| Year |
Citation |
Score |
| 2020 |
Bui NHB, Napoli M, Davis AJ, Abbas HA, Rajapakshe K, Coarfa C, Flores ER. Spatiotemporal regulation of ∆Np63 by TGFβ-regulated miRNAs is essential for cancer metastasis. Cancer Research. PMID 32312834 DOI: 10.1158/0008-5472.Can-19-2733 |
0.314 |
|
| 2020 |
Call SG, Duren RP, Panigrahi AK, Nguyen L, Freire PR, Grimm SL, Coarfa C, Conneely OM. Targeting Oncogenic Super Enhancers in MYC-Dependent AML Using a Small Molecule Activator of NR4A Nuclear Receptors. Scientific Reports. 10: 2851. PMID 32071334 DOI: 10.1038/S41598-020-59469-3 |
0.32 |
|
| 2019 |
Hall CL, Gurha P, Sabater-Molina M, Asimaki A, Futema M, Lovering RC, Suárez MP, Aguilera B, Molina P, Zorio E, Coarfa C, Robertson MJ, Cheedipudi SM, Ng KE, Delaney P, et al. RNA sequencing-based transcriptome profiling of cardiac tissue implicates novel putative disease mechanisms in FLNC-associated arrhythmogenic cardiomyopathy. International Journal of Cardiology. PMID 31843279 DOI: 10.1016/J.Ijcard.2019.12.002 |
0.308 |
|
| 2019 |
Vantaku V, Putluri V, Bader DA, Maity S, Ma J, Arnold JM, Rajapakshe K, Donepudi SR, von Rundstedt FC, Devarakonda V, Dubrulle J, Karanam B, McGuire SE, Stossi F, Jain AK, ... Coarfa C, et al. Epigenetic loss of AOX1 expression via EZH2 leads to metabolic deregulations and promotes bladder cancer progression. Oncogene. PMID 31383940 DOI: 10.1038/S41388-019-0902-7 |
0.313 |
|
| 2019 |
Hai L, Szwarc MM, Lonard DM, Rajapakshe K, Perera D, Coarfa C, Ittmann M, Fernandez-Valdivia R, Lydon JP. Short-term RANKL exposure initiates a neoplastic transcriptional program in the basal epithelium of the murine salivary gland. Cytokine. 123: 154745. PMID 31226438 DOI: 10.1016/J.Cyto.2019.154745 |
0.337 |
|
| 2019 |
Hu Q, Ye Y, Chan LC, Li Y, Liang K, Lin A, Egranov SD, Zhang Y, Xia W, Gong J, Pan Y, Chatterjee SS, Yao J, Evans KW, Nguyen TK, ... ... Coarfa C, et al. Oncogenic lncRNA downregulates cancer cell antigen presentation and intrinsic tumor suppression. Nature Immunology. PMID 31160797 DOI: 10.1038/S41590-019-0400-7 |
0.304 |
|
| 2019 |
Kaochar S, Ittmann M, Robertson M, Wang J, Skapura D, Davis C, Ehli E, Freedman M, Coarfa C, O'Malley B, Mitsiades N. Abstract 1565: A novel therapeutic target in lethal prostate cancer in African American males Cancer Research. 79: 1565-1565. DOI: 10.1158/1538-7445.Am2019-1565 |
0.335 |
|
| 2018 |
Szwarc MM, Kommagani R, Putluri V, Dubrulle J, Stossi F, Mancini MA, Coarfa C, Lanz RB, Putluri N, DeMayo FJ, Lydon JP, O'Malley BW. Steroid Receptor Coactivator-2 Controls the Pentose Phosphate Pathway through RPIA in Human Endometrial Cancer Cells. Scientific Reports. 8: 13134. PMID 30177747 DOI: 10.1038/S41598-018-31372-Y |
0.322 |
|
| 2018 |
Xing Z, Zhang Y, Liang K, Yan L, Xiang Y, Li C, Hu Q, Jin F, Putluri V, Putluri N, Coarfa C, Sreekumar A, Park PK, Nguyen TK, Wang S, et al. Expression of long non-coding RNA YIYA promotes glycolysis in breast cancer. Cancer Research. PMID 29967256 DOI: 10.1158/0008-5472.Can-17-0385 |
0.314 |
|
| 2018 |
Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, et al. Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas. Cell Reports. 23: 194-212.e6. PMID 29617660 DOI: 10.1016/J.Celrep.2018.03.063 |
0.303 |
|
| 2018 |
Dasgupta S, Rajapakshe K, Zhu B, Nikolai BC, Yi P, Putluri N, Choi JM, Jung SY, Coarfa C, Westbrook TF, Zhang XH, Foulds CE, Tsai SY, Tsai MJ, O'Malley BW. Metabolic enzyme PFKFB4 activates transcriptional coactivator SRC-3 to drive breast cancer. Nature. PMID 29615789 DOI: 10.1038/S41586-018-0018-1 |
0.314 |
|
| 2018 |
Kaochar S, Dong J, Torres M, Rajapakshe K, Nikolos F, Davis CM, Ehli EA, Coarfa C, Mitsiades N, Poulaki V. ICG-001 Exerts Potent Anticancer Activity Against Uveal Melanoma Cells. Investigative Ophthalmology & Visual Science. 59: 132-143. PMID 29332125 DOI: 10.1167/Iovs.17-22454 |
0.303 |
|
| 2017 |
Vantaku V, Donepudi SR, Ambati CR, Jin F, Putluri V, Nguyen K, Rajapakshe K, Coarfa C, Battula VL, Lotan Y, Putluri N. Expression of ganglioside GD2, reprogram the lipid metabolism and EMT phenotype in bladder cancer. Oncotarget. 8: 95620-95631. PMID 29221154 DOI: 10.18632/Oncotarget.21038 |
0.309 |
|
| 2017 |
Abbas H, Bao Bui NH, Rajapakshe K, Wong J, Gunaratne P, Tsai KY, Coarfa C, Flores ER. Distinct TP63 isoform-driven transcriptional signatures predict tumor progression and clinical outcomes. Cancer Research. PMID 29180475 DOI: 10.1158/0008-5472.Can-17-1803 |
0.348 |
|
| 2017 |
Fujita J, Freire P, Coarfa C, Benham AL, Gunaratne P, Schneider MD, Dejosez M, Zwaka TP. Ronin Governs Early Heart Development by Controlling Core Gene Expression Programs. Cell Reports. 21: 1562-1573. PMID 29117561 DOI: 10.1016/J.Celrep.2017.10.036 |
0.32 |
|
| 2017 |
White MA, Lin C, Rajapakshe K, Dong J, Shi Y, Tsouko E, Mukhopadhyay R, Jasso D, Dawood W, Coarfa C, Frigo DE. Glutamine Transporters are Targets of Multiple Oncogenic Signaling Pathways in Prostate Cancer. Molecular Cancer Research : McR. PMID 28507054 DOI: 10.1158/1541-7786.Mcr-16-0480 |
0.316 |
|
| 2017 |
Johnson SAS, Lin JJ, Walkey CJ, Leathers MP, Coarfa C, Johnson DL. Elevated TATA-binding protein expression drives vascular endothelial growth factor expression in colon cancer. Oncotarget. PMID 28415573 DOI: 10.18632/Oncotarget.16384 |
0.312 |
|
| 2016 |
Su X, Napoli M, Abbas HA, Venkatanarayan A, Bui NH, Coarfa C, Gi YJ, Kittrell F, Gunaratne PH, Medina D, Rosen JM, Behbod F, Flores ER. TAp63 suppresses mammary tumorigenesis through regulation of the Hippo pathway. Oncogene. PMID 27869165 DOI: 10.1038/Onc.2016.388 |
0.313 |
|
| 2016 |
Basu-Roy U, Han E, Rattanakorn K, Gadi A, Verma N, Maurizi G, Gunaratne PH, Coarfa C, Kennedy OD, Garabedian MJ, Basilico C, Mansukhani A. PPARγ agonists promote differentiation of cancer stem cells by restraining YAP transcriptional activity. Oncotarget. PMID 27528232 DOI: 10.18632/Oncotarget.11273 |
0.329 |
|
| 2016 |
Shivanna B, Maity S, Zhang S, Patel A, Jiang W, Wang L, Welty SE, Belmont J, Coarfa C, Moorthy B. Gene Expression Profiling Identifies Cell Proliferation and Inflammation as the Predominant Pathways Regulated by Aryl hydrocarbon Receptor in Primary Human Fetal Lung Cells Exposed to Hyperoxia. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 27103661 DOI: 10.1093/Toxsci/Kfw071 |
0.315 |
|
| 2016 |
Lloyd SM, Gohlke J, Basu S, Bhowmik S, Putluri V, Krishnapurnam R, Rajapakshe K, Coarfa C, Guha N, Deepak S, Padmanabhan A, Sayeeduddin M, Castro P, Ittmann M, Palapattu G, et al. Abstract A65: An integromics approach identifies immune escape as a potential mechanism for prostate cancer disparities Cancer Epidemiology, Biomarkers & Prevention. 25. DOI: 10.1158/1538-7755.Disp15-A65 |
0.312 |
|
| 2016 |
Abbas H, Rajapakshe K, Wong J, Bui NHB, Gunaratne P, Tsai K, Coarfa C, Flores E. Abstract LB-321: TP63 isoforms regulate distinct and cooperative transcriptional signatures that drive cancer progression and predict clinical outcomes Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-321 |
0.335 |
|
| 2015 |
Thomas AL, Coarfa C, Qian J, Wilkerson JJ, Rajapakshe K, Krett NL, Gunaratne PH, Rosen ST. Identification of potential glucocorticoid receptor therapeutic targets in multiple myeloma. Nuclear Receptor Signaling. 13: e006. PMID 26715915 DOI: 10.1621/Nrs.13006 |
0.321 |
|
| 2015 |
Kannan K, Kordestani GK, Galagoda A, Coarfa C, Yen L. Aberrant MUC1-TRIM46-KRTCAP2 Chimeric RNAs in High-Grade Serous Ovarian Carcinoma. Cancers. 7: 2083-93. PMID 26492273 DOI: 10.3390/Cancers7040878 |
0.316 |
|
| 2015 |
Jonsson P, Coarfa C, Mesmar F, Raz T, Rajapakshe K, Thompson JF, Gunaratne PH, Williams C. Single-molecule sequencing reveals estrogen-regulated clinically relevant lncRNAs in breast cancer. Molecular Endocrinology (Baltimore, Md.). me20151153. PMID 26426411 DOI: 10.1210/Me.2015-1153 |
0.336 |
|
| 2015 |
Eedunuri VK, Rajapakshe K, Fiskus W, Geng C, Chew SA, Foley C, Shah SS, Shou J, Mohamed JS, Coarfa C, O'Malley BW, Mitsiades N. miR-137 Targets p160 Steroid Receptor Coactivators SRC1, SRC2, and SRC3 and Inhibits Cell Proliferation. Molecular Endocrinology (Baltimore, Md.). 29: 1170-83. PMID 26066330 DOI: 10.1210/Me.2015-1080 |
0.324 |
|
| 2015 |
Dasgupta S, Putluri N, Long W, Zhang B, Wang J, Kaushik AK, Arnold JM, Bhowmik SK, Stashi E, Brennan CA, Rajapakshe K, Coarfa C, Mitsiades N, Ittmann MM, Chinnaiyan AM, et al. Coactivator SRC-2-dependent metabolic reprogramming mediates prostate cancer survival and metastasis. The Journal of Clinical Investigation. 125: 1174-88. PMID 25664849 DOI: 10.1172/Jci76029 |
0.316 |
|
| 2015 |
Bliss-Moreau M, Coarfa C, Gunaratne PH, Guitart J, Krett NL, Rosen ST. Identification of p38β as a therapeutic target for the treatment of Sézary syndrome. The Journal of Investigative Dermatology. 135: 599-608. PMID 25148579 DOI: 10.1038/Jid.2014.367 |
0.309 |
|
| 2015 |
Bhardwaj A, Tachibana K, Ganesan N, Pan Y, Rajapakshi K, Coarfa C, Gunaratne PH, Bedrosian I. Abstract 3982: Targeting of miRNA networks for prevention of basal-like breast cancers Cancer Research. 75: 3982-3982. DOI: 10.1158/1538-7445.Am2015-3982 |
0.323 |
|
| 2015 |
Napoli M, Venkatanarayan A, Raulji P, Abbas HA, Norton W, Sood AK, Lopez-Berestein G, Tsai KY, Coarfa C, Gunaratne PH, Flores ER. Abstract 3975: Pharmacologic inhibition of the ΔNp63/DGCR8 axis as a novel therapeutic strategy for p53-deficient and mutant tumors Cancer Research. 75: 3975-3975. DOI: 10.1158/1538-7445.Am2015-3975 |
0.312 |
|
| 2015 |
Chitsazzadeh V, Coarfa C, Nguyen TH, Joseph AK, Gunaratne P, Shen L, Yao H, Xiao W, Su X, Drummond J, Wheeler D, Flores ER, Tsai KY. Abstract 1920: Novel molecular targets for chemoprevention of squamous cell carcinoma Cancer Research. 75: 1920-1920. DOI: 10.1158/1538-7445.Am2015-1920 |
0.326 |
|
| 2014 |
Coarfa C, Pichot C, Jackson A, Tandon A, Amin V, Raghuraman S, Paithankar S, Lee AV, McGuire SE, Milosavljevic A. Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools. Bmc Bioinformatics. 15: S2. PMID 25080362 DOI: 10.1186/1471-2105-15-S7-S2 |
0.319 |
|
| 2014 |
Kannan K, Coarfa C, Rajapakshe K, Hawkins SM, Matzuk MM, Milosavljevic A, Yen L. CDKN2D-WDFY2 is a cancer-specific fusion gene recurrent in high-grade serous ovarian carcinoma. Plos Genetics. 10: e1004216. PMID 24675677 DOI: 10.1371/Journal.Pgen.1004216 |
0.319 |
|
| 2014 |
Motamed M, Rajapakshe KI, Hartig SM, Coarfa C, Moses RE, Lonard DM, O'Malley BW. Steroid receptor coactivator 1 is an integrator of glucose and NAD+/NADH homeostasis. Molecular Endocrinology (Baltimore, Md.). 28: 395-405. PMID 24438340 DOI: 10.1210/Me.2013-1404 |
0.319 |
|
| 2014 |
Agarwal S, Rajapakshe K, Coarfa C, Shohet J. Abstract A26: MYCN modifies p53 transcriptional responses to oppose apoptosis and activate cell cycle progression Cancer Research. 74. DOI: 10.1158/1538-7445.Pedcan-A26 |
0.314 |
|
| 2013 |
Geng C, He B, Xu L, Barbieri CE, Eedunuri VK, Chew SA, Zimmermann M, Bond R, Shou J, Li C, Blattner M, Lonard DM, Demichelis F, Coarfa C, Rubin MA, et al. Prostate cancer-associated mutations in speckle-type POZ protein (SPOP) regulate steroid receptor coactivator 3 protein turnover. Proceedings of the National Academy of Sciences of the United States of America. 110: 6997-7002. PMID 23559371 DOI: 10.1073/Pnas.1304502110 |
0.31 |
|
| 2013 |
Bliss-Moreau M, Coarfa C, Xiao W, Gunaratne P, Krett NL, Rosen ST. Synergy Of Small-Molecule Inhibitors In Cutaneous T-Cell Lymphoma Cells: A Discovery Tool To Define New Therapeutic Targets In T-Cell Receptor (TCR) Signaling Pathways Blood. 122: 4327-4327. DOI: 10.1182/Blood.V122.21.4327.4327 |
0.321 |
|
| 2013 |
Herschkowitz JI, Coarfa C, Prat A, Toneff MJ, Hoadley KA, Dinger ME, Mattick JS, Mani SA, Perou CM, Rosen JM. Abstract A039: The role of long noncoding RNAs in epithelial to mesenchymal transition and cancer stem cells Molecular Cancer Research. 11. DOI: 10.1158/1557-3125.Advbc-A039 |
0.32 |
|
| 2013 |
Chitsazzadeh V, Xiao W, Gunaratne P, Coarfa C, Su X, Nguyen TH, Thomas VD, Joseph AK, Flores ER, Tsai KY. Abstract 815: Integrated genomic analysis of cutaneous squamous cell carcinoma progression. Cancer Research. 73: 815-815. DOI: 10.1158/1538-7445.Am2013-815 |
0.303 |
|
| 2009 |
Hampton OA, Den Hollander P, Miller CA, Delgado DA, Li J, Coarfa C, Harris RA, Richards S, Scherer SE, Muzny DM, Gibbs RA, Lee AV, Milosavljevic A. A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. Genome Research. 19: 167-77. PMID 19056696 DOI: 10.1101/Gr.080259.108 |
0.31 |
|
| 2009 |
Hollander Pd, Osadchey I, Hampton O, Coarfa C, Milosavljevic A, Lee A. Evolution of Genomic Diversity in the Breast Cancer Cell Line MCF-7. Cancer Research. 69: 3171-3171. DOI: 10.1158/0008-5472.Sabcs-09-3171 |
0.307 |
|
| 2007 |
Coarfa C, Mellor-Crummey J, Froyd N, Dotsenko Y. Scalability analysis of SPMD codes using expectations Proceedings of the International Conference On Supercomputing. 13-22. DOI: 10.1145/1274971.1274976 |
0.763 |
|
| 2006 |
Dotsenko Y, Coarfa C, Nakhleh L, Mellor-Crummey J, Roshan U. PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction. International Journal of Bioinformatics Research and Applications. 2: 407-19. PMID 18048181 DOI: 10.1504/Ijbra.2006.011039 |
0.74 |
|
| 2006 |
Coarfa C, Dotsenko Y, Mellor-Crummey J. Experiences with Sweep3D implementations in Co-array Fortran Journal of Supercomputing. 36: 101-121. DOI: 10.1007/S11227-006-7952-7 |
0.764 |
|
| 2005 |
Coarfa C, Dotsenko Y, Mellor-Crummey J, Cantonnet F, Ei-Ghazawi T, Mohanti A, Yao Y, Chavarría-Miranda D. An evaluation of global address space languages: Co-array fortran and Unified Parallel C Proceedings of the Acm Sigplan Symposium On Principles and Practice of Parallel Programming, Ppopp. 36-47. DOI: 10.1145/1065944.1065950 |
0.766 |
|
| 2005 |
Coarfa C, Dotsenko Y, Mellor-Crummey J, Nakhleh L, Roshan U. PRec-I-DCM3: A parallel framework for fast and accurate large scale phylogeny reconstruction Proceedings of the International Conference On Parallel and Distributed Systems - Icpads. 2: 346-350. DOI: 10.1109/ICPADS.2005.240 |
0.746 |
|
| 2005 |
Dotsenko Y, Coarfa C, Mellor-Crummey J, Chavarría-Miranda D. Experiences with Co-array Fortran on hardware shared memory platforms Lecture Notes in Computer Science. 3602: 332-347. |
0.758 |
|
| 2004 |
Dotsenko Y, Coarfa C, Mellor-Crummey J. A multi-platform Co-array Fortran compiler Parallel Architectures and Compilation Techniques - Conference Proceedings, Pact. 29-40. DOI: 10.1109/PACT.2004.1342539 |
0.765 |
|
| 2004 |
Coarfa C, Dotsenko Y, Eckhardt J, Mellor-Crummey J. Co-array fortran performance and potential: An NPB experimental study Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2958: 177-193. |
0.768 |
|
| Show low-probability matches. |