090 |
0.306 |
|
| 1988 |
Cedergren R, Gray MW, Abel Y, Sankoff D. The evolutionary relationships among known life forms. Journal of Molecular Evolution. 28: 98-112. PMID 3148747 DOI: 10.1007/Bf02143501 |
0.364 |
|
| 1987 |
Day WH, Sankoff D. Computational complexity of inferring phylogenies from chromosome inversion data. Journal of Theoretical Biology. 124: 213-8. PMID 3657194 DOI: 10.1016/S0022-5193(87)80263-1 |
0.33 |
|
| 1987 |
Nicoghosian K, Bigras M, Sankoff D, Cedergren R. Archetypical features in tRNA families Journal of Molecular Evolution. 26: 341-346. PMID 3131535 DOI: 10.1007/Bf02101153 |
0.306 |
|
| 1986 |
Day WHE, Johnson DS, Sankoff D. The computational complexity of inferring rooted phylogenies by parsimony Mathematical Biosciences. 81: 33-42. DOI: 10.1016/0025-5564(86)90161-6 |
0.302 |
|
| 1984 |
Gray MW, Sankoff D, Cedergren RJ. On the evolutionary descent of organisms and organelles: A global phylogeny based on a highly conserved structural core in small subunit ribosomal RNA Nucleic Acids Research. 12: 5837-5852. PMID 6462918 DOI: 10.1093/Nar/12.14.5837 |
0.339 |
|
| 1982 |
Sankoff D, Cedergren RJ, Mckay W. A strategy for sequence phylogeny research Nucleic Acids Research. 10: 421-431. PMID 6917153 DOI: 10.1093/Nar/10.1.421 |
0.348 |
|
| 1980 |
Cedergren RJ, LaRue B, Sankoff D, Lapalme G, Grosjean H. Convergence and minimal mutation criteria for evaluating early events in tRNA evolution Proceedings of the National Academy of Sciences of the United States of America. 77: 2791-2795. PMID 6930666 DOI: 10.1073/Pnas.77.5.2791 |
0.359 |
|
| 1976 |
Cedergren RJ, Sankoff D. Evolutionary origin of 5.8S ribosomal RNA Nature. 260: 74-75. PMID 772443 DOI: 10.1038/260074A0 |
0.32 |
|
| 1976 |
Sankoff D, Cedergren RJ, Lapalme G. Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA Journal of Molecular Evolution. 7: 133-149. PMID 772222 DOI: 10.1007/Bf01732471 |
0.346 |
|
| 1975 |
Sankoff D. Minimal Mutation Trees of Sequences Siam Journal On Applied Mathematics. 28: 35-42. DOI: 10.1137/0128004 |
0.313 |
|
| 1975 |
Chvátal V, Sankoff D. Longest common subsequences of two random sequences Journal of Applied Probability. 12: 306-315. DOI: 10.1017/S0021900200047999 |
0.32 |
|
| 1973 |
Sankoff D, Cedergren RJ. A test for nucleotide sequence homology Journal of Molecular Biology. 77: 159-164. PMID 4203659 DOI: 10.1016/0022-2836(73)90369-0 |
0.338 |
|
| 1973 |
Sankoff D, Morel C, Cedergren RJ. Evolution of 5S RNA and the non randomness of base replacement Nature New Biol.. 245: 232-234. PMID 4201431 DOI: 10.1038/Newbio245232A0 |
0.324 |
|
| 1972 |
Sankoff D. Matching sequences under deletion-insertion constraints Proceedings of the National Academy of Sciences of the United States of America. 69: 4-6. PMID 4500555 DOI: 10.1073/Pnas.69.1.4 |
0.351 |
|
| 1967 |
Sankoff D, Dawson DA. A packing problem for measurable sets Canadian Journal of Mathematics. 19: 749-756. DOI: 10.4153/Cjm-1967-068-X |
0.46 |
|
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