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Qunfeng Dong, Ph.D. - Publications

Affiliations: 
2000 Iowa State University, Ames, IA, United States 
Area:
Cell Biology
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Xing Y, Li X, Gao X, Dong Q. MicroGMT: A Mutation Tracker for SARS-CoV-2 and Other Microbial Genome Sequences. Frontiers in Microbiology. 11: 1502. PMID 32670259 DOI: 10.3389/Fmicb.2020.01502  0.352
2020 Price TK, Wolff B, Halverson T, Limeira R, Brubaker L, Dong Q, Mueller ER, Wolfe AJ. Temporal Dynamics of the Adult Female Lower Urinary Tract Microbiota. Mbio. 11. PMID 32317321 DOI: 10.1128/Mbio.00475-20  0.308
2019 Dornbier RA, Bajic P, Van Kuiken M, Jardaneh A, Lin H, Gao X, Knudsen B, Dong Q, Wolfe AJ, Schwaderer AL. The microbiome of calcium-based urinary stones. Urolithiasis. PMID 31240349 DOI: 10.1007/S00240-019-01146-W  0.35
2017 Gao X, Lin H, Revanna K, Dong Q. A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy. Bmc Bioinformatics. 18: 247. PMID 28486927 DOI: 10.1186/S12859-017-1670-4  0.315
2015 Vilo C, Galetovic A, Araya JE, Gómez-Silva B, Dong Q. Draft Genome Sequence of a Bacillus Bacterium from the Atacama Desert Wetlands Metagenome. Genome Announcements. 3. PMID 26294639 DOI: 10.1128/Genomea.00955-15  0.379
2014 Vilo C, Benedik MJ, Ilori M, Dong Q. Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Clorobenzoic Acid-Degrading Bacterium. Genome Announcements. 2. PMID 24994805 DOI: 10.1128/Genomea.00664-14  0.325
2014 Vilo C, Benedik MJ, Ilori M, Dong Q. Draft Genome Sequence of Cupriavidus sp. Strain SK-4, a di-ortho-Substituted Biphenyl-Utilizing Bacterium Isolated from Polychlorinated Biphenyl-Contaminated Sludge. Genome Announcements. 2. PMID 24855306 DOI: 10.1128/Genomea.00474-14  0.328
2013 Kuehn JS, Gorden PJ, Munro D, Rong R, Dong Q, Plummer PJ, Wang C, Phillips GJ. Bacterial community profiling of milk samples as a means to understand culture-negative bovine clinical mastitis. Plos One. 8: e61959. PMID 23634219 DOI: 10.1371/Journal.Pone.0061959  0.326
2012 Vilo CA, Benedik MJ, Kunz DA, Dong Q. Draft genome sequence of the cyanide-utilizing bacterium Pseudomonas fluorescens strain NCIMB 11764. Journal of Bacteriology. 194: 6618-9. PMID 23144379 DOI: 10.1128/Jb.01670-12  0.368
2012 Revanna KV, Munro D, Gao A, Chiu CC, Pathak A, Dong Q. A web-based multi-genome synteny viewer for customized data. Bmc Bioinformatics. 13: 190. PMID 22856879 DOI: 10.1186/1471-2105-13-190  0.363
2012 Hughes A, Ruan Y, Ekanayake S, Bae SH, Dong Q, Rho M, Qiu J, Fox G. Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets. Bmc Bioinformatics. 13: S9. PMID 22536872 DOI: 10.1186/1471-2105-13-S2-S9  0.317
2012 Wolfe AJ, Toh E, Shibata N, Rong R, Kenton K, Fitzgerald M, Mueller ER, Schreckenberger P, Dong Q, Nelson DE, Brubaker L. Evidence of uncultivated bacteria in the adult female bladder. Journal of Clinical Microbiology. 50: 1376-83. PMID 22278835 DOI: 10.1128/Jcm.05852-11  0.324
2011 Revanna KV, Chiu CC, Bierschank E, Dong Q. GSV: a web-based genome synteny viewer for customized data. Bmc Bioinformatics. 12: 316. PMID 21810250 DOI: 10.1186/1471-2105-12-316  0.368
2011 Dong Q, Brulc JM, Iovieno A, Bates B, Garoutte A, Miller D, Revanna KV, Gao X, Antonopoulos DA, Slepak VZ, Shestopalov VI. Diversity of bacteria at healthy human conjunctiva. Investigative Ophthalmology & Visual Science. 52: 5408-13. PMID 21571682 DOI: 10.1167/Iovs.10-6939  0.307
2010 Hemmerich C, Buechlein A, Podicheti R, Revanna KV, Dong Q. An Ergatis-based prokaryotic genome annotation web server. Bioinformatics (Oxford, England). 26: 1122-4. PMID 20194626 DOI: 10.1093/Bioinformatics/Btq090  0.331
2010 Podicheti R, Dong Q. Using WebGBrowse to visualize genome annotation on GBrowse. Cold Spring Harbor Protocols. 2010: pdb.prot5392. PMID 20194461 DOI: 10.1101/Pdb.Prot5392  0.32
2009 Tang Z, Choi JH, Hemmerich C, Sarangi A, Colbourne JK, Dong Q. ESTPiper--a web-based analysis pipeline for expressed sequence tags. Bmc Genomics. 10: 174. PMID 19383159 DOI: 10.1186/1471-2164-10-174  0.359
2009 Podicheti R, Gollapudi R, Dong Q. WebGBrowse--a web server for GBrowse. Bioinformatics (Oxford, England). 25: 1550-1. PMID 19357095 DOI: 10.1093/Bioinformatics/Btp239  0.344
2009 Revanna KV, Krishnakumar V, Dong Q. A web-based software system for dynamic gene cluster comparison across multiple genomes. Bioinformatics (Oxford, England). 25: 956-7. PMID 19208612 DOI: 10.1093/Bioinformatics/Btp078  0.354
2007 Dong Q, Wilkerson MD, Brendel V. Tracembler--software for in-silico chromosome walking in unassembled genomes. Bmc Bioinformatics. 8: 151. PMID 17490482 DOI: 10.1186/1471-2105-8-151  0.367
2006 Schlueter SD, Wilkerson MD, Dong Q, Brendel V. xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features. Genome Biology. 7: R111. PMID 17116260 DOI: 10.1186/Gb-2006-7-11-R111  0.357
2005 Dong Q, Lawrence CJ, Schlueter SD, Wilkerson MD, Kurtz S, Lushbough C, Brendel V. Comparative plant genomics resources at PlantGDB. Plant Physiology. 139: 610-8. PMID 16219921 DOI: 10.1104/Pp.104.059212  0.384
2005 Dong Q, Kroiss L, Oakley FD, Wang BB, Brendel V. Comparative EST analyses in plant systems. Methods in Enzymology. 395: 400-18. PMID 15984049 DOI: 10.1016/S0076-6879(05)95022-2  0.359
2004 Fernandes J, Dong Q, Schneider B, Morrow DJ, Nan GL, Brendel V, Walbot V. Genome-wide mutagenesis of Zea mays L. using RescueMu transposons. Genome Biology. 5: R82. PMID 15461800 DOI: 10.1186/Gb-2004-5-10-R82  0.327
2004 Lawrence CJ, Dong Q, Polacco ML, Seigfried TE, Brendel V. MaizeGDB, the community database for maize genetics and genomics. Nucleic Acids Research. 32: D393-7. PMID 14681441 DOI: 10.1093/Nar/Gkh011  0.36
2004 Dong Q, Schlueter SD, Brendel V. PlantGDB, plant genome database and analysis tools. Nucleic Acids Research. 32: D354-9. PMID 14681433 DOI: 10.1093/Nar/Gkh046  0.382
2003 Schlueter SD, Dong Q, Brendel V. GeneSeqer@PlantGDB: Gene structure prediction in plant genomes. Nucleic Acids Research. 31: 3597-600. PMID 12824374 DOI: 10.1093/Nar/Gkg533  0.359
2003 Dong Q, Roy L, Freeling M, Walbot V, Brendel V. ZmDB, an integrated database for maize genome research. Nucleic Acids Research. 31: 244-7. PMID 12519992 DOI: 10.1093/Nar/Gkg082  0.379
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