| Year |
Citation |
Score |
| 2023 |
Grandchamp A, Kühl L, Lebherz M, Brüggemann K, Parsch J, Bornberg-Bauer E. Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in . Genome Research. 33: 872-890. PMID 37442576 DOI: 10.1101/gr.277482.122 |
0.329 |
|
| 2023 |
Heames B, Buchel F, Aubel M, Tretyachenko V, Loginov D, Novák P, Lange A, Bornberg-Bauer E, Hlouchová K. Experimental characterization of de novo proteins and their unevolved random-sequence counterparts. Nature Ecology & Evolution. PMID 37024625 DOI: 10.1038/s41559-023-02010-2 |
0.303 |
|
| 2022 |
Coban A, Bornberg-Bauer E, Kemena C. Domain Evolution of Vertebrate Blood Coagulation Cascade Proteins. Journal of Molecular Evolution. PMID 36181519 DOI: 10.1007/s00239-022-10071-3 |
0.3 |
|
| 2021 |
Rivard EL, Ludwig AG, Patel PH, Grandchamp A, Arnold SE, Berger A, Scott EM, Kelly BJ, Mascha GC, Bornberg-Bauer E, Findlay GD. A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. Plos Genetics. 17: e1009787. PMID 34478447 DOI: 10.1371/journal.pgen.1009787 |
0.312 |
|
| 2021 |
Lange A, Patel PH, Heames B, Damry AM, Saenger T, Jackson CJ, Findlay GD, Bornberg-Bauer E. Structural and functional characterization of a putative de novo gene in Drosophila. Nature Communications. 12: 1667. PMID 33712569 DOI: 10.1038/s41467-021-21667-6 |
0.348 |
|
| 2021 |
Bornberg-Bauer E, Hlouchova K, Lange A. Structure and function of naturally evolved de novo proteins. Current Opinion in Structural Biology. 68: 175-183. PMID 33567396 DOI: 10.1016/j.sbi.2020.11.010 |
0.326 |
|
| 2020 |
Dowling D, Schmitz JF, Bornberg-Bauer E. Stochastic Gain and Loss of Novel Transcribed Open Reading Frames in the Human Lineage. Genome Biology and Evolution. 12: 2183-2195. PMID 33210146 DOI: 10.1093/gbe/evaa194 |
0.33 |
|
| 2020 |
Schmitz JF, Chain FJJ, Bornberg-Bauer E. Evolution of novel genes in three-spined stickleback populations. Heredity. PMID 32499660 DOI: 10.1038/S41437-020-0319-7 |
0.416 |
|
| 2020 |
Gstöttl C, Stoldt M, Jongepier E, Bornberg-Bauer E, Feldmeyer B, Heinze J, Foitzik S. Comparative analyses of caste, sex, and developmental stage-specific transcriptomes in two ants. Ecology and Evolution. 10: 4193-4203. PMID 32489589 DOI: 10.1002/Ece3.6187 |
0.326 |
|
| 2020 |
Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, et al. Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera. Genome Biology and Evolution. PMID 32442304 DOI: 10.1093/Gbe/Evaa106 |
0.403 |
|
| 2020 |
Heames B, Schmitz J, Bornberg-Bauer E. A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila. Journal of Molecular Evolution. PMID 32253450 DOI: 10.1007/S00239-020-09939-Z |
0.4 |
|
| 2020 |
Dohmen E, Klasberg S, Bornberg-Bauer E, Perrey S, Kemena C. The modular nature of protein evolution: domain rearrangement rates across eukaryotic life. Bmc Evolutionary Biology. 20: 30. PMID 32059645 DOI: 10.1186/S12862-020-1591-0 |
0.404 |
|
| 2020 |
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, ... ... Bornberg-Bauer E, et al. Gene content evolution in the arthropods. Genome Biology. 21: 15. PMID 31969194 DOI: 10.1186/S13059-019-1925-7 |
0.401 |
|
| 2019 |
Yang G, Anderson DW, Baier F, Dohmen E, Hong N, Carr PD, Kamerlin SCL, Jackson CJ, Bornberg-Bauer E, Tokuriki N. Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme. Nature Chemical Biology. 15: 1120-1128. PMID 31636435 DOI: 10.1038/S41589-019-0386-3 |
0.334 |
|
| 2019 |
Hartke J, Schell T, Jongepier E, Schmidt H, Sprenger PP, Paule J, Bornberg-Bauer E, Schmitt T, Menzel F, Pfenninger M, Feldmeyer B. Hybrid genome assembly of a neotropical mutualistic ant. Genome Biology and Evolution. PMID 31329228 DOI: 10.1093/Gbe/Evz159 |
0.393 |
|
| 2019 |
Huang Y, Feulner PGD, Eizaguirre C, Lenz TL, Bornberg-Bauer E, Milinski M, Reusch TBH, Chain FJJ. Genome-wide genotype-expression relationships reveal both copy number and single nucleotide differentiation contribute to differential gene expression between stickleback ecotypes. Genome Biology and Evolution. PMID 31298693 DOI: 10.1093/Gbe/Evz148 |
0.375 |
|
| 2019 |
Kemena C, Dohmen E, Bornberg-Bauer E. DOGMA: a web server for proteome and transcriptome quality assessment. Nucleic Acids Research. PMID 31076763 DOI: 10.1093/Nar/Gkz366 |
0.353 |
|
| 2019 |
Bornberg-Bauer E, Heames B. Becoming a de novo gene. Nature Ecology & Evolution. PMID 30858587 DOI: 10.1038/S41559-019-0845-Y |
0.404 |
|
| 2019 |
Kemena C, Bornberg-Bauer E. A Roadmap to Domain Based Proteomics. Methods in Molecular Biology (Clifton, N.J.). 1851: 287-300. PMID 30298404 DOI: 10.1007/978-1-4939-8736-8_16 |
0.441 |
|
| 2018 |
Kurafeiski JD, Pinto P, Bornberg-Bauer E. Evolutionary potential of cis-regulatory mutations to cause rapid changes in transcription factor binding. Genome Biology and Evolution. PMID 30597011 DOI: 10.1093/Gbe/Evy269 |
0.319 |
|
| 2018 |
Kleppe AS, Bornberg-Bauer E. Robustness by intrinsically disordered C-termini and translational readthrough. Nucleic Acids Research. PMID 30247639 DOI: 10.1093/Nar/Gky778 |
0.383 |
|
| 2018 |
Schmitz JF, Ullrich KK, Bornberg-Bauer E. Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover. Nature Ecology & Evolution. PMID 30201962 DOI: 10.1038/S41559-018-0639-7 |
0.426 |
|
| 2018 |
Bornberg-Bauer E, Harrison MC, Jongepier E. The first cockroach genome and its significance for understanding development and the evolution of insect eusociality. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 330: 251-253. PMID 30168666 DOI: 10.1002/Jez.B.22826 |
0.361 |
|
| 2018 |
Kremer LPM, Korb J, Bornberg-Bauer E. Reconstructed evolution of insulin receptors in insects reveals duplications in early insects and cockroaches. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 29888542 DOI: 10.1002/Jez.B.22809 |
0.354 |
|
| 2018 |
Jongepier E, Kemena C, Lopez-Ezquerra A, Belles X, Bornberg-Bauer E, Korb J. Remodeling of the juvenile hormone pathway through caste-biased gene expression and positive selection along a gradient of termite eusociality. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 29845724 DOI: 10.1002/Jez.B.22805 |
0.326 |
|
| 2018 |
Klasberg S, Bitard-Feildel T, Callebaut I, Bornberg-Bauer E. Origins and Structural Properties of Novel and De Novo Protein Domains During Insect Evolution. The Febs Journal. PMID 29802682 DOI: 10.1111/febs.14504 |
0.315 |
|
| 2018 |
Harrison MC, Jongepier E, Robertson HM, Arning N, Bitard-Feildel T, Chao H, Childers CP, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes DST, ... Bornberg-Bauer E, et al. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology & Evolution. PMID 29403074 DOI: 10.1038/S41559-017-0459-1 |
0.4 |
|
| 2017 |
Lopez-Ezquerra A, Harrison MC, Bornberg-Bauer E. Comparative analysis of lincRNA in insect species. Bmc Evolutionary Biology. 17: 155. PMID 28673235 DOI: 10.1186/S12862-017-0985-0 |
0.399 |
|
| 2017 |
Schmitz JF, Bornberg-Bauer E. Fact or fiction: updates on how protein-coding genes might emerge de novo from previously non-coding DNA. F1000research. 6: 57. PMID 28163910 DOI: 10.12688/F1000Research.10079.1 |
0.384 |
|
| 2017 |
Gubala AM, Schmitz JF, Kearns MJ, Vinh TT, Bornberg-Bauer E, Wolfner MF, Findlay GD. The goddard and saturn genes are essential for Drosophila male fertility and may have arisen de novo. Molecular Biology and Evolution. PMID 28104747 DOI: 10.1093/Molbev/Msx057 |
0.377 |
|
| 2016 |
Elsner D, Kremer LP, Arning N, Bornberg-Bauer E. Chapter 6. Comparative genomic approaches to investigate molecular traits specific to social insects. Current Opinion in Insect Science. 16: 87-94. PMID 27720056 DOI: 10.1016/J.Cois.2016.05.016 |
0.322 |
|
| 2016 |
Schüler A, Bornberg-Bauer E. Evolution of Protein Domain Repeats in Metazoa. Molecular Biology and Evolution. PMID 27671125 DOI: 10.1093/Molbev/Msw194 |
0.448 |
|
| 2016 |
Schmitz JF, Zimmer F, Bornberg-Bauer E. Mechanisms of transcription factor evolution in Metazoa. Nucleic Acids Research. PMID 27288445 DOI: 10.1093/Nar/Gkw492 |
0.347 |
|
| 2016 |
Dohmen E, Kremer LP, Bornberg-Bauer E, Kemena C. DOGMA: Domain-based transcriptome and proteome quality assessment. Bioinformatics (Oxford, England). PMID 27153665 DOI: 10.1093/Bioinformatics/Btw231 |
0.355 |
|
| 2016 |
Olsen JL, Rouzé P, Verhelst B, Lin YC, Bayer T, Collen J, Dattolo E, De Paoli E, Dittami S, Maumus F, Michel G, Kersting A, Lauritano C, Lohaus R, Töpel M, ... Bornberg-Bauer E, et al. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea. Nature. PMID 26814964 DOI: 10.1038/Nature16548 |
0.391 |
|
| 2016 |
Huang Y, Chain FJ, Panchal M, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg-Bauer E, Reusch TB, Milinski M, Feulner PG. Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks. Molecular Ecology. PMID 26749022 DOI: 10.1111/Mec.13520 |
0.324 |
|
| 2015 |
Bornberg-Bauer E, Schmitz J, Heberlein M. Emergence of de novo proteins from 'dark genomic matter' by 'grow slow and moult'. Biochemical Society Transactions. 43: 867-73. PMID 26517896 DOI: 10.1042/Bst20150089 |
0.437 |
|
| 2015 |
Smith CR, Helms Cahan S, Kemena C, Brady SG, Yang W, Bornberg-Bauer E, Eriksson T, Gadau J, Helmkampf M, Gotzek D, Okamoto Miyakawa M, Suarez AV, Mikheyev A. How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites. Molecular Biology and Evolution. 32: 2919-31. PMID 26226984 DOI: 10.1093/Molbev/Msv165 |
0.36 |
|
| 2015 |
Feulner PG, Chain FJ, Panchal M, Huang Y, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg-Bauer E, Reusch TB, Milinski M. Correction: Genomics of Divergence along a Continuum of Parapatric Population Differentiation. Plos Genetics. 11: e1005414. PMID 26226517 DOI: 10.1371/Journal.Pgen.1005414 |
0.321 |
|
| 2015 |
Schüler A, Schmitz G, Reft A, Özbek S, Thurm U, Bornberg-Bauer E. The rise and fall of TRP-N, an ancient family of mechanogated ion channels, in Metazoa. Genome Biology and Evolution. PMID 26100409 DOI: 10.1093/Gbe/Evv091 |
0.329 |
|
| 2015 |
Masri L, Branca A, Sheppard AE, Papkou A, Laehnemann D, Guenther PS, Prahl S, Saebelfeld M, Hollensteiner J, Liesegang H, Brzuszkiewicz E, Daniel R, Michiels NK, Schulte RD, Kurtz J, ... Bornberg-Bauer E, et al. Host-Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes. Plos Biology. 13: e1002169. PMID 26042786 DOI: 10.1371/Journal.Pbio.1002169 |
0.353 |
|
| 2015 |
Bitard-Feildel T, Kemena C, Greenwood JM, Bornberg-Bauer E. Domain similarity based orthology detection. Bmc Bioinformatics. 16: 154. PMID 25968113 DOI: 10.1186/S12859-015-0570-8 |
0.402 |
|
| 2015 |
Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, et al. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology. 16: 76. PMID 25908251 DOI: 10.1186/S13059-015-0623-3 |
0.352 |
|
| 2015 |
Bitard-Feildel T, Heberlein M, Bornberg-Bauer E, Callebaut I. Detection of orphan domains in Drosophila using "hydrophobic cluster analysis". Biochimie. PMID 25736992 DOI: 10.1016/J.Biochi.2015.02.019 |
0.441 |
|
| 2015 |
Feulner PG, Chain FJ, Panchal M, Huang Y, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg-Bauer E, Reusch TB, Milinski M. Genomics of divergence along a continuum of parapatric population differentiation. Plos Genetics. 11: e1004966. PMID 25679225 DOI: 10.1371/Journal.Pgen.1004966 |
0.399 |
|
| 2015 |
Kemena C, Bitard-Feildel T, Bornberg-Bauer E. MDAT- Aligning multiple domain arrangements. Bmc Bioinformatics. 16: 19. PMID 25626688 DOI: 10.1186/S12859-014-0442-7 |
0.397 |
|
| 2015 |
Kersting AR, Mizrachi E, Bornberg-Bauer E, Myburg AA. Protein domain evolution is associated with reproductive diversification and adaptive radiation in the genus Eucalyptus. The New Phytologist. 206: 1328-36. PMID 25494981 DOI: 10.1111/Nph.13211 |
0.381 |
|
| 2014 |
Chain FJ, Feulner PG, Panchal M, Eizaguirre C, Samonte IE, Kalbe M, Lenz TL, Stoll M, Bornberg-Bauer E, Milinski M, Reusch TB. Extensive copy-number variation of young genes across stickleback populations. Plos Genetics. 10: e1004830. PMID 25474574 DOI: 10.1371/Journal.Pgen.1004830 |
0.395 |
|
| 2014 |
Haase D, Rieger JK, Witten A, Stoll M, Bornberg-Bauer E, Kalbe M, Reusch TB. Specific gene expression responses to parasite genotypes reveal redundancy of innate immunity in vertebrates. Plos One. 9: e108001. PMID 25254967 DOI: 10.1371/Journal.Pone.0108001 |
0.324 |
|
| 2014 |
Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, ... Bornberg-Bauer E, et al. The genome of Eucalyptus grandis. Nature. 510: 356-62. PMID 24919147 DOI: 10.1038/Nature13308 |
0.402 |
|
| 2014 |
Terrapon N, Li C, Robertson HM, Ji L, Meng X, Booth W, Chen Z, Childers CP, Glastad KM, Gokhale K, Gowin J, Gronenberg W, Hermansen RA, Hu H, Hunt BG, ... Bornberg-Bauer E, et al. Molecular traces of alternative social organization in a termite genome. Nature Communications. 5: 3636. PMID 24845553 DOI: 10.1038/Ncomms4636 |
0.391 |
|
| 2014 |
Franssen SU, Gu J, Winters G, Huylmans AK, Wienpahl I, Sparwel M, Coyer JA, Olsen JL, Reusch TB, Bornberg-Bauer E. Genome-wide transcriptomic responses of the seagrasses Zostera marina and Nanozostera noltii under a simulated heatwave confirm functional types. Marine Genomics. 15: 65-73. PMID 24703884 DOI: 10.1016/J.Margen.2014.03.004 |
0.354 |
|
| 2014 |
Moore AD, Held A, Terrapon N, Weiner J, Bornberg-Bauer E. DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins. Bioinformatics (Oxford, England). 30: 282-3. PMID 24222210 DOI: 10.1093/Bioinformatics/Btt640 |
0.361 |
|
| 2014 |
Terrapon N, Weiner J, Grath S, Moore AD, Bornberg-Bauer E. Rapid similarity search of proteins using alignments of domain arrangements. Bioinformatics (Oxford, England). 30: 274-81. PMID 23828785 DOI: 10.1093/Bioinformatics/Btt379 |
0.404 |
|
| 2013 |
Guo B, Chain FJ, Bornberg-Bauer E, Leder EH, Merilä J. Genomic divergence between nine- and three-spined sticklebacks. Bmc Genomics. 14: 756. PMID 24188282 DOI: 10.1186/1471-2164-14-756 |
0.367 |
|
| 2013 |
Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, ... Bornberg-Bauer E, et al. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Research. 23: 1235-47. PMID 23636946 DOI: 10.1101/Gr.155408.113 |
0.423 |
|
| 2013 |
Bornberg-Bauer E, Albà MM. Dynamics and adaptive benefits of modular protein evolution. Current Opinion in Structural Biology. 23: 459-66. PMID 23562500 DOI: 10.1016/J.Sbi.2013.02.012 |
0.433 |
|
| 2013 |
Moore AD, Grath S, Schüler A, Huylmans AK, Bornberg-Bauer E. Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree. Biochimica Et Biophysica Acta. 1834: 898-907. PMID 23376183 DOI: 10.1016/J.Bbapap.2013.01.007 |
0.437 |
|
| 2013 |
Wissler L, Gadau J, Simola DF, Helmkampf M, Bornberg-Bauer E. Mechanisms and dynamics of orphan gene emergence in insect genomes. Genome Biology and Evolution. 5: 439-55. PMID 23348040 DOI: 10.1093/Gbe/Evt009 |
0.402 |
|
| 2013 |
Feulner PG, Chain FJ, Panchal M, Eizaguirre C, Kalbe M, Lenz TL, Mundry M, Samonte IE, Stoll M, Milinski M, Reusch TB, Bornberg-Bauer E. Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks. Molecular Ecology. 22: 635-49. PMID 22747593 DOI: 10.1111/J.1365-294X.2012.05680.X |
0.381 |
|
| 2012 |
Sikosek T, Bornberg-Bauer E, Chan HS. Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts. Plos Computational Biology. 8: e1002659. PMID 23028272 DOI: 10.1371/Journal.Pcbi.1002659 |
0.407 |
|
| 2012 |
Sikosek T, Chan HS, Bornberg-Bauer E. Escape from Adaptive Conflict follows from weak functional trade-offs and mutational robustness. Proceedings of the National Academy of Sciences of the United States of America. 109: 14888-93. PMID 22927372 DOI: 10.1073/Pnas.1115620109 |
0.409 |
|
| 2012 |
Niehuis O, Hartig G, Grath S, Pohl H, Lehmann J, Tafer H, Donath A, Krauss V, Eisenhardt C, Hertel J, Petersen M, Mayer C, Meusemann K, Peters RS, Stadler PF, ... Bornberg-Bauer E, et al. Genomic and morphological evidence converge to resolve the enigma of Strepsiptera. Current Biology : Cb. 22: 1309-13. PMID 22704986 DOI: 10.1016/J.Cub.2012.05.018 |
0.398 |
|
| 2012 |
Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, et al. The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85. PMID 22528593 DOI: 10.1002/Pro.2071 |
0.409 |
|
| 2012 |
Balasubramanian PG, Beckmann A, Warnken U, Schnölzer M, Schüler A, Bornberg-Bauer E, Holstein TW, Ozbek S. Proteome of Hydra nematocyst. The Journal of Biological Chemistry. 287: 9672-81. PMID 22291027 DOI: 10.1074/Jbc.M111.328203 |
0.311 |
|
| 2012 |
Kersting AR, Bornberg-Bauer E, Moore AD, Grath S. Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution. Genome Biology and Evolution. 4: 316-29. PMID 22250127 DOI: 10.1093/Gbe/Evs004 |
0.468 |
|
| 2012 |
Moore AD, Bornberg-Bauer E. The dynamics and evolutionary potential of domain loss and emergence. Molecular Biology and Evolution. 29: 787-96. PMID 22016574 DOI: 10.1093/Molbev/Msr250 |
0.46 |
|
| 2012 |
Wissler L, Godmann L, Bornberg-Bauer E. Evolutionary dynamics of simple sequence repeats across long evolutionary time scale in genus Drosophila Trends in Evolutionary Biology. 4: 34-44. DOI: 10.4081/Eb.2012.E7 |
0.388 |
|
| 2011 |
Franssen SU, Gu J, Bergmann N, Winters G, Klostermeier UC, Rosenstiel P, Bornberg-Bauer E, Reusch TB. Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species. Proceedings of the National Academy of Sciences of the United States of America. 108: 19276-81. PMID 22084086 DOI: 10.1073/Pnas.1107680108 |
0.349 |
|
| 2011 |
Franssen SU, Shrestha RP, Bräutigam A, Bornberg-Bauer E, Weber AP. Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing. Bmc Genomics. 12: 227. PMID 21569327 DOI: 10.1186/1471-2164-12-227 |
0.36 |
|
| 2011 |
Reineke AR, Bornberg-Bauer E, Gu J. Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes. Nucleic Acids Research. 39: 6029-43. PMID 21470961 DOI: 10.1093/Nar/Gkr179 |
0.39 |
|
| 2011 |
Ernst AM, Rüping B, Jekat SB, Nordzieke S, Reineke AR, Müller B, Bornberg-Bauer E, Prüfer D, Noll GA. The sieve element occlusion gene family in dicotyledonous plants. Plant Signaling & Behavior. 6: 151-3. PMID 21422825 DOI: 10.4161/Psb.6.1.14308 |
0.431 |
|
| 2011 |
Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Favé MJ, Gadau J, Gibson JD, et al. The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. Plos Genetics. 7: e1002007. PMID 21347285 DOI: 10.1371/Journal.Pgen.1002007 |
0.412 |
|
| 2011 |
Wissler L, Codoñer FM, Gu J, Reusch TB, Olsen JL, Procaccini G, Bornberg-Bauer E. Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life. Bmc Evolutionary Biology. 11: 8. PMID 21226908 DOI: 10.1186/1471-2148-11-8 |
0.359 |
|
| 2011 |
Schüler A, Bornberg-Bauer E. The evolution of protein interaction networks. Methods in Molecular Biology (Clifton, N.J.). 696: 273-89. PMID 21063954 DOI: 10.1007/978-1-60761-987-1_17 |
0.358 |
|
| 2010 |
Rüping B, Ernst AM, Jekat SB, Nordzieke S, Reineke AR, Müller B, Bornberg-Bauer E, Prüfer D, Noll GA. Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants. Bmc Plant Biology. 10: 219. PMID 20932300 DOI: 10.1186/1471-2229-10-219 |
0.357 |
|
| 2010 |
Bornberg-Bauer E. Signals: tinkering with domains. Science Signaling. 3: pe31. PMID 20841566 DOI: 10.1126/Scisignal.3139Pe31 |
0.399 |
|
| 2010 |
Bornberg-Bauer E, Huylmans AK, Sikosek T. How do new proteins arise? Current Opinion in Structural Biology. 20: 390-6. PMID 20347587 DOI: 10.1016/J.Sbi.2010.02.005 |
0.472 |
|
| 2010 |
Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, ... Bornberg-Bauer E, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.). 327: 343-8. PMID 20075255 DOI: 10.1126/Science.1178028 |
0.409 |
|
| 2009 |
Wissler L, Dattolo E, Moore AD, Reusch TB, Olsen JL, Migliaccio M, Bornberg-Bauer E, Procaccini G. Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs. Database : the Journal of Biological Databases and Curation. 2009: bap009. PMID 20157482 DOI: 10.1093/Database/Bap009 |
0.395 |
|
| 2008 |
Weiner J, Moore AD, Bornberg-Bauer E. Just how versatile are domains? Bmc Evolutionary Biology. 8: 285. PMID 18854028 DOI: 10.1186/1471-2148-8-285 |
0.355 |
|
| 2008 |
Moore AD, Björklund AK, Ekman D, Bornberg-Bauer E, Elofsson A. Arrangements in the modular evolution of proteins. Trends in Biochemical Sciences. 33: 444-51. PMID 18656364 DOI: 10.1016/J.Tibs.2008.05.008 |
0.442 |
|
| 2008 |
Whitehead DJ, Wilke CO, Vernazobres D, Bornberg-Bauer E. The look-ahead effect of phenotypic mutations. Biology Direct. 3: 18. PMID 18479505 DOI: 10.1186/1745-6150-3-18 |
0.336 |
|
| 2008 |
Schulenburg H, Hoeppner MP, Weiner J, Bornberg-Bauer E. Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans. Immunobiology. 213: 237-50. PMID 18406370 DOI: 10.1016/J.Imbio.2007.12.004 |
0.347 |
|
| 2008 |
Friedrichs F, Henckaerts L, Vermeire S, Kucharzik T, Seehafer T, Möller-Krull M, Bornberg-Bauer E, Stoll M, Weiner J. The Crohn's disease susceptibility gene DLG5 as a member of the CARD interaction network. Journal of Molecular Medicine (Berlin, Germany). 86: 423-32. PMID 18335190 DOI: 10.1007/S00109-008-0307-5 |
0.405 |
|
| 2008 |
Reusch TB, Veron AS, Preuss C, Weiner J, Wissler L, Beck A, Klages S, Kube M, Reinhardt R, Bornberg-Bauer E. Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress. Marine Biotechnology (New York, N.Y.). 10: 297-309. PMID 18239962 DOI: 10.1007/S10126-007-9065-6 |
0.33 |
|
| 2007 |
Wroe R, Chan HS, Bornberg-Bauer E. A structural model of latent evolutionary potentials underlying neutral networks in proteins. Hfsp Journal. 1: 79-87. PMID 19404462 DOI: 10.2976/1.2739116/10.2976/1 |
0.379 |
|
| 2007 |
Amoutzias GD, Pichler EE, Mian N, De Graaf D, Imsiridou A, Robinson-Rechavi M, Bornberg-Bauer E, Robertson DL, Oliver SG. A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. Bmc Systems Biology. 1: 34. PMID 17672894 DOI: 10.1186/1752-0509-1-34 |
0.34 |
|
| 2007 |
Beaussart F, Weiner J, Bornberg-Bauer E. Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN). Bioinformatics (Oxford, England). 23: 1834-6. PMID 17483506 DOI: 10.1093/Bioinformatics/Btm240 |
0.381 |
|
| 2007 |
Amoutzias GD, Veron AS, Weiner J, Robinson-Rechavi M, Bornberg-Bauer E, Oliver SG, Robertson DL. One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity. Molecular Biology and Evolution. 24: 827-35. PMID 17194801 DOI: 10.1093/Molbev/Msl211 |
0.374 |
|
| 2007 |
Veron AS, Kaufmann K, Bornberg-Bauer E. Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins. Molecular Biology and Evolution. 24: 670-8. PMID 17175526 DOI: 10.1093/Molbev/Msl197 |
0.443 |
|
| 2006 |
Gerke M, Bornberg-Bauer E, Jiang X, Fuellen G. Finding common protein interaction patterns across organisms. Evolutionary Bioinformatics Online. 2: 45-52. PMID 19455201 DOI: 10.4137/Ebo.S0 |
0.332 |
|
| 2006 |
Amoutzias GD, Bornberg-Bauer E, Oliver SG, Robertson DL. Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network. Bmc Genomics. 7: 107. PMID 16674813 DOI: 10.1186/1471-2164-7-107 |
0.314 |
|
| 2006 |
Weiner J, Beaussart F, Bornberg-Bauer E. Domain deletions and substitutions in the modular protein evolution. The Febs Journal. 273: 2037-47. PMID 16640566 DOI: 10.1111/j.1742-4658.2006.05220.x |
0.3 |
|
| 2006 |
Weiner J, Bornberg-Bauer E. Evolution of circular permutations in multidomain proteins. Molecular Biology and Evolution. 23: 734-43. PMID 16431849 DOI: 10.1093/Molbev/Msj091 |
0.454 |
|
| 2005 |
Malonek S, Bömke C, Bornberg-Bauer E, Rojas MC, Hedden P, Hopkins P, Tudzynski B. Distribution of gibberellin biosynthetic genes and gibberellin production in the Gibberella fujikuroi species complex. Phytochemistry. 66: 1296-311. PMID 15925394 DOI: 10.1016/J.Phytochem.2005.04.012 |
0.302 |
|
| 2005 |
Weiner J, Thomas G, Bornberg-Bauer E. Rapid motif-based prediction of circular permutations in multi-domain proteins. Bioinformatics (Oxford, England). 21: 932-7. PMID 15788783 DOI: 10.1093/Bioinformatics/Bti085 |
0.434 |
|
| 2005 |
Amoutzias GD, Weiner J, Bornberg-Bauer E. Phylogenetic profiling of protein interaction networks in eukaryotic transcription factors reveals focal proteins being ancestral to hubs. Gene. 347: 247-53. PMID 15777629 DOI: 10.1016/J.Gene.2004.12.031 |
0.407 |
|
| 2005 |
Bornberg-Bauer E, Beaussart F, Kummerfeld SK, Teichmann SA, Weiner J. The evolution of domain arrangements in proteins and interaction networks. Cellular and Molecular Life Sciences : Cmls. 62: 435-45. PMID 15719170 DOI: 10.1007/S00018-004-4416-1 |
0.405 |
|
| 2005 |
Wroe R, Bornberg-Bauer E, Chan HS. Comparing folding codes in simple heteropolymer models of protein evolutionary landscape: robustness of the superfunnel paradigm. Biophysical Journal. 88: 118-31. PMID 15501948 DOI: 10.1529/Biophysj.104.050369 |
0.377 |
|
| 2004 |
Amoutzias GD, Robertson DL, Bornberg-Bauer E. The evolution of protein interaction networks in regulatory proteins. Comparative and Functional Genomics. 5: 79-84. PMID 18629034 DOI: 10.1002/Cfg.365 |
0.357 |
|
| 2004 |
Amoutzias GD, Robertson DL, Bornberg-Bauer E. The evolution of protein interaction networks in regulatory proteins: Conference Reviews Comparative and Functional Genomics. 5: 79-84. DOI: 10.1002/Cfg.V5:1 |
0.353 |
|
| 2003 |
Gerrard DT, Bornberg-Bauer E. DoMosaic - Analysis of the Mosaic-like domain arrangements in proteins Informatica (Ljubljana). 27: 15-20. |
0.701 |
|
| 2002 |
Cui Y, Wong WH, Bornberg-Bauer E, Chan HS. Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes. Proceedings of the National Academy of Sciences of the United States of America. 99: 809-14. PMID 11805332 DOI: 10.1073/Pnas.022240299 |
0.356 |
|
| 2002 |
Bornberg-Bauer E. Randomness, structural uniqueness, modularity and neutral evolution in sequence space of model proteins Zeitschrift Fur Physikalische Chemie. 216: 139-154. DOI: 10.1524/Zpch.2002.216.2.139 |
0.381 |
|
| 1999 |
Bornberg-Bauer E, Chan HS. Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space. Proceedings of the National Academy of Sciences of the United States of America. 96: 10689-94. PMID 10485887 DOI: 10.1073/Pnas.96.19.10689 |
0.325 |
|
| 1998 |
Bornberg-Bauer E, Rivals E, Vingron M. Computational approaches to identify leucine zippers. Nucleic Acids Research. 26: 2740-6. PMID 9592163 DOI: 10.1093/Nar/26.11.2740 |
0.314 |
|
| 1997 |
Bornberg-Bauer E. How are model protein structures distributed in sequence space? Biophysical Journal. 73: 2393-403. PMID 9370433 DOI: 10.1016/S0006-3495(97)78268-7 |
0.368 |
|
| Show low-probability matches. |